BAC Information

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BAC

Clone NameB6Ng01-179I16
Chromosome1 (Build37)
Map Location 133,042,157 - 133,196,169
singlet/doubletdoublet
Overlap geneLgtn, Rassf5, Ikbke, Srgap2
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
Downstream geneLOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179I16.bB6Ng01-179I16.g
ACCGA006233GA006234
length835679
definitionB6Ng01-179I16.b B6Ng01-179I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,195,340 - 133,196,169)(133,042,157 - 133,042,676)
sequence
gaattcagtattcattatagctgccttgttctcacactgttagaggttta
tctctagcgagattggtagggcagctgagaaaaacgaggccacagagcca
agtgctgtacttgaggttgtagagaacggatactggcctactgagacagg
ggttctgcagtggaatcttcagccagcccatttagcagcagacttgccac
ccagggctttatgggcatgggcttctttttaatcagccttcctccctgct
gtggcatttacaaactaattgttctgtgtttgggagagccttctacttac
tatccaatctctactgcagcttagatggatgaatgatgccagcaatggct
gtatcacatgtcacatgaatgtgcacataccacagtgctgggcactattc
taaggtttttcagttgaaattaactcctcagaacaacttcatgagaaggg
aaacttcctgtcatcctcattttatacataagaaaatcccacagagaata
gtaatactttgtacttataagccctttttaacctctcaagttattttcat
atgcattttccatatattggttttaaatcactttatatattttacattct
actgggaggactaaataacacaaataaattacctaaaatatggtacaatt
ttgagttattaggttgctgatgaatttactatgtaatcagaaaaatgctt
aaaaagcatagtatgtcaggctgggtatagaggtcagtggtggagtgtac
gtcccttgaatgcccacagacaaagccctgagttcaatctgcagtactgc
cctaaaagaaaattaaaaatcagaatggatagtag
gaattcattttggatattacaatcagaagtgatcagatttgatgagtcac
ctgggaagtcttcaaggagagacttaaggatgggaaaagacataatacga
ggtgctacttcagtaggagcctgtgtagtgctactttagatggcttgaaa
atagaagcagaagtaaaaagctaaaattagatcaatatcagttacgatta
ttatcagttcatattttacccttagtagccataggaactttctgtatcct
ttcaacaacaaaaaaaaaagctttagagatacaggaaacagaaaactatg
aaaaatagattaagatataagccttagaatgacttataaatgaaagtaag
agaaacacaggtgaaagaacttagacaagaatctaccatgctaccatatg
ataaaacttaggagaggtgatccaaggctgttagaaaaccagtcttagtc
tactcagttacttatacaagacctaccaggagacaataggcagccccaag
gttatgaagcagttaaatagaatcctatagacataattagatttgaggag
atttgtggtagtttgaatatgcttggcccagggagtggcactattaggtg
tggcttgtaggaataggtgtggtctttgttggaggaagtgtgtcactatg
ggggtggggtttgagaccctccttgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133195340_133196169
seq2: B6Ng01-179I16.b_42_876 (reverse)

seq1  CTACTATCCATTCTTGATTTTTTA-TTTCTTTTA-GGCAGTACTGCAGAT  48
      ||||||||||||| |||||||| | ||||||||| |||||||||||||||
seq2  CTACTATCCATTC-TGATTTTTAATTTTCTTTTAGGGCAGTACTGCAGAT  49

seq1  TGAACTCAGGGCTTCGTCTGTGGGCATTCAA-GGACGTACACTCCACCAC  97
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TGAACTCAGGGCTTTGTCTGTGGGCATTCAAGGGACGTACACTCCACCAC  99

seq1  TGACCTCTATACCCAGCCTGACATACTATGC-TTTTAAGCATTTTTCTGA  146
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGACCTCTATACCCAGCCTGACATACTATGCTTTTTAAGCATTTTTCTGA  149

seq1  TTACATAGTAAATTCATCAGCAACCTAAT-ACTC-AAATTGTACCATATT  194
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TTACATAGTAAATTCATCAGCAACCTAATAACTCAAAATTGTACCATATT  199

seq1  TTAGGTAATTTATTTGTGTTATTTAGTCCTCCCAGTAGAATGTAAAATAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAATTTATTTGTGTTATTTAGTCCTCCCAGTAGAATGTAAAATAT  249

seq1  ATAAAGTGATTTAAAACCAATATATGGAAAATGCATATGAAAATAACTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGATTTAAAACCAATATATGGAAAATGCATATGAAAATAACTTG  299

seq1  AGAGGTTAAAAAGGGCTTATAAGTACAAAGTATTACTATTCTCTGTGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAAAAAGGGCTTATAAGTACAAAGTATTACTATTCTCTGTGGGA  349

seq1  TTTTCTTATGTATAAAATGAGGATGACAGGAAGTTTCCCTTCTCATGAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATGTATAAAATGAGGATGACAGGAAGTTTCCCTTCTCATGAAG  399

seq1  TTGTTCTGAGGAGTTAATTTCAACTGAAAAACCTTAGAATAGTGCCCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAGGAGTTAATTTCAACTGAAAAACCTTAGAATAGTGCCCAGC  449

seq1  ACTGTGGTATGTGCACATTCATGTGACATGTGATACAGCCATTGCTGGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTATGTGCACATTCATGTGACATGTGATACAGCCATTGCTGGCA  499

seq1  TCATTCATCCATCTAAGCTGCAGTAGAGATTGGATAGTAAGTAGAAGGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCCATCTAAGCTGCAGTAGAGATTGGATAGTAAGTAGAAGGCT  549

seq1  CTCCCAAACACAGAACAATTAGTTTGTAAATGCCACAGCAGGGAGGAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAACACAGAACAATTAGTTTGTAAATGCCACAGCAGGGAGGAAGG  599

seq1  CTGATTAAAAAGAAGCCCATGCCCATAAAGCCCTGGGTGGCAAGTCTGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAAAGAAGCCCATGCCCATAAAGCCCTGGGTGGCAAGTCTGCT  649

seq1  GCTAAATGGGCTGGCTGAAGATTCCACTGCAGAACCCCTGTCTCAGTAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGGGCTGGCTGAAGATTCCACTGCAGAACCCCTGTCTCAGTAGG  699

seq1  CCAGTATCCGTTCTCTACAACCTCAAGTACAGCACTTGGCTCTGTGGCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCCGTTCTCTACAACCTCAAGTACAGCACTTGGCTCTGTGGCCT  749

seq1  CGTTTTTCTCAGCTGCCCTACCAATCTCGCTAGAGATAAACCTCTAACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTCTCAGCTGCCCTACCAATCTCGCTAGAGATAAACCTCTAACAG  799

seq1  TGTGAGAACAAGGCAGCTATAATGAATACTGAATTC  830
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAACAAGGCAGCTATAATGAATACTGAATTC  835

seq1: chr1_133042157_133042676
seq2: B6Ng01-179I16.g_72_591

seq1  GAATTCATTTTGGATATTACAATCAGAAGTGATCAGATTTGATGAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGATATTACAATCAGAAGTGATCAGATTTGATGAGTCAC  50

seq1  CTGGGAAGTCTTCAAGGAGAGACTTAAGGATGGGAAAAGACATAATACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTCTTCAAGGAGAGACTTAAGGATGGGAAAAGACATAATACGA  100

seq1  GGTGCTACTTCAGTAGGAGCCTGTGTAGTGCTACTTTAGATGGCTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTACTTCAGTAGGAGCCTGTGTAGTGCTACTTTAGATGGCTTGAAA  150

seq1  ATAGAAGCAGAAGTAAAAAGCTAAAATTAGATCAATATCAGTTACGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGAAGTAAAAAGCTAAAATTAGATCAATATCAGTTACGATTA  200

seq1  TTATCAGTTCATATTTTACCCTTAGTAGCCATAGTGACTTTCTGTATCCT  250
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTATCAGTTCATATTTTACCCTTAGTAGCCATAGGAACTTTCTGTATCCT  250

seq1  TTCAACAACAAAAAAAAAAGCTTTAGAGATACAGGAAACAGAAAACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAACAAAAAAAAAAGCTTTAGAGATACAGGAAACAGAAAACTATG  300

seq1  AAAAATAGATTAAGATATAAGCCTTAGAATGACTTATAAATGAAAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGATTAAGATATAAGCCTTAGAATGACTTATAAATGAAAGTAAG  350

seq1  AGAAACACAGGTGAAAGAACTTAGACAAGAATCTACCATGCTACCATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAGGTGAAAGAACTTAGACAAGAATCTACCATGCTACCATATG  400

seq1  ATAAAACTTAGGAGAGGTGATCCAAGGCTGTTAGAAAACCAGTCTTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTAGGAGAGGTGATCCAAGGCTGTTAGAAAACCAGTCTTAGTC  450

seq1  TACTCAGTTACTTATACAAGACCTACCAGGAGACAATAGGCAGCCCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTTACTTATACAAGACCTACCAGGAGACAATAGGCAGCCCCAAG  500

seq1  GTTATGAAGCAGTTAAATAG  520
      ||||||||||||||||||||
seq2  GTTATGAAGCAGTTAAATAG  520