BAC Information

Click to search

BAC

Clone NameB6Ng01-179M02
Chromosome1 (Build37)
Map Location 42,567,975 - 42,568,562
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M02.bB6Ng01-179M02.g
ACCGA006389GA006390
length1,100588
definitionB6Ng01-179M02.b B6Ng01-179M02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcaggtctgagccccatttttaatgggcttatttgattt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggtatggatcgattcgc
attcttctacatgataacaaccaattgtgccagcaccaattcttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctctctctgtaccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttcttttaatttctttcttcaggagacttgaagtttttatca
tacagatctttccacttccttaagttaggagttcacgcccgagatattgt
atattatttgtgactatggagaagggtgttgttttttctaattcctttcc
tcagccctggttaattctttggtatagaaggaatgcccattgacttggtt
tgagttatttttaattcccagcttacttccaccgaagcttgttttataag

gaattcaaatctcctccttcaaattcataacatgcctgggctctgccttt
ctctaagggagctttattttccattcatttccctgtggaggtcacacctg
ccccacataattccctgggcaaagctagagaaaaaaacccagcaacgttc
ttacggcatctgggtatatatttaaatctatttcagtaagtatttgttga
atgtttactatattgcagatacaaggtactgtgggctgggaggtaattga
gagtgctggtagatgcagaaatacagagagagttgcactcgtctaggttt
gggtctggaaaagctctactcacacagatcccgtgcaatgatggagactt
gcgactagaaaagacaaagcatcctgaaggaaccagaaggaacattactg
atggccttggagtgtgggccagattcattaactagacggaggacagggat
agggtgttgaggaagatcgcggagggtccaaagaccaggttaagaagaga
gggtgttaaagggctgccaatagacggtagatggaggcgccaattccaca
ggtgcactccactggggtgggggttagtagggattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42567975_42568562
seq2: B6Ng01-179M02.g_65_652 (reverse)

seq1  CACAATCCCTACTAACCCCCACCCCAGTGGAGTGCACCTGTGGAATTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCCTACTAACCCCCACCCCAGTGGAGTGCACCTGTGGAATTGGC  50

seq1  GCCTCCATCTACCGTCTATTGGCAGCCCTTTAACACCCTCTCTTCTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATCTACCGTCTATTGGCAGCCCTTTAACACCCTCTCTTCTTAAC  100

seq1  CTGGTCTTTGGACCCTCCGCGATCTTCCTCAACACCCTATCCCTGTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTTGGACCCTCCGCGATCTTCCTCAACACCCTATCCCTGTCCTC  150

seq1  CGTCTAGTTAATGAATCTGGCCCACACTCCAAGGCCATCAGTAATGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAGTTAATGAATCTGGCCCACACTCCAAGGCCATCAGTAATGTTCC  200

seq1  TTCTGGTTCCTTCAGGATGCTTTGTCTTTTCTAGTCGCAAGTCTCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCCTTCAGGATGCTTTGTCTTTTCTAGTCGCAAGTCTCCATCA  250

seq1  TTGCACGGGATCTGTGTGAGTAGAGCTTTTCCAGACCCAAACCTAGACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGGGATCTGTGTGAGTAGAGCTTTTCCAGACCCAAACCTAGACGA  300

seq1  GTGCAACTCTCTCTGTATTTCTGCATCTACCAGCACTCTCAATTACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTCTCTCTGTATTTCTGCATCTACCAGCACTCTCAATTACCTCC  350

seq1  CAGCCCACAGTACCTTGTATCTGCAATATAGTAAACATTCAACAAATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACAGTACCTTGTATCTGCAATATAGTAAACATTCAACAAATACT  400

seq1  TACTGAAATAGATTTAAATATATACCCAGATGCCGTAAGAACGTTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATAGATTTAAATATATACCCAGATGCCGTAAGAACGTTGCTGG  450

seq1  GTTTTTTTCTCTAGCTTTGCCCAGGGAATTATGTGGGGCAGGTGTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCTCTAGCTTTGCCCAGGGAATTATGTGGGGCAGGTGTGACCT  500

seq1  CCACAGGGAAATGAATGGAAAATAAAGCTCCCTTAGAGAAAGGCAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGAAATGAATGGAAAATAAAGCTCCCTTAGAGAAAGGCAGAGCC  550

seq1  CAGGCATGTTATGAATTTGAAGGAGGAGATTTGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGTTATGAATTTGAAGGAGGAGATTTGAATTC  588