BAC Information

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BAC

Clone NameB6Ng01-179P17
Chromosome1 (Build37)
Map Location 127,794,900 - 127,851,101
singlet/doubletdoublet
Overlap geneLypd1, E030049G20Rik
Upstream geneActr3, Slc35f5
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P17.bB6Ng01-179P17.g
ACCGA006548GA006549
length9581,070
definitionB6Ng01-179P17.b B6Ng01-179P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,850,208 - 127,851,101)(127,794,900 - 127,795,934)
sequence
gaattctatagaggtcattggagagcatgacaggagtctgcttgttcgaa
agatgggcgcgtccttccactagtgtggaatggcatcagattggagaggc
ctcaagagaggagaaggagagggattaaaggtaggaggtgcgtaaatctt
tcaaggaccttcactttactctgaaatggtgtagacaaatggggtcactg
gagagcttctctgaggatggagagaatcgccacacattaaatgctaatgg
cacaaatccaagagaagaaggcaaaatgtgaatctgtaaaggacctgtac
atgtagacagactgtcctgagctatatgcactgtccttagctatatgcac
tgtccttagctatatggtcttcatccacggtgaactagggaataggagag
cacacaggcaggtgctttgagtatagacagggctttttcaattctcttct
gacttcttgttttctgaggggaaagcatagccctcaggtaagaatgagca
tgggtaagcaagtgttactgttttgaagagatggaggatagaatgggcta
gattctcattggatctgggaatgagaggcggtgctaagcatggctgtgtg
tttctcactttactgttcagaacacaaaagaaaagtcaatggggtgctgc
tggcttaacagactcaggtttctggtaagtggtacaacaaaaaaagaggt
tgtgaagttgagaaaggcagtgatggattggaggtgtggcttagttaata
gagtgcttgcccagcatacacagtgccctgggttctgtcaccatcaccac
ataaactggacattgtaatacacacctgcaatatttagaatttgggaggg
ggaaggaggatgatctcaatagtttcgtgggctaatctttgggctatgta
gacaagtttgagtgccagccctggagtaccttaagatcctgtctccgaca
tctaccaa

gaattcatctgtctaggccgcagctctgtccactaactgccttcccctct
ggaaatacaaaaccccagagaatcccctgctttctttatagctggaatac
cattgagtttacagtttgggtttctttacttagtgcaaaattattcttgc
tacttctgaatagtttttattgttgcctaagacccaagtgcttctgcctt
acataaggaacacaagtgtataaaagccactgtccagcctcagacacctg
ctcccactgatgccctttgaaggagccaccatggagggcggcctgaacct
ccatgtgcattcatatttaccccacgctctgcatgctcccgccatagctg
gctgagagcttcgcccggcgtcacccgcccctggcactgtctccagtcga
gaacaagtccaagaaatagaaaaacataaaaagctattgtccatgtccag
tgagaaatgaaacgcattggaccaagcaccacaacttccttaaaataata
tacctctttatcacttccgcatggggatcaggctcagggctgccgaagtc
ataaaccttttgaaatcaatggcttgtgccatcaccacttgattctaagg
catccctttttttttttttttaaaagagggcaatttattacgaactttca
atggtttcaccttatcttcagcactaaattcagcccatgtcctgcttggt
attgtagtgttggtggcaaccagagggttggaagcgatttattaatgaga
gaacatacatgccctgaagctctggctgaaaaaaaaaaatagcttatgaa
ttactgtgtcgccatagcccaaagtttacctcatctagaaagaattaatg
acacatgttcagatttctttccgcttgtccccaggctaactcatcccaga
attttttgttggttggcttgttttgttttagggagaaggtcttggtggtg
ggcccagggctgggccttttgatccttggcaatatatagtcaaagaacct
tggaaactttctgaacctcttaaggtttcccactaccctgggttaaccta
gggattacaggatttggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127850208_127851101
seq2: B6Ng01-179P17.b_95_1001 (reverse)

seq1  GATGTC-GAGACAGGATCTT-AGGTACTCCA-GGCTGAC-CTCAAACTTG  46
      |||||| ||||||||||||| |||||||||| ||||| | ||||||||||
seq2  GATGTCGGAGACAGGATCTTAAGGTACTCCAGGGCTGGCACTCAAACTTG  50

seq1  -CTACATAG-CCAAGGAT--GACCACG-AACTTTT--GATCATCCTCCTT  89
       |||||||| |||| |||  | ||||| |||| ||  |||||||||||||
seq2  TCTACATAGCCCAAAGATTAGCCCACGAAACTATTGAGATCATCCTCCTT  100

seq1  CCCCCT-CCAAATTCT-AATATTGCAGGTGTGTATTACAATGTCCAGTTT  137
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCAAATTCTAAATATTGCAGGTGTGTATTACAATGTCCAGTTT  150

seq1  ATGTGGTGATGGTGACAGAACCCAGGGCACTGTGTATGCTGGGCAAGCAC  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGATGGTGACAGAACCCAGGGCACTGTGTATGCTGGGCAAGCAC  200

seq1  TCTATTAACTAAGCCACACCTCCAATCCATCACTGCCTTTCTCAACTTCA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAACTAAGCCACACCTCCAATCCATCACTGCCTTTCTCAACTTCA  250

seq1  CAACCTCTTTTTTTGTTGTACCACTTACCAGAAACCTGAGTCTGTTAAGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTTTTTTTGTTGTACCACTTACCAGAAACCTGAGTCTGTTAAGC  300

seq1  CAGCAGCACCCCATTGACTTTTCTTTTGTGTTCTGAACAGTAAAGTGAGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCACCCCATTGACTTTTCTTTTGTGTTCTGAACAGTAAAGTGAGA  350

seq1  AACACACAGCCATGCTTAGCACCGCCTCTCATTCCCAGATCCAATGAGAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGCCATGCTTAGCACCGCCTCTCATTCCCAGATCCAATGAGAA  400

seq1  TCTAGCCCATTCTATCCTCCATCTCTTCAAAACAGTAACACTTGCTTACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCCATTCTATCCTCCATCTCTTCAAAACAGTAACACTTGCTTACC  450

seq1  CATGCTCATTCTTACCTGAGGGCTATGCTTTCCCCTCAGAAAACAAGAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATTCTTACCTGAGGGCTATGCTTTCCCCTCAGAAAACAAGAAG  500

seq1  TCAGAAGAGAATTGAAAAAGCCCTGTCTATACTCAAAGCACCTGCCTGTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAATTGAAAAAGCCCTGTCTATACTCAAAGCACCTGCCTGTG  550

seq1  TGCTCTCCTATTCCCTAGTTCACCGTGGATGAAGACCATATAGCTAAGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTATTCCCTAGTTCACCGTGGATGAAGACCATATAGCTAAGGA  600

seq1  CAGTGCATATAGCTAAGGACAGTGCATATAGCTCAGGACAGTCTGTCTAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATATAGCTAAGGACAGTGCATATAGCTCAGGACAGTCTGTCTAC  650

seq1  ATGTACAGGTCCTTTACAGATTCACATTTTGCCTTCTTCTCTTGGATTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGTCCTTTACAGATTCACATTTTGCCTTCTTCTCTTGGATTTG  700

seq1  TGCCATTAGCATTTAATGTGTGGCGATTCTCTCCATCCTCAGAGAAGCTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAGCATTTAATGTGTGGCGATTCTCTCCATCCTCAGAGAAGCTC  750

seq1  TCCAGTGACCCCATTTGTCTACACCATTTCAGAGTAAAGTGAAGGTCCTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGACCCCATTTGTCTACACCATTTCAGAGTAAAGTGAAGGTCCTT  800

seq1  GAAAGATTTACGCACCTCCTACCTTTAATCCCTCTCCTTCTCCTCTCTTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTACGCACCTCCTACCTTTAATCCCTCTCCTTCTCCTCTCTTG  850

seq1  AGGCCTCTCCAATCTGATGCCATTCCACACTAGTGGAAGGACGCGCCCAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTCCAATCTGATGCCATTCCACACTAGTGGAAGGACGCGCCCAT  900

seq1  CTTTCGA  894
      |||||||
seq2  CTTTCGA  907


seq1: chr1_127794900_127795934
seq2: B6Ng01-179P17.g_65_1134

seq1  GAATTCATCTGTCTAGGCCGCAGCTCTGTCCACTAACTGCCTTCCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTCTAGGCCGCAGCTCTGTCCACTAACTGCCTTCCCCTCT  50

seq1  GGAAATACAAAACCCCAGAGAATCCCCTGCTTTCTTTATAGCTGGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACAAAACCCCAGAGAATCCCCTGCTTTCTTTATAGCTGGAATAC  100

seq1  CATTGAGTTTACAGTTTGGGTTTCTTTACTTAGTGCAAAATTATTCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTTACAGTTTGGGTTTCTTTACTTAGTGCAAAATTATTCTTGC  150

seq1  TACTTCTGAATAGTTTTTATTGTTGCCTAAGACCCAAGTGCTTCTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGAATAGTTTTTATTGTTGCCTAAGACCCAAGTGCTTCTGCCTT  200

seq1  ACATAAGGAACACAAGTGTATAAAAGCCACTGTCCAGCCTCAGACACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGAACACAAGTGTATAAAAGCCACTGTCCAGCCTCAGACACCTG  250

seq1  CTCCCACTGATGCCCTTTGAAGGAGCCACCATGGAGGGCGGCCTGAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGATGCCCTTTGAAGGAGCCACCATGGAGGGCGGCCTGAACCT  300

seq1  CCATGTGCATTCATATTTACCCCACGCTCTGCATGCTCCCGCCATAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCATTCATATTTACCCCACGCTCTGCATGCTCCCGCCATAGCTG  350

seq1  GCTGAGAGCTTCGCCCGGCGTCACCCGCCCCTGGCACTGTCTCCAGTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGCTTCGCCCGGCGTCACCCGCCCCTGGCACTGTCTCCAGTCGA  400

seq1  GAACAAGTCCAAGAAATAGAAAAACATAAAAAGCTATTGTCCATGTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTCCAAGAAATAGAAAAACATAAAAAGCTATTGTCCATGTCCAG  450

seq1  TGAGAAATGAAACGCATTGGACCAAGCACCACAACTTCCTTAAAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGAAACGCATTGGACCAAGCACCACAACTTCCTTAAAATAATA  500

seq1  TACCTCTTTATCACTTCCGCATGGGGATCAGGCTCAGGGCTGCCGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTATCACTTCCGCATGGGGATCAGGCTCAGGGCTGCCGAAGTC  550

seq1  ATAAACCTTTTGAAATCAATGGCTTGTGCCATCACCACTTGATTCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTTTTGAAATCAATGGCTTGTGCCATCACCACTTGATTCTAAGG  600

seq1  CATCCCTTTTTTTTTTTTTTTAAAAGAGGGCAATTTATTACGAACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTTTTTTTTTTTTTTAAAAGAGGGCAATTTATTACGAACTTTCA  650

seq1  ATGGTTTCACCTTATCTTCAGCACTAAATTCAGCCCATGTCCTGCTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCACCTTATCTTCAGCACTAAATTCAGCCCATGTCCTGCTTGGT  700

seq1  ATTGTAGTGTTGGTGGCAACCAGAGGGTTGGAAGCGATTTATTAATGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTGTTGGTGGCAACCAGAGGGTTGGAAGCGATTTATTAATGAGA  750

seq1  GAACATACATGCCCTGAAGCTCTGGCTGAAAAAAAAAAATAGCTTATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACATGCCCTGAAGCTCTGGCTGAAAAAAAAAAATAGCTTATGAA  800

seq1  TTACTGTGTCGCCATAGCCCAAAGTTTACCTCATCTAGAAAGAATTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTCGCCATAGCCCAAAGTTTACCTCATCTAGAAAGAATTAATG  850

seq1  ACACATG-TCAGATTTC-TTCCGCTTGTCCCCAGGCTAACTCATCCCAGA  898
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACATGTTCAGATTTCTTTCCGCTTGTCCCCAGGCTAACTCATCCCAGA  900

seq1  --TTTTTGTTG--TTGCTTG-TTTGTTTTA-GGAG-AGGTCTT-GTG--T  938
        |||||||||  | ||||| ||||||||| |||| ||||||| |||   
seq2  ATTTTTTGTTGGTTGGCTTGTTTTGTTTTAGGGAGAAGGTCTTGGTGGTG  950

seq1  GGCCCA-GGCTGG---CTTTGATC--TTGCA--ATATAGTC-AAGAA-CT  978
      |||||| ||||||    |||||||  | |||  |||||||| ||||| ||
seq2  GGCCCAGGGCTGGGCCTTTTGATCCTTGGCAATATATAGTCAAAGAACCT  1000

seq1  TG--AAC-TTCTGAACCTCT--AGGTT--CCACTA-CCTGG--TAA-CTA  1017
      ||  ||| ||||||||||||  |||||  |||||| |||||  ||| |||
seq2  TGGAAACTTTCTGAACCTCTTAAGGTTTCCCACTACCCTGGGTTAACCTA  1050

seq1  -GGATTACA-GAATTGGACC  1035
       |||||||| || |||||||
seq2  GGGATTACAGGATTTGGACC  1070


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