BAC Information

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BAC

Clone NameB6Ng01-180A05
Chromosome1 (Build37)
Map Location 158,435,193 - 158,436,329
singlet/doubletsinglet
Overlap genenone
Upstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1
Downstream geneLOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A05.bB6Ng01-180A05.g
ACCGA006566GA006567
length1,1781,144
definitionB6Ng01-180A05.b B6Ng01-180A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttccatttcaataaaatgacaaaacccaattttgtaaaaaccaa
attactctgatatttcaaagacaatattcaaatggcgactatgtacataa
aaagatacctaacctcttgttcccttactcctgttcctctcttgccttct
tgttcctgctctgtcccctcacccctccccttttcccccaattctctccc
ccaacacacacaggctcatggctggcctctactcctctactctcttcctc
tgcctttctctgcttctactatcctcttaactccactccccatgccctga
gtaaactccactgtgttcatagcagccttatttatactagccagaagctg
gaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtggt
acatttacacaatggagtactactcagttattaaaaacaatttatgaaat
tcttagacaaatggatggatctggagggcatcatactgagtgaggtaacc
caatcacaaaagaacacacatgatatgcactcaccaataagtggatatta
gttcagaaacttggaatacccaagatacaattcacaaaacacatgaaact
caagaaggaagaccaaagtgtggatactttgatccttcttagaaaagggg
tcaaaatacccatggaaggagttacagagacaaagtgtgaagcagagact
gaaggaatgaccatccagagactgcccccacctggggatccatcccataa
acaacctccaaaaccagacactattgtggatgccaacaagagcctgctga
cagaaacctgatatagctgtctccagagaggctcttgccagtgcctgaca
aatacagaagtggatgctcacagccatccattggactgagcacaggatcc
ccaatgaaggagctagagaaagtacccaaggagctgaaggggtttgcagc
cccatagaaggacaccaatatgaacagagttccctgggactaaaccacca
ccaaagagcaccattggtaggactcatgggttcagctgcatatgtgcaaa
gactggcctagctgggtcatcaatgggaaggagaaggcctttggtcctgt
gaaggttctatgcccccactaaagggaaattgctcgtgccaagaaagcta
ggaatgtggtgtggctagtactacgcga
gaattcacctgcagctgcttgccctgttaaaccagtctgttctgggaatt
tggctgacaattctctctttattgatttactggattgttagatagcttag
tttcagtttaatgacctggaactttggcatggtaacctaatccttattga
cgttccctaaggtgtctgggggtgcctttataactagtgttataggttta
ggtcctaaacatattgataaaaattactttttcatttaaaaaaatcacag
tctgggacttgacaggtggctcagtggttaaaagtcaccactcctcttgc
agacccaagttcgcttcccagaacccaggtcaggcagctcacaactgcct
gtcacttcaactccacagaatctgacatctccggccttcatacacatcta
acaggtacatactcacacagcaggctaccgtcatatacacaattaaaact
tttttaacctaaaaaaccgactatgctatcaacgttatagacacacggta
tttatgccattgttgcacaagtgggcacaccttgcctggccagctgtcac
tgtggttctcaggagccaattccctcatgacaaaaagaggatttgaagtt
taagtttgcagtgggagttgttgtcttcttagcatctgaaaatgccacct
atggagggctataaaacaaacgggtgatccggaattttcattatatatat
atatttttttaaacatcatgatcaagactgggctggagaaaggctccgtg
aagatccaagtttggttcccagcacccatggcaggtgttcacaagcttcc
tgttaccccagctctaggcgccctcttctggagttcttaggtactacatg
gaccctcattacatgaatgaaaacccccctccaatggtctctgcatcagc
tcctgcctccaagagccctgcttgagttcttgacttctcttaatggtggc
ctacatccagaagtgtagccaaataaacccttcccttcccaaaccttgct
ttttgttcatggtgttcctttgcagcaatggaatccatagctagacagct
gctgacacttattgggcaatagcatgttagactctctgacatctgttaat
attgggatacaggactactggcctggtggggtgaggccatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158435193_158436329
seq2: B6Ng01-180A05.g_64_1207 (reverse)

seq1  CAGCAT-GCCTCACC---ACAGACACGTAGT-CTGTACCCCCAATATTAA  45
      |||||| ||||||||    ||| |  ||||| |||||  |||||||||||
seq2  CAGCATGGCCTCACCCCACCAGGCCAGTAGTCCTGTA-TCCCAATATTAA  49

seq1  CAGATGTCTGAGAGTCTACACTGCCTATTGCACAAT-AGTGTCAGCAGCT  94
      |||||||| ||||||||| ||   ||||||| |||| |||||||||||||
seq2  CAGATGTCAGAGAGTCTA-ACATGCTATTGCCCAATAAGTGTCAGCAGCT  98

seq1  GTCTTAGCTATGGTTTCCATTGCTGCAAGGAAACACCATGAACAAAAAGC  144
      ||| ||||||||| |||||||||||||| | |||||||||||||||||||
seq2  GTC-TAGCTATGGATTCCATTGCTGCAAAGGAACACCATGAACAAAAAGC  147

seq1  AA-GTTTGGG-AGGGAAGGGTTTATTTGGCTTACACTTCTGGATGTAGGC  192
      || ||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAGGTTTGGGAAGGGAAGGGTTTATTTGGC-TACACTTCTGGATGTAGGC  196

seq1  CACCATTAGAGGAAGTC-AGGACTCAAGCAGGGCTCTTGGAGGCAGGAGC  241
      ||||||||   |||||| || |||||||||||||||||||||||||||||
seq2  CACCATTAAGAGAAGTCAAGAACTCAAGCAGGGCTCTTGGAGGCAGGAGC  246

seq1  TGATGCAGAGACCA-TGGAGGGGGGTTTTCATTCATGTAATGAGGGTCCA  290
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATGCAGAGACCATTGGAGGGGGGTTTTCATTCATGTAATGAGGGTCCA  296

seq1  TGTAGTACCTAAGAACTCCAGAAGAGGGCGCCTAGAGCTGGGGTAACAGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACCTAAGAACTCCAGAAGAGGGCGCCTAGAGCTGGGGTAACAGG  346

seq1  -AGCTTGTGAACACCTTCCATGGGTGCTGGGAACCAAACTTGGATCTTCA  389
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCTTGTGAACACCTGCCATGGGTGCTGGGAACCAAACTTGGATCTTCA  396

seq1  CGGAGCCTTTCTCCAGCCCAGTCTTGATCATGATGTTTAAAAAAATATAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCTTTCTCCAGCCCAGTCTTGATCATGATGTTTAAAAAAATATAT  446

seq1  ATATATAATGAAAATTCCGGATCACCCGTTTGTTTTATAGCCCTCCATAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATGAAAATTCCGGATCACCCGTTTGTTTTATAGCCCTCCATAG  496

seq1  GTGGCATTTTCAGATGCTAAGAAGACAACAACTCCCACTGCAAACTTAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTTTCAGATGCTAAGAAGACAACAACTCCCACTGCAAACTTAAA  546

seq1  CTTCAAATCCTCTTTTTGTCATGAGGGAATTGGCTCCTGAGAACCACAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATCCTCTTTTTGTCATGAGGGAATTGGCTCCTGAGAACCACAGT  596

seq1  GACAGCTGGCCAGGCAAGGTGTGCCCACTTGTGCAACAATGGCATAAATA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGCCAGGCAAGGTGTGCCCACTTGTGCAACAATGGCATAAATA  646

seq1  CCGTGTGTCTATAACGTTGATAGCATAGTCGGTTTTTTAGGTTAAAAAAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTCTATAACGTTGATAGCATAGTCGGTTTTTTAGGTTAAAAAAG  696

seq1  TTTTAATTGTGTATATGACGGTAGCCTGCTGTGTGAGTATGTACCTGTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGTGTATATGACGGTAGCCTGCTGTGTGAGTATGTACCTGTTA  746

seq1  GATGTGTATGAAGGCCGGAGATGTCAGATTCTGTGGAGTTGAAGTGACAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTATGAAGGCCGGAGATGTCAGATTCTGTGGAGTTGAAGTGACAG  796

seq1  GCAGTTGTGAGCTGCCTGACCTGGGTTCTGGGAAGCGAACTTGGGTCTGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTGAGCTGCCTGACCTGGGTTCTGGGAAGCGAACTTGGGTCTGC  846

seq1  AAGAGGAGTGGTGACTTTTAACCACTGAGCCACCTGTCAAGTCCCAGACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTGGTGACTTTTAACCACTGAGCCACCTGTCAAGTCCCAGACT  896

seq1  GTGATTTTTTTAAATGAAAAAGTAATTTTTATCAATATGTTTAGGACCTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTTTAAATGAAAAAGTAATTTTTATCAATATGTTTAGGACCTA  946

seq1  AACCTATAACACTAGTTATAAAGGCACCCCCAGACACCTTAGGGAACGTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATAACACTAGTTATAAAGGCACCCCCAGACACCTTAGGGAACGTC  996

seq1  AATAAGGATTAGGTTACCATGCCAAAGTTCCAGGTCATTAAACTGAAACT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGATTAGGTTACCATGCCAAAGTTCCAGGTCATTAAACTGAAACT  1046

seq1  AAGCTATCTAACAATCCAGTAAATCAATAAAGAGAGAATTGTCAGCCAAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCTAACAATCCAGTAAATCAATAAAGAGAGAATTGTCAGCCAAA  1096

seq1  TTCCCAGAACAGACTGGTTTAACAGGGCAAGCAGCTGCAGGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAACAGACTGGTTTAACAGGGCAAGCAGCTGCAGGTGAATTC  1144