BAC Information

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BAC

Clone NameB6Ng01-180A06
Chromosome1 (Build37)
Map Location 50,579,401 - 50,724,266
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A06.bB6Ng01-180A06.g
ACCGA006568GA006569
length1,1111,136
definitionB6Ng01-180A06.b B6Ng01-180A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,723,186 - 50,724,266)(50,579,401 - 50,580,562)
sequence
gaattctacatctttatctaaaagctaataggagaaaaatggcttcaagg
cttctaggaagatggtcttaaagcctatgcccacagtgatacacttcctc
caacaatgccatacctactttaataagacaacgcctccaaatagtgccat
tccctggcccaaatatattcaaatgaccacagagacatagatgatttaga
tgctgtacaaacattcagacaatgatgaagggagtatttttgtttgtttg
tttgtttgcttgtttgtttttgtaagaaggattacacaatcccatttgtt
gaatctatttgtatgtggtgactccagaggttaagtgcctacatatatga
tataaatgtagtagccatttataattgtacattaattcttgtgtagtatt
cctttcaagaagttagcacagacgttaacacacacacacatatatatcca
aatattattgattatatatatatcacaagtacctaattttcttcaggact
ttaaatacaagtaaagttaaaaaacatagactttaaagataagtgaaatt
ataccagactgaaacaggttttcaggtattacagtcacttactagctatc
taaattttatgatttaaacacatatatctaaagtgtacagactaaatcta
cataccagggaaaagatttgtcttttttgcttctgggttacctcatttaa
gataagagtttttagctctaccctcttaactggaaatctcataattttgt
ttttcttagtatctatctggacaatatttcactgtgtaaatgtaccttat
tcttattattcattcattagttgatgatatttaggttagtttcaaatttt
ggcttttatgaatagagcagcaataactatgaatgagaacttatttttca
gtaagatgccaagtcttttgggtataaatgcaagagaagtatggttggat
tgtgtgccagatccatttcagccttttgaggactgcctatactgatttcc
acagttgctgttctaagtttacattcagaccaatatgatagttgtttctt
tttactacacagtcttgcatacttattctgacatttatttaatgatctgg
ctattctgaga

gaattcaactataagtttgtaagctattacaattaagtgctatacaggca
acagttgaatggacatgtaagaaaatctgtctaaatataagattggatac
aaaacatgatatattacttctgcgctagtccttccagattttcagagctt
taacccactcccatcctcaaactattattactttttgaaattttaataat
gtcagtgttactgaactcatgagtgtctttagaaccctgcaaaatctttg
atcttttattaaaaatatgttttataagtaacatatttttatatcaaatt
aaaatatattaaacagttgtattactttgtgggaagttaaatgttagaaa
ttcttagaatcatctctatataatgcttaaatattgaatagccatacaat
caagtaatttcatattataaaaatgtttccattaagtaaagacctaatta
aaaccatttgtctaagaataattgagatctagtgcttgacttgcaggttt
agaagaaaacagactaatgaaatttccaagccttaccttatttacttctt
acctagggttttgtaagttcaggttaagttaactcactgtcttctaattc
ttaggaaataacctcaagtgattccttctcaaatatttatttatacatac
acacaatatatttgcatgactccattttgcacttattttttaaattacca
cttccctgtctagctatttaatatgcatttaccaataaactaaaatattc
cagaaacaaagctcatgaaaatgtgtattagttactttcttttttttttt
ttctttatcatttaagtatttggttctttttttttttcccccccgagggt
ttttatttaaatactttttattaggtattttcctcatttacatttccaat
gctattccaaaagtcacccatacctcccacccacgccctacccacccact
cccacttttggccctagcatcccctgtactgtggcatttaaagtttgcaa
gtccatgggctctcttcagcgatgaacatctaggccatctgctgatcata
tgcagtagagacacagctctgggggtactgattagtcatttgttgttcca
cttaagttgcagatcccagctcttggactctagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50723186_50724266
seq2: B6Ng01-180A06.b_78_1156 (reverse)

seq1  TCTCAGAATAGCCAAGATCAATAAATAAAATGTCAGAATAAGTATACAAG  50
      ||||||||||||| |||||| ||||| |||||||||||||||||| ||||
seq2  TCTCAGAATAGCC-AGATCATTAAAT-AAATGTCAGAATAAGTATGCAAG  48

seq1  ACTGTGTAGT-AAAAGAAACACTTATTCATTATTGGTCTGAATGTAAACT  99
      |||||||||| ||||||||||  || ||| ||||||||||||||||||||
seq2  ACTGTGTAGTAAAAAGAAACAACTA-TCA-TATTGGTCTGAATGTAAACT  96

seq1  TAG-ACAGCAACTGTGGAAATCAGTATAGGCAGTCCTCAAAAGGCTGAAA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGCAACTGTGGAAATCAGTATAGGCAGTCCTCAAAAGGCTGAAA  146

seq1  TGGATCTGGCACACAATCCAACCATACTTCTCTTGCATTTATACCCAAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGGCACACAATCCAACCATACTTCTCTTGCATTTATACCCAAAA  196

seq1  GACTTGGCATCTTACTGAAAAATAAGTTCTCATTCATAGTTATTGCTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCATCTTACTGAAAAATAAGTTCTCATTCATAGTTATTGCTGCT  246

seq1  CTATTCATAAAAGCCAAAATTTGAAACTAACCTAAATATCATCAACTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATAAAAGCCAAAATTTGAAACTAACCTAAATATCATCAACTAAT  296

seq1  GAATGAATAATAAGAATAAGGTACATTTACACAGTGAAATATTGTCCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAATAAGAATAAGGTACATTTACACAGTGAAATATTGTCCAGA  346

seq1  TAGATACTAAGAAAAACAAAATTATGAGATTTCCAGTTAAGAGGGTAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAAGAAAAACAAAATTATGAGATTTCCAGTTAAGAGGGTAGAG  396

seq1  CTAAAAACACTTATCTTAAATGAGGTAACCCAGAAGCAAAAAAGACAAAT  448
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACTCTTATCTTAAATGAGGTAACCCAGAAGCAAAAAAGACAAAT  446

seq1  CTTTTCCCTGGTATGTAGATTTAGTCTGTACACTTTAGATATATGTGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTGGTATGTAGATTTAGTCTGTACACTTTAGATATATGTGTTT  496

seq1  AAATCATAAAATTTAGATAGCTAGTAAGTGACTGTAATACCTGAAAACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAAATTTAGATAGCTAGTAAGTGACTGTAATACCTGAAAACCT  546

seq1  GTTTCAGTCTGGTATAATTTCACTTATCTTTAAAGTCTATGTTTTTTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCTGGTATAATTTCACTTATCTTTAAAGTCTATGTTTTTTAAC  596

seq1  TTTACTTGTATTTAAAGTCCTGAAGAAAATTAGGTACTTGTGATATATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTATTTAAAGTCCTGAAGAAAATTAGGTACTTGTGATATATAT  646

seq1  ATAATCAATAATATTTGGATATATATGTGTGTGTGTGTTAACGTCTGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATAATATTTGGATATATATGTGTGTGTGTGTTAACGTCTGTGC  696

seq1  TAACTTCTTGAAAGGAATACTACACAAGAATTAATGTACAATTATAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTGAAAGGAATACTACACAAGAATTAATGTACAATTATAAATG  746

seq1  GCTACTACATTTATATCATATATGTAGGCACTTAACCTCTGGAGTCACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTACATTTATATCATATATGTAGGCACTTAACCTCTGGAGTCACCA  796

seq1  CATACAAATAGATTCAACAAATGGGATTGTGTAATCCTTCTTACAAAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATAGATTCAACAAATGGGATTGTGTAATCCTTCTTACAAAAAC  846

seq1  AAACAAGCAAACAAACAAACAAACAAAAATACTCCCTTCATCATTGTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCAAACAAACAAACAAACAAAAATACTCCCTTCATCATTGTCTG  896

seq1  AATGTTTGTACAGCATCTAAATCATCTATGTCTCTGTGGTCATTTGAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTACAGCATCTAAATCATCTATGTCTCTGTGGTCATTTGAATA  946

seq1  TATTTGGGCCAGGGAATGGCACTATTTGGAGGCGTTGTCTTATTAAAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGCCAGGGAATGGCACTATTTGGAGGCGTTGTCTTATTAAAGTA  996

seq1  GGTATGGCATTGTTGGAGGAAGTGTATCACTGTGGGCATAGGCTTTAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGCATTGTTGGAGGAAGTGTATCACTGTGGGCATAGGCTTTAAGA  1046

seq1  CCATCTTCCTAGAAGCCTTGAAGCCATTTTTCT  1081
      |||||||||||||||||||||||||||||||||
seq2  CCATCTTCCTAGAAGCCTTGAAGCCATTTTTCT  1079


seq1: chr1_50579401_50580562
seq2: B6Ng01-180A06.g_63_1198

seq1  GAATTCAACTATAAGTTTGTAAGCTATTACAATTAAGTGCTATACAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTATAAGTTTGTAAGCTATTACAATTAAGTGCTATACAGGCA  50

seq1  ACAGTTGAATGGACATGTAAGAAAATCTGTCTAAATATAAGATTGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAATGGACATGTAAGAAAATCTGTCTAAATATAAGATTGGATAC  100

seq1  AAAACATGATATATTACTTCTGCGCTAGTCCTTCCAGATTTTCAGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATATATTACTTCTGCGCTAGTCCTTCCAGATTTTCAGAGCTT  150

seq1  TAACCCACTCCCATCCTCAAACTATTATTACTTTTTGAAATTTTAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACTCCCATCCTCAAACTATTATTACTTTTTGAAATTTTAATAAT  200

seq1  GTCAGTGTTACTGAACTCATGAGTGTCTTTAGAACCCTGCAAAATCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTACTGAACTCATGAGTGTCTTTAGAACCCTGCAAAATCTTTG  250

seq1  ATCTTTTATTAAAAATATGTTTTATAAGTAACATATTTTTATATCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTAAAAATATGTTTTATAAGTAACATATTTTTATATCAAATT  300

seq1  AAAATATATTAAACAGTTGTATTACTTTGTGGGAAGTTAAATGTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTAAACAGTTGTATTACTTTGTGGGAAGTTAAATGTTAGAAA  350

seq1  TTCTTAGAATCATCTCTATATAATGCTTAAATATTGAATAGCCATACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAATCATCTCTATATAATGCTTAAATATTGAATAGCCATACAAT  400

seq1  CAAGTAATTTCATATTATAAAAATGTTTCCATTAAGTAAAGACCTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATTTCATATTATAAAAATGTTTCCATTAAGTAAAGACCTAATTA  450

seq1  AAACCATTTGTCTAAGAATAATTGAGATCTAGTGCTTGACTTGCAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTTGTCTAAGAATAATTGAGATCTAGTGCTTGACTTGCAGGTTT  500

seq1  AGAAGAAAACAGACTAATGAAATTTCCAAGCCTTACCTTATTTACTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACAGACTAATGAAATTTCCAAGCCTTACCTTATTTACTTCTT  550

seq1  ACCTAGGGTTTTGTAAGTTCAGGTTAAGTTAACTCACTGTCTTCTAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGTTTTGTAAGTTCAGGTTAAGTTAACTCACTGTCTTCTAATTC  600

seq1  TTAGGAAATAACCTCAAGTGATTCCTTCTCAAATATTTATTTATACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATAACCTCAAGTGATTCCTTCTCAAATATTTATTTATACATAC  650

seq1  ACACAATATATTTGCATGACTCCATTTTGCACTTATTTTTTAAATTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATATATTTGCATGACTCCATTTTGCACTTATTTTTTAAATTACCA  700

seq1  CTTCCCTGTCTAGCTATTTAATATGCATTTACCAATAAACTAAAATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTCTAGCTATTTAATATGCATTTACCAATAAACTAAAATATTC  750

seq1  CAGAAACAAAGCTCATGAAAATGTGTATTAGTTACTTTCTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAGCTCATGAAAATGTGTATTAGTTACTTTCTTTTTTTTTTT  800

seq1  TTCTTTATCATTTAAGTATTTGGTTC-TTTTTTTTTTCCCCCCCGAGGGT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTTATCATTTAAGTATTTGGTTCTTTTTTTTTTTCCCCCCCGAGGGT  850

seq1  TTTTATTTAAATACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAATACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAAT  900

seq1  GCTATTCCAAAAGTCACCCATACCCTCCCACCCACGCCCCTACCCACCCA  949
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  GCTATTCCAAAAGTCACCCATA-CCTCCCACCCACG-CCCTACCCACCCA  948

seq1  CTCCCACTTTTTGGCCCTAGCATTCCCCTGTACTGTGGCATTTAAAGTTT  999
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CTCCCAC-TTTTGGCCCTAGCA-TCCCCTGTACTGTGGCATTTAAAGTTT  996

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGCGATGACCATCTAGGCCATCTGC  1049
      |||||||| ||||| |||||||  ||||||||| ||||||||||||||||
seq2  GCAAGTCC-ATGGG-CTCTCTT--CAGCGATGAACATCTAGGCCATCTGC  1042

seq1  TGATACATATGCAGGTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTC  1099
      |||| |||||||| |||||||||| |||||| |||||||||| |||| ||
seq2  TGAT-CATATGCA-GTAGAGACAC-AGCTCT-GGGGGTACTGATTAG-TC  1087

seq1  ATATTGTTGTTCCACCTATAGGGTTGCAGATTCCCCCAGCTCCTTGGGTA  1149
      || |||||||||||| ||    |||||||||   ||||||| |||||   
seq2  AT-TTGTTGTTCCACTTA---AGTTGCAGAT---CCCAGCT-CTTGG---  1126

seq1  CTTTCTCTAGCTC  1162
          |||||||||
seq2  ---ACTCTAGCTC  1136


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