BAC Information

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BAC

Clone NameB6Ng01-180A18
Chromosome1 (Build37)
Map Location 110,564,951 - 110,565,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640
Downstream geneEG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A18.bB6Ng01-180A18.g
ACCGA006590GA006591
length1,230426
definitionB6Ng01-180A18.b B6Ng01-180A18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagacccatatcaaaacataataaaagtaatctacagcaaacca
gtagccaacatcaaagtaagtggtgagaagctagaagcaatcccactaaa
atcagggactagacaaagatgcccactttctgcctacctattcaacattg
cacttgaagtcctcgccagagcaattcaacaacaaaaggagatcaagggg
atacaaattggaaaggaagtcaaaatatcactatttgcagatgatatgat
agtatatataagtgaccctaaaaattccaccagagagctcctaaacttga
tacacagcttcagtgcggtagctgcatacaaaattaactcaaataaatca
atggcctttctctacacaaaggataaatgggctgagaaagaaatttggga
aaaaacacccttcacaatagtcacaaataatataaaataccttattgtga
ctataactaaggaagtgaaagatctgtataatgagaactccaagtctctg
aagaaagaaatcaaagaagttctttgacaagggagctaaaactatccagt
ggaaaaaaaacattttcaacaaatggtgctggcacaactggcagttatca
tgtagaagaatgtgaattgatccattcttatctccttgtacaaagctcaa
gtctaagtggatcaaagaactccacataaaaccagagacactgaaattta
tagaggagaatatgggtgaaaacctcgaagatatggacactgtggaaaaa
ttcttaaacagaacagcaatggcttgtgctgtaagatcaagaattgacaa
atgggacctcatgaaattgcaaagcttctgtaaggcaaaagacaccgtca
ataagacaaaaaggccaccaatagatttggaaaggatctttacccatcct
aaatgtgataggggactaatatccaatatatataaagaactcaataaagg
tggacttcagaaaatcaaataccccccattaatatatggggtacagagct
aaacaaagaattgtcaagtgaggcatactgaagggctgagatgcacctga
aaaatgttcaacatccttaatcatcaaggaaatgcaatcaaaacaacctg
agatccacctcacaaccagtcagaatggcctagatccaaaatcaaggtga
cagcgaatgctgtgagatgtggagaaagagacacctgccctctatggccg
tggtgggattgtcaaggccttgcttcacca

tgcaggcagaataaaagagaggggaaggataataggagccaaaggggtca
aggacatgagaatatggcccacagaatcaactaagcagggctcatagggg
ctcacagagacggatttgacagtaatggaggctgcatgggtttgagctag
gtcctctgcatatatgtcatggttttatagctcagtgttcttgtgggact
cctaacagtggcggtgggggttgtctctgcctcttgcctgttcttgggac
ctttttttctttctactctgttgcctgttccagccttgatatgagggtat
gtgcctagtcttactgtaactcattttagcgagtttggttgataatctta
ggaggcctgctcttttctgaaggaggaatagatctgaaggacaggagatg
tgtgtgtgtgtgtgtgtgtgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_110564951_110565461
seq2: B6Ng01-180A18.g_148_499 (reverse)

seq1  CCCCCACACACACACAC-CACACACACCTCCCTTGTCCCCCAAATCTTCT  49
      ||||||||||||||||| ||||||||| || | |||||  || |   |||
seq2  CCCCCACACACACACACACACACACACATCTCCTGTCCTTCAGA---TCT  47

seq1  AACCCTGTCTGCTGTTTTCTTTCAGAAAAGCACAAGCTTTC-AAAAGACA  98
      |  ||            || ||||||||||  || || | | || |    
seq2  ATTCC------------TCCTTCAGAAAAGAGCAGGCCTCCTAAGATTAT  85

seq1  GAAACAAACACAATAAAGCAAGATACTTTAAGGTGAGACA-AAACCCTCC  147
       || ||||| |  ||||   || |||  ||||   || || | |||||| 
seq2  CAACCAAACTCGCTAAAATGAGTTACAGTAAGACTAGGCACATACCCTCA  135

seq1  CATCCAGACTGGACAATGTAACTCAATAGGAGGAAAAAAACAGACATAAG  197
       ||| || |||||  | | |||  | ||| | ||||||||          
seq2  TATCAAGGCTGGAACAGGCAACAGAGTAGAAAGAAAAAAA----------  175

seq1  TCTGCTCCGTATTAGAAGTTATACACTAACCTATATGAATAGCTGAATGT  247
         | |||                          | ||| ||   |  | 
seq2  ---GGTCC-------------------------CAAGAACAGGCAAGAGG  197

seq1  CATTAGTTACTATTTCATTAACTTTTTTTTCCCAGTTGTGTTTGATTCTA  297
      ||                                         ||  | |
seq2  CA-----------------------------------------GAGACAA  206

seq1  CTCAATTTCTGTGGGCTATCCAGTCTCTTATTTCATGTCATCCAGGCAGT  347
      | |                |||                |  |||  | ||
seq2  CCC----------------CCA----------------CCGCCA--CTGT  222

seq1  TGAAGGCATAGTCTATTGTGGTATGAACACAAGTTAACCCACTGGTAAGA  397
      |  |||   ||||              ||||||  ||  ||||     ||
seq2  T--AGG---AGTC-------------CCACAAG--AA--CACT-----GA  245

seq1  GTTCCAAAACACCTCCAAGGTACTAGGCAAGACATATATGTGGAGGATCT  447
      | |  |||||                 || ||||||||||  ||||| ||
seq2  GCTATAAAAC-----------------CATGACATATATGCAGAGGACCT  278

seq1  -GATGTAA---AT--AGTGTGCTTTGTGCTTAA----GACTCTGTGAGCC  487
       | |  ||   ||  ||  | | ||    | ||    | |||||||||||
seq2  AGCTCAAACCCATGCAGCCTCCATTACTGTCAAATCCGTCTCTGTGAGCC  328

seq1  AATATGAACCCTACTTAGTTGATT  511
        ||||| |||| |||||||||||
seq2  CCTATGAGCCCTGCTTAGTTGATT  352


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