BAC Information

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BAC

Clone NameB6Ng01-180H09
Chromosome1 (Build37)
Map Location 39,376,754 - 39,377,442
singlet/doubletsinglet
Overlap geneNpas2
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3, LOC100041999
Downstream geneRpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180H09.b
ACCGA006886
length689
definitionB6Ng01-180H09.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagccaccatcctgcccgggcctcctttggagctgagttcatc
cttcagtaggtagggtagtgagctagcctgaatgccaacgacttccagaa
ccctccaacagtggcagagtggaggaactgtaaaggacaatcaaccctag
gatcctcaagtctgtgtgccagttaccaatgaagatcagaatgctccttc
ctgaacggagccctaagctcagtttgagtgtggaacagacatcctccctg
agggagtcatccagaaaacctgagaacccgctgggtgtagtaggacccct
gtgcagcactggagatgggaagcaagacccggcttcgtgtggaaagacca
gcttccccagcctttggcaagaagagcatctgttttgagtaagcaaaatg
gagagagagataaacactcctctataccatgcgtgcctccaaggtctctg
gccaaccggagaaagcagggctgtgccgacagtcagtggcaaatccttct
gagatgtaaggaagccagttgtaattagatgtatttttttctattattta
aacctaaataggtaattgaatccttaattaaggggctttaaactaccttg
ggatctgaagtgccagacagttattctaagtgctaagtataactgtgcag
cgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39376754_39377442
seq2: B6Ng01-180H09.b_41_729

seq1  GAATTCCCAGCCACCATCCTGCCCGGGCCTCCTTTGGAGCAGTGTTCATC  50
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GAATTCCCAGCCACCATCCTGCCCGGGCCTCCTTTGGAGCTGAGTTCATC  50

seq1  CTTCAGTAGGTAGGGTAGTGAGCTAGCCTGAATGCCAACGACTTCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAGGTAGGGTAGTGAGCTAGCCTGAATGCCAACGACTTCCAGAA  100

seq1  CCCTCCAACAGTGGCAGAGTGGAGGAACTGTAAAGGACAATCAACCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAACAGTGGCAGAGTGGAGGAACTGTAAAGGACAATCAACCCTAG  150

seq1  GATCCTCAAGTCTGTGTGCCAGTTACCAATGAAGATCAGAATGCTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAAGTCTGTGTGCCAGTTACCAATGAAGATCAGAATGCTCCTTC  200

seq1  CTGAACGGAGCCCTAAGCTCAGTTTGAGTGTGGAACAGACATCCTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGGAGCCCTAAGCTCAGTTTGAGTGTGGAACAGACATCCTCCCTG  250

seq1  AGGGAGTCATCCAGAAAACCTGAGAACCCGCTGGGTGTAGTAGGACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCATCCAGAAAACCTGAGAACCCGCTGGGTGTAGTAGGACCCCT  300

seq1  GTGCAGCACTGGAGATGGGAAGCAAGACCCGGCTTCGTGTGGAAAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCACTGGAGATGGGAAGCAAGACCCGGCTTCGTGTGGAAAGACCA  350

seq1  GCTTCCCCAGCCTTTGGCAAGAAGAGCATCTGTTTTGAGTAAGCAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCAGCCTTTGGCAAGAAGAGCATCTGTTTTGAGTAAGCAAAATG  400

seq1  GAGAGAGAGATAAACACTCCTCTATACCATGCGTGCCTCCAAGGTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATAAACACTCCTCTATACCATGCGTGCCTCCAAGGTCTCTG  450

seq1  GCCAACCGGAGAAAGCAGGGCTGTGCCGACAGTCAGTGGCAAATCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCGGAGAAAGCAGGGCTGTGCCGACAGTCAGTGGCAAATCCTTCT  500

seq1  GAGATGTAAGGAAGCCAGTTGTAATTAGATGTATTTTTTTCTATTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTAAGGAAGCCAGTTGTAATTAGATGTATTTTTTTCTATTATTTA  550

seq1  AACCTAAATAGGTAATTGAATCCTTAATTAAGGGGCTTTAAACTACCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAATAGGTAATTGAATCCTTAATTAAGGGGCTTTAAACTACCTTG  600

seq1  GGATCTGAAGTGCCAGAGAGTTATTCTAAGTGCTAAGTATGACTGTGCAG  650
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GGATCTGAAGTGCCAGACAGTTATTCTAAGTGCTAAGTATAACTGTGCAG  650

seq1  CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  689
      || ||||||||||||||||||||||||||||||||||||
seq2  CGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  689