BAC Information

Click to search

BAC

Clone NameB6Ng01-180H12
Chromosome1 (Build37)
Map Location 170,919,455 - 170,920,577
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180H12.bB6Ng01-180H12.g
ACCGA006889GA006890
length1,2021,137
definitionB6Ng01-180H12.b B6Ng01-180H12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatatttgaatggaatcacaccataaccagtattttgattctgac
ttatgtccttgaacattatgaattttttaaatttatcaaccaacagcaca
tcactgtaggtatagcattctggtctattgagcagaagcactcagttgtg
taaatgtagtgggatttgaatggccatttggttaatggctgtgtttattg
ttcatggctttacgtttccatgaggaagtttgtttgaaggtctgtgtgca
agtttttgaatgcatacttgtttcagtttctttaacagtgggtgtgttaa
atattttagatagcaaatatttcatttcaaggaaactgccgaacagttct
ttaatgtggttttatggaagccaccacattccaactgggactgtgtacat
cttccatggccctcacggcttcaccaccactgaatgcaggctgttgcgtt
gatttttttgctatcccaccgagtatgagaacaatctcattttcatatct
catcaaatcttccctgatgatttcccattctctcttaaatgaacttttaa
atcatattccttttgttgttgttgttgttgttgttcccagtacatgctaa
aatagttcttgtcaagatttgcaatgatcatcatcttggaaaaccaactg
ggaaattctacgcttcctcattacttcatatggcttatcagtcacttcca
tttgaagggctaactcttcttcccatagtgactgccttttctcatgactc
tctattgacttgatatcacccctgacttcctcaatgggactgcccctggc
aagtcatccctagaccactcctggtgagtgatatcgctgtgtcacactgc
tttaactatgaatgtattgtttctgtctctgactccccgttagagctatg
agtgagcaaacagtagctttacttgacaaggctgcttgggtgttttcagg
cgtaataactaaagctgttcataaacgaagactactgagttacatcaaat
tcttctgctttccatgtgtaaacgtgtttgttcatatattcaatttgctc
agcccacactataaatcatatctttgtttctttggttcattgtatctaac
actagaaatccttagcagtcatatagtcgaacccatggaatgatctagag
tacttccctctgagattttaatatgtaccattctcatcctaagtactcaa
tg
gaattctctctgaaaaacacactttgctcttatctttatcttctaacatt
taccgtatatctctctatcctcccttccatatccatcactacattccttt
acttattcaacaaatacttattaagcccatagtacatgctgagcacattc
catgcctcggtaagacccagagcaggagcaaagttacctatgccttggag
agcttatactgtcctgaaggaggaagatgtagtatgccaaatagaagtaa
atcccagagcaagatgaagtaaaaaggcaggtgaatacaaggttctggaa
ggacttcctgttcataggctatttaattcataggtacggattactctgaa
ggagagagtcccgggaatgtttatggaggctggtctggctacagcatacc
atgagaagaacaatgggcatgtgcttggggaagtgagaaaggagctgtga
tggggatgcatatcccactgtacacatgatagctttaaaaggagaagctg
catgacccagggaatacaattaaagatgtttggctctaaagtcgagaaca
cactgcaggacaccaaaacagagggccaacttggaggttattagagtaac
ccagggaagacaacaacagaacctcaaaggtcacagtgggaaagaactaa
tctacagacacttccatatgcgcgcatatatttaagatttagattctttt
tttccattttttattaggtatttagctcatttacatttccaatgctatac
caaaagtcccccatatccacccacccccactcccctgcccacccactccc
cctttttggccctggtgttcccctgtactggggcatataaagtttgcaag
tccaatggggcctctctttccagtgatggccgactaggccatcttttgga
tatatatgcagctagagtcaagagctcccggggtactggttagttcataa
tgttgtttccacctataggggttgcagatccctttagcttccttgggtac
ttttctcttagctcctctcaattgcgaccccccagatccattccaattag
cctgacttgtgagcatcactctgtgtttgctaggcccggcattagtcttc
acaagaaagacagctatatctggatccttcgataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170919455_170920577
seq2: B6Ng01-180H12.g_66_1202 (reverse)

seq1  TTTTATCGAAAGGACCCAGATATAGCTGTC--TCTTGTG-AGACT-ATGC  46
      |||||||| ||||| |||||||||||||||  ||||||| ||||| ||||
seq2  TTTTATCG-AAGGATCCAGATATAGCTGTCTTTCTTGTGAAGACTAATGC  49

seq1  CGGGGCCTAGCAAACACAGAAGTGGATGCTCAC-AGTCA-GCTAAT--GG  92
      | ||||||||||||||||| ||| ||||||||| ||||| ||||||  | 
seq2  C-GGGCCTAGCAAACACAG-AGT-GATGCTCACAAGTCAGGCTAATTGGA  96

seq1  ATGGATCATAGGGCTCCCAAT--GGAGGAGCT-AGAG-AAAGTACCCAAG  138
      |||||||   ||| || ||||   |||||||| |||| ||||||||||||
seq2  ATGGATCTGGGGGGTCGCAATTGAGAGGAGCTAAGAGAAAAGTACCCAAG  146

seq1  G-AGCTAAAGGGATCTGCAA-CCCTATAGGTGG-AACAACATTATGAACT  185
      | |||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  GAAGCTAAAGGGATCTGCAACCCCTATAGGTGGAAACAACATTATGAACT  196

seq1  AACCAGTACCCC-GGAGCTCTTGACTCTAGCTGCATATATAT-CAAAAGA  233
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  AACCAGTACCCCGGGAGCTCTTGACTCTAGCTGCATATATATCCAAAAGA  246

seq1  TGGCCTAGTCGGCCATCACTGGAAAGAGAGG-CCCATTGGACTTGCAAAC  282
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCCATTGGACTTGCAAAC  296

seq1  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGG  346

seq1  TGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCAT  396

seq1  TGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAGAATC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAGAATC  446

seq1  TAAATCTTAAATATATGCGCGCATATGGAAGTGTCTGTAGATTAGTTCTT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTAAATATATGCGCGCATATGGAAGTGTCTGTAGATTAGTTCTT  496

seq1  TCCCACTGTGACCTTTGAGGTTCTGTTGTTGTCTTCCCTGGGTTACTCTA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGTGACCTTTGAGGTTCTGTTGTTGTCTTCCCTGGGTTACTCTA  546

seq1  ATAACCTCCAAGTTGGCCCTCTGTTTTGGTGTCCTGCAGTGTGTTCTCGA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCCAAGTTGGCCCTCTGTTTTGGTGTCCTGCAGTGTGTTCTCGA  596

seq1  CTTTAGAGCCAAACATCTTTAATTGTATTCCCTGGGTCATGCAGCTTCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGCCAAACATCTTTAATTGTATTCCCTGGGTCATGCAGCTTCTC  646

seq1  CTTTTAAAGCTATCATGTGTACAGTGGGATATGCATCCCCATCACAGCTC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGCTATCATGTGTACAGTGGGATATGCATCCCCATCACAGCTC  696

seq1  CTTTCTCACTTCCCCAAGCACATGCCCATTGTTCTTCTCATGGTATGCTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACTTCCCCAAGCACATGCCCATTGTTCTTCTCATGGTATGCTG  746

seq1  TAGCCAGACCAGCCTCCATAAACATTCCCGGGACTCTCTCCTTCAGAGTA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGACCAGCCTCCATAAACATTCCCGGGACTCTCTCCTTCAGAGTA  796

seq1  ATCCGTACCTATGAATTAAATAGCCTATGAACAGGAAGTCCTTCCAGAAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTACCTATGAATTAAATAGCCTATGAACAGGAAGTCCTTCCAGAAC  846

seq1  CTTGTATTCACCTGCCTTTTTACTTCATCTTGCTCTGGGATTTACTTCTA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCACCTGCCTTTTTACTTCATCTTGCTCTGGGATTTACTTCTA  896

seq1  TTTGGCATACTACATCTTCCTCCTTCAGGACAGTATAAGCTCTCCAAGGC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATACTACATCTTCCTCCTTCAGGACAGTATAAGCTCTCCAAGGC  946

seq1  ATAGGTAACTTTGCTCCTGCTCTGGGTCTTACCGAGGCATGGAATGTGCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAACTTTGCTCCTGCTCTGGGTCTTACCGAGGCATGGAATGTGCT  996

seq1  CAGCATGTACTATGGGCTTAATAAGTATTTGTTGAATAAGTAAAGGAATG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTACTATGGGCTTAATAAGTATTTGTTGAATAAGTAAAGGAATG  1046

seq1  TAGTGATGGATATGGAAGGGAGGATAGAGAGATATACGGTAAATGTTAGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGGATATGGAAGGGAGGATAGAGAGATATACGGTAAATGTTAGA  1096

seq1  AGATAAAGATAAGAGCAAAGTGTGTTTTTCAGAGAGAATTC  1123
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGATAAGAGCAAAGTGTGTTTTTCAGAGAGAATTC  1137