BAC Information

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BAC

Clone NameB6Ng01-180I01
Chromosome1 (Build37)
Map Location 11,837,548 - 11,838,694
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneC030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180I01.bB6Ng01-180I01.g
ACCGA006915GA006916
length1,1531,168
definitionB6Ng01-180I01.b B6Ng01-180I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatgaaagaatagaaggaagaattgtagacccctaagggggta
ggaactccacagaaaggccaacagaatcaactaatctgggcccttggggc
tctcagagtctgaaccaccagccaaggaacattcatggctggaccgagcc
ctccctgcacatatgtagcaaatttgcatcttggtcttcatgtgggttct
gagcaactagagcaggggcaatgctaaaagctgtaacctgtatgtgcaat
atgttcttgtttggctgcattgtctggcctcagtggaagagtaagaacct
aacctcacaaaaacttgatgttccagtgaaggggatatctaggggtaccc
caccctctcagaagagaagggaaaaggagatgggagaaagactgtggaaa
ggggtgacacggaaggggcagtaagtgggatgtaaagtaagtaagtaagt
aagtaagtaagtaataataataataataataataataataataaattgct
gttactggcctacattgaagtttaagctaacagatttctaattaagggat
atcttatttctatatctacacaacaaagtgtgataatggaaattcttccc
aatatgattttctattcttcacaacataaaacacaatgattagataagta
ttttggttgaattctcgttagatagctaggaaattcagacactgaagaac
aatgtttctccatctatcctgagtgttgtgggggtgttatttttccattc
ctgcataaattcctattatctggagcttatttgtccttgattccaatagc
ttgagagcaataacaaagtgcaacaatacaattatctgtgttatttgtta
tacttattgtatgtacattgctatatttgtcagctagcatcatcagcaag
taaaaacaaaaaaatagatttttatcatagacctatagttgtatcatcca
ttcattcactttttaaaaatttatttatttaatttatttatttatataga
gattttctttatttaacatttcaaatattatcccctttcctggattcctc
ttccaaaaataacctatgcctccgcccctaacccttgctcccaaccctcc
accttccaatcttgctctggcattcccctatatactgggaagccatagat
cct

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgattgtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
tcctgccgtctactcctcttgggtgaatttgcttcctttttttctagagc
tttagatgtgttgtcaagctgctagtatgtgctctctcccgatttttctt
gaaaggcactcaatagctatgagtttccctctagaaatgcttcatgtgtc
ccaaaggttggtaacgttgtgcttcatttcattaaactctaaaagtcttt
aatttctttctatctctgacagtatcaatgagagagtgtggtcagtttcc
atggtgcagtggctccggtatatgttgctatgaaagatccgcccttaagg
tccagtgggtgaaatcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11837548_11838694
seq2: B6Ng01-180I01.b_43_1195 (reverse)

seq1  AGGATCTAT-GCT--CCAG--TATAGGGGAATGGCAGGACCAGGAATGGG  45
      ||||||||| |||  ||||  |||||||||||| || || || || ||| 
seq2  AGGATCTATGGCTTCCCAGTATATAGGGGAATGCCA-GAGCAAGATTGGA  49

seq1  AGTGGGAGGGTTGGGGAGC-AGGGGTAGGGGCGAGGGCATAAGGTATTTT  94
      ||  |||||||| |||||| |||| ||||||||  |||||| | ||||||
seq2  AGGTGGAGGGTT-GGGAGCAAGGGTTAGGGGCGGAGGCATAGGTTATTTT  98

seq1  TGG-AGAGGAAACCAGGAAAGGGGATAATATTTGAAATG-TAAATAAAGA  142
      ||| ||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TGGAAGAGGAATCCAGGAAAGGGGATAATATTTGAAATGTTAAATAAAGA  148

seq1  AAATCTCTAATATAAATAAATAAA-TAAATAAATAAATTTTTAAAAAGTG  191
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  AAATCTCT-ATATAAATAAATAAATTAAATAAATAAATTTTTAAAAAGTG  197

seq1  AATGAATGGATGATACAACTATAGGTCTATGATAAAAATCTATTTTTTTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGGATGATACAACTATAGGTCTATGATAAAAATCTATTTTTTTG  247

seq1  TTTTTACTTGCTGATGATGCTAGCTGACAAATATAGCAATGTACATACAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTGCTGATGATGCTAGCTGACAAATATAGCAATGTACATACAA  297

seq1  TAAGTATAACAAATAACACAGATAATTGTATTGTTGCACTTTGTTATTGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATAACAAATAACACAGATAATTGTATTGTTGCACTTTGTTATTGC  347

seq1  TCTCAAGCTATTGGAATCAAGGACAAATAAGCTCCAGATAATAGGAATTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCTATTGGAATCAAGGACAAATAAGCTCCAGATAATAGGAATTT  397

seq1  ATGCAGGAATGGAAAAATAACACCCCCACAACACTCAGGATAGATGGAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAATGGAAAAATAACACCCCCACAACACTCAGGATAGATGGAGA  447

seq1  AACATTGTTCTTCAGTGTCTGAATTTCCTAGCTATCTAACGAGAATTCAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTTCTTCAGTGTCTGAATTTCCTAGCTATCTAACGAGAATTCAA  497

seq1  CCAAAATACTTATCTAATCATTGTGTTTTATGTTGTGAAGAATAGAAAAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATACTTATCTAATCATTGTGTTTTATGTTGTGAAGAATAGAAAAT  547

seq1  CATATTGGGAAGAATTTCCATTATCACACTTTGTTGTGTAGATATAGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGGAAGAATTTCCATTATCACACTTTGTTGTGTAGATATAGAAA  597

seq1  TAAGATATCCCTTAATTAGAAATCTGTTAGCTTAAACTTCAATGTAGGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATCCCTTAATTAGAAATCTGTTAGCTTAAACTTCAATGTAGGCC  647

seq1  AGTAACAGCAATTTATTATTATTATTATTATTATTATTATTATTACTTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGCAATTTATTATTATTATTATTATTATTATTATTATTACTTAC  697

seq1  TTACTTACTTACTTACTTACTTTACATCCCACTTACTGCCCCTTCCGTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACTTACTTACTTACTTTACATCCCACTTACTGCCCCTTCCGTGT  747

seq1  CACCCCTTTCCACAGTCTTTCTCCCATCTCCTTTTCCCTTCTCTTCTGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTTCCACAGTCTTTCTCCCATCTCCTTTTCCCTTCTCTTCTGAG  797

seq1  AGGGTGGGGTACCCCTAGATATCCCCTTCACTGGAACATCAAGTTTTTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGTACCCCTAGATATCCCCTTCACTGGAACATCAAGTTTTTGT  847

seq1  GAGGTTAGGTTCTTACTCTTCCACTGAGGCCAGACAATGCAGCCAAACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGGTTCTTACTCTTCCACTGAGGCCAGACAATGCAGCCAAACAA  897

seq1  GAACATATTGCACATACAGGTTACAGCTTTTAGCATTGCCCCTGCTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATTGCACATACAGGTTACAGCTTTTAGCATTGCCCCTGCTCTAG  947

seq1  TTGCTCAGAACCCACATGAAGACCAAGATGCAAATTTGCTACATATGTGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGAACCCACATGAAGACCAAGATGCAAATTTGCTACATATGTGC  997

seq1  AGGGAGGGCTCGGTCCAGCCATGAATGTTCCTTGGCTGGTGGTTCAGACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGCTCGGTCCAGCCATGAATGTTCCTTGGCTGGTGGTTCAGACT  1047

seq1  CTGAGAGCCCCAAGGGCCCAGATTAGTTGATTCTGTTGGCCTTTCTGTGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCCCCAAGGGCCCAGATTAGTTGATTCTGTTGGCCTTTCTGTGG  1097

seq1  AGTTCCTACCCCCTTAGGGGTCTACAATTCTTCCTTCTATTCTTTCATAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTACCCCCTTAGGGGTCTACAATTCTTCCTTCTATTCTTTCATAA  1147

seq1  GAATTC  1147
      ||||||
seq2  GAATTC  1153


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