BAC Information

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BAC

Clone NameB6Ng01-180I22
Chromosome1 (Build37)
Map Location 174,058,168 - 174,270,966
singlet/doubletdoublet
Overlap genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9
Upstream geneSdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
Downstream geneKcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180I22.bB6Ng01-180I22.g
ACCGA006956GA006957
length311795
definitionB6Ng01-180I22.b B6Ng01-180I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,058,168 - 174,058,478)(174,270,173 - 174,270,966)
sequence
caagaaataaggctctctctcccctcttcttcatgttagatgaaatgtgt
aggtttttgtttgtttggttggttggtttggtttttcaaggcagggtttc
tctgtgtagccttggctgtcctggaactcactctgtagaccaggctggcc
tcgaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaag
gcgtgcgccaccacgacccagcagggtttttttttttttttaagggaatt
ttatagtgtgcatatagagatttctttgcacagcttttatttaattctct
ccccctaattc
gaattcaggacgggctgcgactgggaccgagactgtggcagacttggcct
gggttcctggggctacagggctctggcatcctgtacaatttccaagttat
tcgctgttccctgtgtagagagtgcggcgtggggtgcaaaagaggaccaa
acatcatctccatctgcagcaacttctcctgcaaggaaaaataagccgca
gtacggtgcaaagtgtgggagacatccaaagctgtggaagaagaaggaag
ggtcactatttagggggttccccacaaatgttcgaggaaagagataacgt
ctacgtaggttctaggaatgcaggaggcccaggtccaaggagatggcaga
aagaatactgatgacagaggaactgccattgtgaagtcctgtgggaacac
agacacatcagcttaggaaatagcgtcaaactcttcccatccactatgta
ctctcattatctgatctgttttgagtgatttgtaccctctatctgatgca
tggcatacactaaagaagaaaataaagacgtcccacttttattcataaca
gacattgaactacatatcaatagactgctttacttactgtgttaatataa
attcaggattgaaagcagggaaactatatatattttagtttagcttaaaa
ctctcaaaatgcataagatgaagaatacatgtgccttttgaaaaggcctc
tttggggctgagggtgttgtagctgagaggtagaatgcttgtcttgggtt
ccattcatcaccagcacagaaagaaagaatgggaggggggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174058168_174058478
seq2: B6Ng01-180I22.b_53_363

seq1  CAAGAAATAAGGCTCTCTCTCCCCTCTTCTTCATGTTAGATGAAATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAAGGCTCTCTCTCCCCTCTTCTTCATGTTAGATGAAATGTGT  50

seq1  AGGTTTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTTCAAGGCAGGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTTCAAGGCAGGGTTTC  100

seq1  TCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  150

seq1  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG  200

seq1  GCGTGCGCCACCACGACCCAGCAGGGTTTTTTTTTTTTTTTAAGGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACGACCCAGCAGGGTTTTTTTTTTTTTTTAAGGGAATT  250

seq1  TTATAGTGTGCATATAGAGATTTCTTTGCACAGCTTTTATTTAATTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGTGCATATAGAGATTTCTTTGCACAGCTTTTATTTAATTCTCT  300

seq1  CCTCCTAATTC  311
      || ||||||||
seq2  CCCCCTAATTC  311

seq1: chr1_174270173_174270966
seq2: B6Ng01-180I22.g_68_862 (reverse)

seq1  CTCCTCCCCCCTCCCATTC-TTCTTTCTGTGCTGGTGATGAATGGAACCC  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCTCCCCCCTCCCATTCTTTCTTTCTGTGCTGGTGATGAATGGAACCC  50

seq1  AAGACAAGCATTCTACCTCTCAGCTACAACACCCTCAGCCCCAAAGAGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGCATTCTACCTCTCAGCTACAACACCCTCAGCCCCAAAGAGGC  100

seq1  CTTTTCAAAAGGCACATGTATTCTTCATCTTATGCATTTTGAGAGTTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAAGGCACATGTATTCTTCATCTTATGCATTTTGAGAGTTTTA  150

seq1  AGCTAAACTAAAATATATATAGTTTCCCTGCTTTCAATCCTGAATTTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACTAAAATATATATAGTTTCCCTGCTTTCAATCCTGAATTTATA  200

seq1  TTAACACAGTAAGTAAAGCAGTCTATTGATATGTAGTTCAATGTCTGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGTAAGTAAAGCAGTCTATTGATATGTAGTTCAATGTCTGTTA  250

seq1  TGAATAAAAGTGGGACGTCTTTATTTTCTTCTTTAGTGTATGCCATGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAGTGGGACGTCTTTATTTTCTTCTTTAGTGTATGCCATGCAT  300

seq1  CAGATAGAGGGTACAAATCACTCAAAACAGATCAGATAATGAGAGTACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAGGGTACAAATCACTCAAAACAGATCAGATAATGAGAGTACAT  350

seq1  AGTGGATGGGAAGAGTTTGACGCTATTTCCTAAGCTGATGTGTCTGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGGGAAGAGTTTGACGCTATTTCCTAAGCTGATGTGTCTGTGTT  400

seq1  CCCACAGGACTTCACAATGGCAGTTCCTCTGTCATCAGTATTCTTTCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGACTTCACAATGGCAGTTCCTCTGTCATCAGTATTCTTTCTGC  450

seq1  CATCTCCTTGGACCTGGGCCTCCTGCATTCCTAGAACCTACGTAGACGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTGGACCTGGGCCTCCTGCATTCCTAGAACCTACGTAGACGTT  500

seq1  ATCTCTTTCCTCGAACATTTGTGGGGAACCCCCTAAATAGTGACCCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCCTCGAACATTTGTGGGGAACCCCCTAAATAGTGACCCTTCC  550

seq1  TTCTTCTTCCACAGCTTTGGATGTCTCCCACACTTTGCACCGTACTGCGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCACAGCTTTGGATGTCTCCCACACTTTGCACCGTACTGCGG  600

seq1  CTTATTTTTCCTTGCAGGAGAAGTTGCTGCAGATGGAGATGATGTTTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTCCTTGCAGGAGAAGTTGCTGCAGATGGAGATGATGTTTGGT  650

seq1  CCTCTTTTGCACCCCACGCCGCACTCTCTACACAGGGAACAGCGAATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTGCACCCCACGCCGCACTCTCTACACAGGGAACAGCGAATAAC  700

seq1  TTGGAAATTGTACAGGATGCCAGAGCCCTGTAGCCCCAGGAACCCAGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATTGTACAGGATGCCAGAGCCCTGTAGCCCCAGGAACCCAGGCC  750

seq1  AAGTCTGCCACAGTCTCGGTCCCAGTCGCAGCCCGTCCTGAATTC  794
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCCACAGTCTCGGTCCCAGTCGCAGCCCGTCCTGAATTC  795