BAC Information

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BAC

Clone NameB6Ng01-180J05
Chromosome1 (Build37)
Map Location 187,943,185 - 188,069,032
singlet/doubletdoublet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180J05.bB6Ng01-180J05.g
ACCGA006968GA006969
length1,143964
definitionB6Ng01-180J05.b B6Ng01-180J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,943,185 - 187,944,324)(188,068,074 - 188,069,032)
sequence
gaattctttaaggtgaatgtgttatctttacagaacatgtgaaggtcccg
cccttggagtgcagcatctgatgtttgagatggtggcagttacatgaaat
ccagcccattaccccttttctcatttatgaccctgaatgtgtcttctctg
ttggttaattaattaattaataatttttacttattcttattactgggtgc
atgtatgtgaataacctgctggtgtgtgtgtcacggtacacatgtggagg
tcagaggacagctttgtggaataagttccctccttctacttgcaagtgtg
ttccaagtgagtcactaccaggcttattcagtgagtgccttaaccagctc
acccaccttgctaacttggttgctatttatccactgctgcattttgcaaa
acacaactatgcataacaaatgcacatttgtcaggaagccccagccatag
gtgacttaatacattttataaattggcagagcaaattccctttatccatt
tatgaaggaaactaggaaaaacttaaagctcccaacccttatcaaataat
aaatcattttgaactgagactgaacctttaatcgttgccttcattccagg
gggtttaagctttcgagtttaggccttctacatgcaggggtgtgggcttt
ccttcctcaccactgtggcactctcgggatgtgcaagctccctttctctt
tcagtcaccgggggcatcacatgctgggctgggaagctttggtaaaggag
agagaggagttgctcaaataaagctttggagtgttgcggggttgtcctga
tggatgaataacagttagagtgattaatgctgaagcaatgcccagactct
tggggaggattgcaaatgggaacttttattctcctgtattaatttgttgt
ctcagagtcttactgtgtccatctgcaaatttagatcttctcctgaaaat
ttctagcctccatacaatctaatctaggcctggaaggttttctgcctctg
agacttactgctgaataggcttaccccttctagtctttctgagttctgac
ttctttcttcttctctctcttcttttctctctactgcactgctttctagg
tagcttcctttcctcttcctctttcctgtgaagaatgggacat
gaattcagatttttctctcattcagagccccaattcagagccttgattct
gtaatatatatattacagacttgagactctgaatgagagaaaaactgata
catatacatgtatgtatatatgtattatatatacatatacatacacacac
atatatatatgatacatatacatgtaaaatctgatacatatacatatata
tatatatatatatatatatatatatatatatatacatacataatataatc
agcactagggactgaagccaggacattgtacatgctgaggagaggctcta
ccggtgagctacatccccaggtttaattgtcttttttaaaagaacattgt
ttttcagacaaggtctctaagttagtgcacagctgacctttagttcactg
tacagcagcgatatccttgaactgcagaatgctctcacacagaagcccct
atttttctttaaggagggcttgggaatttattaatttaattcttctttct
taaatgtcttctaatgtaaagttctgaaaactttgttccttttagttcat
atctctaattattccacctcgtccaagttttttatttcttatgcctagat
gttccatcatctttgcctgattcttctcccagggttcactactgcaagaa
tagacattagaggtccttttaggtggagagatatagacaagaatctagtc
tgcccttgagctatgggatcagtaagataaaaacaaaattttcctcttcc
tagattaattaattattctttgagagttatgcaagagtgtgcatggtctc
atcacctcagcagtgtgtgatcaaacctgataaatggaagggaggagaaa
acgaaaacacagcattacgacccgtgtgcaaatcgcttgttcagcacagc
tcaaaagaaagccagggactgttttccccatctctgtgagaaaagatctc
gatatctgtcacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187943185_187944324
seq2: B6Ng01-180J05.b_44_1186

seq1  GAATTCTTTAAGGTGAATGTGTTATCTTTACAGAACATGTGAAGGTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGGTGAATGTGTTATCTTTACAGAACATGTGAAGGTCCCG  50

seq1  CCCTTGGAGTGCAGCATCTGATGTTTGAGATGGTGGCAGTTACATGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGAGTGCAGCATCTGATGTTTGAGATGGTGGCAGTTACATGAAAT  100

seq1  CCAGCCCATTACCCCTTTTCTCATTTATGACCCTGAATGTGTCTTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCATTACCCCTTTTCTCATTTATGACCCTGAATGTGTCTTCTCTG  150

seq1  TTGGTTAATTAATTAATTAATAATTTTTACTTATTCTTATTACTGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATTAATTAATTAATAATTTTTACTTATTCTTATTACTGGGTGC  200

seq1  ATGTATGTGAATAACCTGCTGGTGTGTGTGTCACGGTACACATGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGAATAACCTGCTGGTGTGTGTGTCACGGTACACATGTGGAGG  250

seq1  TCAGAGGACAGCTTTGTGGAATAAGTTCCCTCCTTCTACTTGCAAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGACAGCTTTGTGGAATAAGTTCCCTCCTTCTACTTGCAAGTGTG  300

seq1  TTCCAAGTGAGTCACTACCAGGCTTATTCAGTGAGTGCCTTAACCAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGAGTCACTACCAGGCTTATTCAGTGAGTGCCTTAACCAGCTC  350

seq1  ACCCACCTTGCTAACTTGGTTGCTATTTATCCACTGCTGCATTTTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTTGCTAACTTGGTTGCTATTTATCCACTGCTGCATTTTGCAAA  400

seq1  ACACAACTATGCATAACAAATGCACATTTGTCAGGAAGCCCCAGCCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTATGCATAACAAATGCACATTTGTCAGGAAGCCCCAGCCATAG  450

seq1  GTGACTTAATACATTTTATAAATTGGCAGAGCAAATTCCCTTTATCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTAATACATTTTATAAATTGGCAGAGCAAATTCCCTTTATCCATT  500

seq1  TATGAAGGAAACTAGGAAAAACTTAAAGCTCCCAACCCTTATCAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGAAACTAGGAAAAACTTAAAGCTCCCAACCCTTATCAAATAAT  550

seq1  AAATCATTTTGAACTGAGACTGAACCTTTAATCGTTGCCTTCATTCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTTGAACTGAGACTGAACCTTTAATCGTTGCCTTCATTCCAGG  600

seq1  GGGTTTAAGCTTTCGAGTTTAGGCCTTCTACATGCAGGGGTGTGGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAGCTTTCGAGTTTAGGCCTTCTACATGCAGGGGTGTGGGCTTT  650

seq1  CCTTCCTCACCACTGTGGCACTCTCGGGATGTGCAAGCTCCCTTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCACCACTGTGGCACTCTCGGGATGTGCAAGCTCCCTTTCTCTT  700

seq1  TCAGTCACCGGGGGCATCACATGCTGGGCTGGGAAGCTTTGGTAAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCGGGGGCATCACATGCTGGGCTGGGAAGCTTTGGTAAAGGAG  750

seq1  AGAGAGGAGTTGCTCAAATAAAGCTTTGGAGTGTTGCGGGGTTGTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGTTGCTCAAATAAAGCTTTGGAGTGTTGCGGGGTTGTCCTGA  800

seq1  TGGATGAATAACAGTTAGAGTGATTAATGCTGAAGCAATGCCCAGACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATAACAGTTAGAGTGATTAATGCTGAAGCAATGCCCAGACTCT  850

seq1  TGGGGAGGATTGCAAAT-GGAACTTTTATTCTCCTGTATTAA-TTGTTGT  898
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TGGGGAGGATTGCAAATGGGAACTTTTATTCTCCTGTATTAATTTGTTGT  900

seq1  CTCAGAGTCTTACTGTGTCCATCTGCAAATTTAGATCTTCTCCTGAAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTCTTACTGTGTCCATCTGCAAATTTAGATCTTCTCCTGAAAAT  950

seq1  TTCTAGCCTCCATACAATCTAATCTAGGCCTGGAAGGTTTTCTGCCTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTCCATACAATCTAATCTAGGCCTGGAAGGTTTTCTGCCTCTG  1000

seq1  AGACTTACTGCTGAATAGGCTTACCCCTTCTAGTTCTTTCTGAGTTCTGA  1048
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACTTACTGCTGAATAGGCTTACCCCTTCTAG-TCTTTCTGAGTTCTGA  1049

seq1  CTTCTTTCT--CTCTCTCTCTTCCTTTTCTCTCTACCTGCACTGCTTTCT  1096
      |||||||||   |||||||||| |||||||||||| ||||||||||||| 
seq2  CTTCTTTCTTCTTCTCTCTCTT-CTTTTCTCTCTA-CTGCACTGCTTTC-  1096

seq1  TAAGTAGCTTCCCTTTCCTCT--CTC-TTCTCGTG-AGAATGGGACAT  1140
      || ||||||| ||||||||||  ||| |||  ||| ||||||||||||
seq2  TAGGTAGCTT-CCTTTCCTCTTCCTCTTTCCTGTGAAGAATGGGACAT  1143

seq1: chr1_188068074_188069032
seq2: B6Ng01-180J05.g_71_1034 (reverse)

seq1  CCGTGACAGATATCGAGATCTTTTCTCACAGAGATGGGGAAAACAGT-CC  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCGTGACAGATATCGAGATCTTTTCTCACAGAGATGGGGAAAACAGTCCC  50

seq1  TGGCTTTCTTTTGGGCTGTGCTG-ACCAGCGATTTGCACACGGGTCGTAA  98
      ||||||||||||| ||||||||| || |||||||||||||||||||||||
seq2  TGGCTTTCTTTTGAGCTGTGCTGAACAAGCGATTTGCACACGGGTCGTAA  100

seq1  TGCTGTGTTTTCGTTTTCTCCT-CCTTCCATTTATCAGGTTTGATCACAC  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTGTGTTTTCGTTTTCTCCTCCCTTCCATTTATCAGGTTTGATCACAC  150

seq1  ACTGCTGAGGTGATGAGACCATGCACACTCTTGCATAACTCTCAAAGAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGGTGATGAGACCATGCACACTCTTGCATAACTCTCAAAGAAT  200

seq1  AATTAATTAATCTAGGAAGAGGAAAATTTTGTTTTTATCTTACTGATCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAATCTAGGAAGAGGAAAATTTTGTTTTTATCTTACTGATCCC  250

seq1  ATAGCTCAAGGGCAGACTAGATTCTTGTCTATATCTCTCCACCTAAAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAAGGGCAGACTAGATTCTTGTCTATATCTCTCCACCTAAAAGG  300

seq1  ACCTCTAATGTCTATTCTTGCAGTAGTGAACCCTGGGAGAAGAATCAGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATGTCTATTCTTGCAGTAGTGAACCCTGGGAGAAGAATCAGGC  350

seq1  AAAGATGATGGAACATCTAGGCATAAGAAATAAAAAACTTGGACGAGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATGGAACATCTAGGCATAAGAAATAAAAAACTTGGACGAGGTG  400

seq1  GAATAATTAGAGATATGAACTAAAAGGAACAAAGTTTTCAGAACTTTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTAGAGATATGAACTAAAAGGAACAAAGTTTTCAGAACTTTACA  450

seq1  TTAGAAGACATTTAAGAAAGAAGAATTAAATTAATAAATTCCCAAGCCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGACATTTAAGAAAGAAGAATTAAATTAATAAATTCCCAAGCCCT  500

seq1  CCTTAAAGAAAAATAGGGGCTTCTGTGTGAGAGCATTCTGCAGTTCAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAAAAATAGGGGCTTCTGTGTGAGAGCATTCTGCAGTTCAAGG  550

seq1  ATATCGCTGCTGTACAGTGAACTAAAGGTCAGCTGTGCACTAACTTAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGCTGCTGTACAGTGAACTAAAGGTCAGCTGTGCACTAACTTAGAG  600

seq1  ACCTTGTCTGAAAAACAATGTTCTTTTAAAAAAGACAATTAAACCTGGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTGAAAAACAATGTTCTTTTAAAAAAGACAATTAAACCTGGGG  650

seq1  ATGTAGCTCACCGGTAGAGCCTCTCCTCAGCATGTACAATGTCCTGGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTCACCGGTAGAGCCTCTCCTCAGCATGTACAATGTCCTGGCTT  700

seq1  CAGTCCCTAGTGCTGATTATATTATGTATG--TATATATATATATATATA  745
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CAGTCCCTAGTGCTGATTATATTATGTATGTATATATATATATATATATA  750

seq1  TATATATATATATATATATATGTATATGTATCAGATTTTACATGTATATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATGTATATGTATCAGATTTTACATGTATATG  800

seq1  TATCATATATATATGTGTGTGTATGTATATGTATATATAATACATATATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATATATATGTGTGTGTATGTATATGTATATATAATACATATATA  850

seq1  CATACATGTATATGTATCAGTTTTTCTCTCATTCAGAGTCTCAAGTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTATATGTATCAGTTTTTCTCTCATTCAGAGTCTCAAGTCTGT  900

seq1  AATATATATATTACAGAATCAAGGCTCTGAATTGGGGCTCTGAATGAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATTACAGAATCAAGGCTCTGAATTGGGGCTCTGAATGAGAG  950

seq1  AAAAATCTGAATTC  959
      ||||||||||||||
seq2  AAAAATCTGAATTC  964