BAC Information

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BAC

Clone NameB6Ng01-180L21
Chromosome1 (Build37)
Map Location 14,743,611 - 14,744,651
singlet/doubletsinglet
Overlap geneMsc
Upstream geneLOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneSmt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180L21.bB6Ng01-180L21.g
ACCGA007092GA007093
length1,0201,044
definitionB6Ng01-180L21.b B6Ng01-180L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgaattagtattggtaaagatcctttcccaatctgttggtggcct
ttctgtcttactgacagtgtcttttgccttacagaagctttgtaatttta
gaaggtcccatttgtcaattctcgatcttacagcacaagctattgctgtt
ctattcaggaattttccccctgtacccatatcttcaaggctttcccgcac
tttctcctctataagtttcagtgtctctggatttttgtggcattccttga
tccacttagatttgaccttattacaaggagataagaatggatctattccc
atttttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttttgccactggatggtttttgctcctttgtcaaagatcaagt
gatcataagtgtgtgggttcatttctgggtcttcaattctattccattga
tctacttgtctgttgctataatagtaccatgtagtttttaatcacaattg
ctctgtagtacagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggtttttttgttattccaga
tgaatttgcacattgccctttctaattcgttgaagaattgagttggaatt
ttgatggggattgcgttgaatctgtacattacttttggcaagatagccct
ttttactatattgatcctgccaattcatgagcatggggagatctttcatc
ttctgagatcttctttgatttctttcttcacagacttgaaagctcttatc
atatagatcttcacaccaaggtatttcatatttatttgtgactatttttg
aagggtgttgttcccaaatttcttctcagcctgttatcccttggtgataa
gaaagctctttgacttgttc
gaattctaaactctcgcccttttcacagaaaaatcatgtgggcaacccat
gaggaaagcatgaaggtacgctgtcgctctcaaataatcagtaaccagta
ggattaaaaatctaatcaaaggacaagacacacacatttccagaacgcta
ataaaagcgagggaccgccgggattcccttgggaaagtggtttcattttg
tgatcgtttctcctccgtaactgatgctcatttcaattttttcagacgtg
gccattcgtggtctctggacgcccagactctgacagcaaagacgtttctg
cagccaacaggctttgtggaacttccgcttagagggacagggcagttaga
tggattgtggtaaacgcaaaggactgggccaaggaagtcccactggattc
tggaccttctcctttccctgggcctgtgaacaagacaggagacaagtgtg
gtttgccctcctggagcgcaggtggccatgggtgccccaaatcagtgcaa
acttctgtaaccaaagaaagcccagtttcaggggaagaatacgtggacca
ggtaaaaacctagggctttagctctgatcacaaccccctgcctgctatct
gagtccagtgcagaaacgggttggttttgaagctaatcttgattgccttg
tggttgatggcaaggtcctgcacagccaggtccttctgtgaccgtggatg
agagctgtttcccagcactagaaagaaggccggcattagagctcttcggg
ggcctgtcactaagggcagtgttgctacagacagtggcatactctttcct
gggcaggacatgttgaggtggagacattaactccaggtgctggttttgct
cgaaatctcttgcagactggggttcatttcctgagttccctcctctgttt
aatcagtgttgggtctccattcagtgagtgcagcttgtttatggggtctc
agctccttcccaacccacactgtcccttatttggggacattgtgcttcac
cccctctatgttccaccctgcacagcaatagctttctgtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14743611_14744651
seq2: B6Ng01-180L21.g_71_1114 (reverse)

seq1  ACCCCACAGAAGGCTA-TGCTGTGGCAGGGTGAGACAATTAGA-GGGGTG  48
      ||||||||||| |||| |||||| ||||||||  |||  |||| ||||||
seq2  ACCCCACAGAAAGCTATTGCTGT-GCAGGGTGGAACA--TAGAGGGGGTG  47

seq1  AAGCAC-ATGTCCCCAAATAGGGGACAGTGTGGG-TGGGAAGGAGCTGAG  96
      |||||| ||||||||||||| ||||||||||||| |||||||||||||||
seq2  AAGCACAATGTCCCCAAATAAGGGACAGTGTGGGTTGGGAAGGAGCTGAG  97

seq1  ACCCCATAAACAAGCTGCACTCACTGAATGGAGACCCAACACTGATTAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATAAACAAGCTGCACTCACTGAATGGAGACCCAACACTGATTAAA  147

seq1  CAGAGGAGGGAACTCAGGAAATGAACCCCAGTCTGC-AGAGATTTCGAGC  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGAGGAGGGAACTCAGGAAATGAACCCCAGTCTGCAAGAGATTTCGAGC  197

seq1  AAAACCAGCACCTGGAGTTAATGTCTCCACCTCAACATGTCCTGCCCAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGCACCTGGAGTTAATGTCTCCACCTCAACATGTCCTGCCCAGG  247

seq1  -AAGAGTATGCCACTGTCTGTAGCAACACTGCCCTTAGTGACAGGCCCCC  294
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATGCCACTGTCTGTAGCAACACTGCCCTTAGTGACAGGCCCCC  297

seq1  GAAGAGCTCTAATGCCGGCCTTCTTTCTAGTGCTGGGAAACAGCTCTCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTCTAATGCCGGCCTTCTTTCTAGTGCTGGGAAACAGCTCTCAT  347

seq1  CCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTTGCCATCAACCACAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTTGCCATCAACCACAA  397

seq1  GGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTCAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTCAGA  447

seq1  TAGCAGGCAGGGGGTTGTGATCAGAGCTAAAGCCCTAGGTTTTTACCTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAGGGGGTTGTGATCAGAGCTAAAGCCCTAGGTTTTTACCTGG  497

seq1  TCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTG  547

seq1  CACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCAAACCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCAAACCAC  597

seq1  ACTTGTCTCCTGTCTTGTTCACAGGCCCAGGGAAAGGAGAAGGTCCAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTCCTGTCTTGTTCACAGGCCCAGGGAAAGGAGAAGGTCCAGAA  647

seq1  TCCAGTGGGACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGGACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCT  697

seq1  AACTGCCCTGTCCCTCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTGCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCTGTCCCTCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTGCAG  747

seq1  AAACGTCTTTGCTGTCAGAGTCTGGGCGTCCAGAGACCACGAATGGCCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTTTGCTGTCAGAGTCTGGGCGTCCAGAGACCACGAATGGCCAC  797

seq1  GTCTGAAAAAATTGAAATGAGCATCAGTTACGGAGGAGAAACGATCACAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAAAATTGAAATGAGCATCAGTTACGGAGGAGAAACGATCACAA  847

seq1  AATGAAACCACTTTCCCAAGGGAATCCCGGCGGTCCCTCGCTTTTATTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACCACTTTCCCAAGGGAATCCCGGCGGTCCCTCGCTTTTATTAG  897

seq1  CGTTCTGGAAATGTGTGTGTCTTGTCCTTTGATTAGATTTTTAATCCTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGGAAATGTGTGTGTCTTGTCCTTTGATTAGATTTTTAATCCTAC  947

seq1  TGGTTACTGATTATTTGAGAGCGACAGCGTACCTTCATGCTTTCCTCATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTGATTATTTGAGAGCGACAGCGTACCTTCATGCTTTCCTCATG  997

seq1  GGTTGCCCACATGATTTTTCTGTGAAAAGGGCGAGAGTTTAGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCACATGATTTTTCTGTGAAAAGGGCGAGAGTTTAGAATTC  1044