BAC Information

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BAC

Clone NameB6Ng01-180L23
Chromosome1 (Build37)2 (Build37)
Map Location 48,554,331 - 48,554,86688,229,902 - 88,230,928
singlet/doubletsingletsinglet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180L23.bB6Ng01-180L23.g
ACCGA007096GA007097
length1,0371,032
definitionB6Ng01-180L23.b B6Ng01-180L23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,554,331 - 48,554,866)(88,229,902 - 88,230,928)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttccttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatgatcaacttgatcctgattcatctt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcttcgtttggttaattcttttg
aatagttcttcttgtttccacttgggttgatttcacccttgagtttgatt
atttcttgccgtctactcctcttgggtgaaattgcttccctttttttcta
gggcttttagatgtcttgtcaagctgctagtatgtgctgtctccctttct
tcttggaggcactcagagctatgagttttcctctagaaatgcttcattga
gtcccataggtttgggtaccgtgtgggcttcattttc

gaattcaccttgagaacttgacactggtattttggaaactgatagtaata
tatacactttaagatgacatgatgagctgggtagcggtggcgcatgcctc
taatcccagcacttcggaggcagaggcaggtggatttctgagtttgaggc
cagcctagtctacagagtgagttccaggacagctagggatacacagagaa
accctgtattgaaaaaacaaaacaaaacaaacaaacaaacaagacatgat
ggctaaacttcattgtcaacttggcacacctgggaagagggaccctcagg
caaaaaatcatttccatatgattggtctgtgagaatgtctgtgtggcatt
tatttgattgtttattgatatagaaaatcccaggttaagttgggccattc
catctctaggaaattgtgtctggactatataagaaggactacagtttatg
agtctgaggctaacaactgagcagcattcctctatggattctgcttcagt
ccttgcctccagtttctggccttgtcttgtcttgtcttgtcatcaacaat
tgttttttgtttgtttgtttgtttgttttttgtttttgtttgtgtttttt
gtaagtcaataaaccttttcctttccaaatttatttaggtcagtgtctta
tcacagtaacaaaaaacaaattacaacagatagtctagaatggttgagtg
acttttatttattaattaaaatgtagctgactcaagtgtttgatcaagac
aacggtagggatgctaaaatacaaacaaaatacatgattgctctactcaa
catgttggatgtaggtacatagttgatttaaaaaaaaatctagaatgctt
tttttatgtggtaatattttatttctgtgagttgaaaaatgaattattta
tatacatattaatacacaggtattttataaatataagttaaaatcagtgg
agactaaaatcacattttttcaattaagaatgaaattttatctatctatc
tagtgattcccaattctaaatacaagatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48554331_48554866
seq2: B6Ng01-180L23.b_549_1085 (reverse)

seq1  GAAAATGAAG-CCACAACGTACCCAAACCTATGGGACACAATGAAAGCAT  49
      |||||||||| |||||  ||||||||||||||||||| ||||| ||||||
seq2  GAAAATGAAGCCCACACGGTACCCAAACCTATGGGACTCAATG-AAGCAT  49

seq1  TTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAG  99
      |||| ||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TTCT-AGAGGAAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAA-GGGAG  97

seq1  ACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAA  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGCACATACTAGCAGCTTGACAAGACATCTAAAAGCCCTAGAAAAAAA  147

seq1  -GGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTC  198
       |||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GGGAAGCAATTTCACCCAAGAGGAGTAGACGGCAAGAAATAATCAAACTC  197

seq1  AGGGGTGAAATCAA-CCAAGTGGAAACAAGAAGAACTATTC-AAAGAATT  246
      | |||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AAGGGTGAAATCAACCCAAGTGGAAACAAGAAGAACTATTCAAAAGAATT  247

seq1  AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACC  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACGAAGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACC  297

seq1  CTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAA  347

seq1  TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAAC  397

seq1  ACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCT  447

seq1  GGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGCTGAATC  496
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGATGAATC  497

seq1  AGGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAA  536
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAA  537


seq1: chr2_88229902_88230928
seq2: B6Ng01-180L23.g_66_1097

seq1  GAATTCACCTTGAGAACTTGACACTGGTATTTTGGAAACTGATAGTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGAGAACTTGACACTGGTATTTTGGAAACTGATAGTAATA  50

seq1  TATACACTTTAAGATGACATGATGAGCTGGGTAGCGGTGGCGCATGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTTAAGATGACATGATGAGCTGGGTAGCGGTGGCGCATGCCTC  100

seq1  TAATCCCAGCACTTCGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTCGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGC  150

seq1  CAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCTAGGGATACACAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCTAGGGATACACAGAGAA  200

seq1  ACCCTGTATTGAAAAAACAAAACAAAACAAACAAACAAACAAGACATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTATTGAAAAAACAAAACAAAACAAACAAACAAACAAGACATGAT  250

seq1  GGCTAAACTTCATTGTCAACTTGGCACACCTGGGAAGAGGGACCCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACTTCATTGTCAACTTGGCACACCTGGGAAGAGGGACCCTCAGG  300

seq1  CAAAAAATCATTTCCATATGATTGGTCTGTGAGAATGTCTGTGTGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATCATTTCCATATGATTGGTCTGTGAGAATGTCTGTGTGGCATT  350

seq1  TATTTGATTGTTTATTGATATAGAAAATCCCAGGTTAAGTTGGGCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTGTTTATTGATATAGAAAATCCCAGGTTAAGTTGGGCCATTC  400

seq1  CATCTCTAGGAAATTGTGTCTGGACTATATAAGAAGGACTACAGTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAGGAAATTGTGTCTGGACTATATAAGAAGGACTACAGTTTATG  450

seq1  AGTCTGAGGCTAACAACTGAGCAGCATTCCTCTATGGATTCTGCTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGGCTAACAACTGAGCAGCATTCCTCTATGGATTCTGCTTCAGT  500

seq1  CCTTGCCTCCAGTTTCTGGCCTTGTCTTGTCTTGTCTTGTCATCAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCCAGTTTCTGGCCTTGTCTTGTCTTGTCTTGTCATCAACAAT  550

seq1  TGTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTGTTTGTGTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTGTTTGTGTTTTTT  600

seq1  GTAAGTCAATAAACCTTTTCCTTTCCAAATTTATTTAGGTCAGTGTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAATAAACCTTTTCCTTTCCAAATTTATTTAGGTCAGTGTCTTA  650

seq1  TCACAGTAACAAAAAACAAATTACAACAGATAGTCTAGAATGGTTGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAACAAAAAACAAATTACAACAGATAGTCTAGAATGGTTGAGTG  700

seq1  ACTTTTATTTATTAATTAAAATGTAGCTGACTCAAGTGTTTGATCAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTTATTAATTAAAATGTAGCTGACTCAAGTGTTTGATCAAGAC  750

seq1  AACGGTA-GGATGCTAAAATACAAACAAAATACATGATTGCTCTACTCAA  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTAGGGATGCTAAAATACAAACAAAATACATGATTGCTCTACTCAA  800

seq1  CATGTTGGATGTAGGTACATAGTTGATTT-AAAAAAAATCTAGAATGC-T  847
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  CATGTTGGATGTAGGTACATAGTTGATTTAAAAAAAAATCTAGAATGCTT  850

seq1  TTTTTATGTGGTAATATTT--ATTCTGTGAGTTGAAAAATGAATTATTTA  895
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TTTTTATGTGGTAATATTTTATTTCTGTGAGTTGAAAAATGAATTATTTA  900

seq1  TATACATATAAATACACAGGTA-TTTATAAATATAAGTTAAAATCAGT-G  943
      ||||||||| |||||||||||| ||||||||||||||||||||||||| |
seq2  TATACATATTAATACACAGGTATTTTATAAATATAAGTTAAAATCAGTGG  950

seq1  AGACTAAAAACACA-TTTTTCAATTAAGAAATGAAATTTTATCTATCTAT  992
      ||||||||| |||| ||||||||||||| |||||||||||||||||||||
seq2  AGACTAAAATCACATTTTTTCAATTAAG-AATGAAATTTTATCTATCTAT  999

seq1  CTAGTGATTCCAAATACAAAAGACAGAGGATCTGT  1027
      ||||||||||| ||| | ||| ||  | |||||||
seq2  CTAGTGATTCCCAATTCTAAATAC--AAGATCTGT  1032


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