BAC Information

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BAC

Clone NameB6Ng01-180O05
Chromosome1 (Build37)
Map Location 152,631,212 - 152,786,838
singlet/doubletdoublet
Overlap geneEG545370
Upstream genePla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneLOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180O05.bB6Ng01-180O05.g
ACCGA007203GA007204
length575957
definitionB6Ng01-180O05.b B6Ng01-180O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,631,212 - 152,631,786)(152,785,889 - 152,786,838)
sequence
gaattccatagtgttttaaaaaaggattcagagaagaaaagcatgcagac
ttaagaaaaaggttctaaatggttaatgtgctggcttcaataagaatggc
ctcataggaacatatgtttgaatgcttggtcctcagctgatagaactgtt
tgggaaggatcagaaggtatggccttgttggagaacctgtgtcatgggag
caggctttgaggcatccccaatggtagctaacttcctctgtgtctctgtc
tctgtatctctctgtctgcgtctgtctgtctctctgtctctgtctgtctt
tctgtctctgtatctctgtgtctgtctctctgtctgtctgtctctctctc
tctctgcttcctgcttatgatcaagatatgacagcatctactgtgatagc
atgcacaagacctgcacacatttaaaccaaacaaaatcccagcactgaga
agggaaactggacacagaacgtccgtcacacacctatccaagaagctatt
tgtaactgattcttttgggaaaggaagaacccgttttctctaatggagtg
tcactagatgtgtcacccacactcc
gaattctaatggacagtgcaaatcctcagaacctcatggagagctgttca
aatgatccaccaatgtttcattggcagttcaatcaacttttttttttttt
gagtagaaaatagtttccccagaatatgcagggctctttgaccaaatgac
atatttcccgttcatgtcttagctccaaacgacaccatttcaaaaaaaaa
aaaaaaaaaaaaaagagcttgacccacccaatctcagcgtcccgtatgga
cgtattctgttttttaaagaaacaaactttaaaaatccattgtgtacatt
aaagattatactcatattgtgttctttttttcttgatgaaaccttatttc
atgagctaagataccagaattttctgtcttgctctttattgattcacgat
catcctttattttttcataccacctcatgatgaggatgctgtgcgaccac
ccatagatcaccagaaagtcatcacccacgtattattttgcaacagtttt
ataattttttgcttaatttctagctgatacattctatgagaatttatctg
atttcttaattctggtcatttcttattattgccttagcaaattgccacaa
atttagtggtctagaaaaccattagcttattgcctatttgttttgaaagt
atcagcctgtgcaggtagagtagcgaccctctttctggaactgctctctt
tctggagctgcaggatccacctctttcctttccccgctgtctgtcatcca
ttccagcctgcattccttgccagccagtccctcctcacattgtccccaac
atgtgcttttgtgtctgtgtctctctccccactttttttttttttctttt
tgtaaaatcttttgtgattcattgaccgtttaaggcaattcttcccatct
cagaatatgtcttagttcttgggatttgggatgtggattgtatttggggg
gtgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152631212_152631786
seq2: B6Ng01-180O05.b_49_623

seq1  GAATTCCATAGTGTTTTAAAAAAGGATTCAGAGAAGAAAAGCATGCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTGTTTTAAAAAAGGATTCAGAGAAGAAAAGCATGCAGAC  50

seq1  TTAAGAAAAAGGTTCTAAATGGTTAATGTGCTGGCTTCAATAAGAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAAGGTTCTAAATGGTTAATGTGCTGGCTTCAATAAGAATGGC  100

seq1  CTCATAGGAACATATGTTTGAATGCTTGGTCCTCAGCTGATAGAACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGAACATATGTTTGAATGCTTGGTCCTCAGCTGATAGAACTGTT  150

seq1  TGGGAAGGATCAGAAGGTATGGCCTTGTTGGAGAACCTGTGTCATGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGATCAGAAGGTATGGCCTTGTTGGAGAACCTGTGTCATGGGAG  200

seq1  CAGGCTTTGAGGCATCCCCAATGGTAGCTAACTTCCTCTGTGTCTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTGAGGCATCCCCAATGGTAGCTAACTTCCTCTGTGTCTCTGTC  250

seq1  TCTGTATCTCTCTGTCTGCGTCTGTCTGTCTCTCTGTCTCTGTCTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTCTCTGTCTGCGTCTGTCTGTCTCTCTGTCTCTGTCTGTCTT  300

seq1  TCTGTCTCTGTATCTCTGTGTCTGTCTCTCTGTCTGTCTGTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTATCTCTGTGTCTGTCTCTCTGTCTGTCTGTCTCTCTCTC  350

seq1  TCTCTGCTTCCTGCTTATGATCAAGATATGACAGCATCTACTGTGATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCTGCTTATGATCAAGATATGACAGCATCTACTGTGATAGC  400

seq1  ATGCACAAGACCTGCACACATTTAAACCAAACAAAATCCCAGCACTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAGACCTGCACACATTTAAACCAAACAAAATCCCAGCACTGAGA  450

seq1  AGGGAAACTGGACACAGAACGTCCGTCACACACCTATCCAAGAAGCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTGGACACAGAACGTCCGTCACACACCTATCCAAGAAGCTATT  500

seq1  TGTAACTGATTCTTTTGGGAAAGGAAGAACCCGTTTTCTCTAATGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGATTCTTTTGGGAAAGGAAGAACCCGTTTTCTCTAATGGAGTG  550

seq1  TCACTAGATGTGTCACCCACACTCC  575
      |||||||||||||||||||||||||
seq2  TCACTAGATGTGTCACCCACACTCC  575

seq1: chr1_152785889_152786838
seq2: B6Ng01-180O05.g_66_1022 (reverse)

seq1  AACTCACCCCCCAAATAC-ATCCACAT-CCAAAT-CCAAGAACCTAAGAC  47
      || ||||||||||||||| |||||||| |||||| ||||||| |||||||
seq2  AATTCACCCCCCAAATACAATCCACATCCCAAATCCCAAGAA-CTAAGAC  49

seq1  ATATTCTGAGATGGGAAGAATTGCC-TAAACGGTCAATGAATCACAAAAG  96
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATTCTGAGATGGGAAGAATTGCCTTAAACGGTCAATGAATCACAAAAG  99

seq1  ATTTTACAAA---AGAAAAAAAAAAAGT-GGGAGAGAGACACAGACACAA  142
      ||||||||||   | ||||||||||||| |||||||||||||||||||||
seq2  ATTTTACAAAAAGAAAAAAAAAAAAAGTGGGGAGAGAGACACAGACACAA  149

seq1  AAGCACATGTTGGGGACAATGTGAGGAAGGACTGGCTGGCAAGGAATGCA  192
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGCACATGTTGGGGACAATGTGAGGAGGGACTGGCTGGCAAGGAATGCA  199

seq1  GGCTGGAATGGATGACAGACAGCGGGGAAAGGAAAGAGGTGGATCCTGCA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAATGGATGACAGACAGCGGGGAAAGGAAAGAGGTGGATCCTGCA  249

seq1  GCTCCAGAAAGAGAGCAGTTCCAGAAAGAGGGTCGCTACTCTACCTGCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAAGAGAGCAGTTCCAGAAAGAGGGTCGCTACTCTACCTGCAC  299

seq1  AGGCTGATACTTTCAAAACAAATAGGCAATAAGCTAATGGTTTTCTAGAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATACTTTCAAAACAAATAGGCAATAAGCTAATGGTTTTCTAGAC  349

seq1  CACTAAATTTGTGGCAATTTGCTAAGGCAATAATAAGAAATGACCAGAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATTTGTGGCAATTTGCTAAGGCAATAATAAGAAATGACCAGAAT  399

seq1  TAAGAAATCAGATAAATTCTCATAGAATGTATCAGCTAGAAATTAAGCAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATCAGATAAATTCTCATAGAATGTATCAGCTAGAAATTAAGCAA  449

seq1  AAAATTATAAAACTGTTGCAAAATAATACGTGGGTGATGACTTTCTGGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAAAACTGTTGCAAAATAATACGTGGGTGATGACTTTCTGGTG  499

seq1  ATCTATGGGTGGTCGCACAGCATCCTCATCATGAGGTGGTATGAAAAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGGTGGTCGCACAGCATCCTCATCATGAGGTGGTATGAAAAAAT  549

seq1  AAAGGATGATCGTGAATCAATAAAGAGCAAGACAGAAAATTCTGGTATCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGATCGTGAATCAATAAAGAGCAAGACAGAAAATTCTGGTATCT  599

seq1  TAGCTCATGAAATAAGGTTTCATCAAGAAAAAAAGAACACAATATGAGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATGAAATAAGGTTTCATCAAGAAAAAAAGAACACAATATGAGTA  649

seq1  TAATCTTTAATGTACACAATGGATTTTTAAAGTTTGTTTCTTTAAAAAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTAATGTACACAATGGATTTTTAAAGTTTGTTTCTTTAAAAAAC  699

seq1  AGAATACGTCCATACGGGACGCTGAGATTGGGTGGGTCAAGCTCTTTTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACGTCCATACGGGACGCTGAGATTGGGTGGGTCAAGCTCTTTTTT  749

seq1  TTTTTTTTTTTTTTTTTGAAATGGTGTCGTTTGGAGCTAAGACATGAACG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGAAATGGTGTCGTTTGGAGCTAAGACATGAACG  799

seq1  GGAAATATGTCATTTGGTCAAAGAGCCCTGCATATTCTGGGGAAACTATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGTCATTTGGTCAAAGAGCCCTGCATATTCTGGGGAAACTATT  849

seq1  TTCTACTCAAAAAAAAAAAAAGTTGATTGAACTGCCAATGAAACATTGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCAAAAAAAAAAAAAGTTGATTGAACTGCCAATGAAACATTGGT  899

seq1  GGATCATTTGAACAGCTCTCCATGAGGTTCTGAGGATTTGCACTGTCCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTGAACAGCTCTCCATGAGGTTCTGAGGATTTGCACTGTCCAT  949

seq1  TAGAATTC  950
      ||||||||
seq2  TAGAATTC  957