BAC Information

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BAC

Clone NameB6Ng01-181E12
Chromosome1 (Build37)
Map Location 69,971,271 - 70,132,217
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E12.bB6Ng01-181E12.g
ACCGA007484GA007485
length1,2011,084
definitionB6Ng01-181E12.b B6Ng01-181E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,971,271 - 69,972,469)(70,131,130 - 70,132,217)
sequence
gaattccattttttatatgtctttgtcatgccatatgtgtggtgggactt
ttgagttttaccaacaaattcatgagtgtaatgatcccaggacattatgt
gggatcatttcttctctgagttctgattttaagtacccaacagtccactt
gaaagctgaccaagtgttgatactgatttcctgacatagttgtctttctt
tactttttcccatttgttaataaaagtgccaccctttctgttccttaggc
taaactgctcggcagttatccttgagattgcaagttatctctgtctgtct
gtcctcacatttgatatgaaaagaaattattttgttatatttttggaaat
tatttttcacctttttataacaccagcactgtttgccttcctgcctcctc
cctcatctccagcctcacacttccgtgtgagtgtgtcctttttctgtaac
taagattattgtagaaacctcctaactagtctttgcttttgtctttatag
tcctgtgaatgcagtagctaagccatcattttaaaaggcatcaaccctga
acattcctttgctgaagtcttttcagtggtctccttgcttattcttagtc
acagggaatcccagacatgatgacttcaaaggctctgtgtattcccaccc
tttcccttcctcctcttttctcttgctacatattgcacccacagtctagc
cttccatgaccttctatggcactgtcttgtggcattggcatttggagctc
ccactgtttgggttgttccatcactcctggcccaggctaaattgcaatgc
tcttgcttatccctccacatgacttgtgcctctttccttctctacgtttc
ccttaagtgccctcacatgtttctacatgagacattgtgctgatcaattt
gctcatcatgatttttgtcactgaaatatcagcccatgagagcaggattg
tggaactttttatccactgctgtgatgtttccagtcttatatctagaaaa
tatatgtcacagggtttaaataaaatgtgttcttagaaagtatataaaaa
catttgcatggatatctgaaatcattgcctgtttaatctcttctttcata
taagaatagtagctgtggtggatttctctcggtagtactattaattcacc
atgaatgatgaccgatgatcccctcatcttaaaacttgaagccattggtt
t
gaattcacaggtcagggcaaatccttatgaatatgaaaagggaacaggac
tttcagcaaactgaagcaagcatggtgaattaaggcatagagtccatggt
gaagagcagaaaggaatggcccctcttctactaaacacaatagcacggag
aaaccatgcaaccacaaaacacacgctagtttattgaatcctctcccaaa
tcagtggcagatatagtcagacccttctgaagaaggcaagcatcttacag
tttacgttggaatgtgtatgtgaatagctgagaatgggagacacccaaaa
agttgtgaacccctgctttaattcaccaaacattgcactaatcaaactaa
ttggctacagggtaaaagttcatgagtccttagtacaaggaaagctttga
aacccaaaacaactgacgggcttaggagcatgactgaaactttctggaca
tctagcacttgcttctgaatcaaaatgctccagaatgctccatggtttca
ggaaaccaaggccctcccttggctaagtgtgaatgaagaactaagggata
gcaacactaagcttcaaccaatcaaaactaaggttttagaaatgtgctgt
gaaacgtgcaaccatttgtgtccagggttcatttctcttctgtgcatcgg
atggtttcattattgctggagccttcctcactaactccacgtctgcagga
tcactctacacactggatcaggggctaacacattatctgtgctatggaag
aactcctaggaattgtccagtttactttacaccccccccccccccccgat
tagatattatatgtggtttcctcctgcttcccagactctgagatgtaact
ccattcctccatgttccaaataccaaatccctgttggtttaagttgccca
gataatgctatataatgtaccttaattgaagcccttttgaactattattt
agtgtacaagagtgtaaaaacaaaagacatgccatccactgagggacttg
ggaaatcctactctactgagctgcactaagattcaggtgaaggctctggc
tagctagccgctagggacatgcagcatgactctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69971271_69972469
seq2: B6Ng01-181E12.b_45_1245

seq1  GAATTCCATTTTTTATATGTCTTTGTCATGCCATATGTGTGGTGGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTTTATATGTCTTTGTCATGCCATATGTGTGGTGGGACTT  50

seq1  TTGAGTTTTACCAACAAATTCATGAGTGTAATGATCCCAGGACATTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTACCAACAAATTCATGAGTGTAATGATCCCAGGACATTATGT  100

seq1  GGGATCATTTCTTCTCTGAGTTCTGATTTTAAGTACCCAACAGTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATTTCTTCTCTGAGTTCTGATTTTAAGTACCCAACAGTCCACTT  150

seq1  GAAAGCTGACCAAGTGTTGATACTGATTTCCTGACATAGTTGTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGACCAAGTGTTGATACTGATTTCCTGACATAGTTGTCTTTCTT  200

seq1  TACTTTTTCCCATTTGTTAATAAAAGTGCCACCCTTTCTGTTCCTTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCCATTTGTTAATAAAAGTGCCACCCTTTCTGTTCCTTAGGC  250

seq1  TAAACTGCTCGGCAGTTATCCTTGAGATTGCAAGTTATCTCTGTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTCGGCAGTTATCCTTGAGATTGCAAGTTATCTCTGTCTGTCT  300

seq1  GTCCTCACATTTGATATGAAAAGAAATTATTTTGTTATATTTTTGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACATTTGATATGAAAAGAAATTATTTTGTTATATTTTTGGAAAT  350

seq1  TATTTTTCACCTTTTTATAACACCAGCACTGTTTGCCTTCCTGCCTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACCTTTTTATAACACCAGCACTGTTTGCCTTCCTGCCTCCTC  400

seq1  CCTCATCTCCAGCCTCACACTTCCGTGTGAGTGTGTCCTTTTTCTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCCAGCCTCACACTTCCGTGTGAGTGTGTCCTTTTTCTGTAAC  450

seq1  TAAGATTATTGTAGAAACCTCCTAACTAGTCTTTGCTTTTGTCTTTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTATTGTAGAAACCTCCTAACTAGTCTTTGCTTTTGTCTTTATAG  500

seq1  TCCTGTGAATGCAGTAGCTAAGCCATCATTTTAAAAGGCATCAACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAATGCAGTAGCTAAGCCATCATTTTAAAAGGCATCAACCCTGA  550

seq1  ACATTCCTTTGCTGAAGTCTTTTCAGTGGTCTCCTTGCTTATTCTTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTTGCTGAAGTCTTTTCAGTGGTCTCCTTGCTTATTCTTAGTC  600

seq1  ACAGGGAATCCCAGACATGATGACTTCAAAGGCTCTGTGTATTCCCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATCCCAGACATGATGACTTCAAAGGCTCTGTGTATTCCCACCC  650

seq1  TTTCCCTTCCTCCTCTTTTCTCTTGCTACATATTGCACCCACAGTCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCTCCTCTTTTCTCTTGCTACATATTGCACCCACAGTCTAGC  700

seq1  CTTCCATGACCTTCTATGGCACTGTCTTGTGGCATTGGCATTTGGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGACCTTCTATGGCACTGTCTTGTGGCATTGGCATTTGGAGCTC  750

seq1  CCACTGTTTGGGTTGTTCCATCACTCCTGGCCCAGGCTAAATTGCAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTGGGTTGTTCCATCACTCCTGGCCCAGGCTAAATTGCAATGC  800

seq1  TCTTGCTTATCCCTCCACATGACTTGTGCCTCTTTCCTTCTCTACGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTATCCCTCCACATGACTTGTGCCTCTTTCCTTCTCTACGTTTC  850

seq1  CCTTAAGTGCCCTCACATGTTTCTACATGAGACATTGTGCTGATCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTGCCCTCACATGTTTCTACATGAGACATTGTGCTGATCAATTT  900

seq1  GCTCATCATGATTTTTGTCACTGAAATATCAGCCCATGAGAGCAGGATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCATGATTTTTGTCACTGAAATATCAGCCCATGAGAGCAGGATTG  950

seq1  TGGAACTTTTTATCCACTGCTGTGATGTTTCCAGTCTTATATCTAGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTTTATCCACTGCTGTGATGTTTCCAGTCTTATATCTAGAAAA  1000

seq1  TATATGTCACA-GGTTTAAATAAAAATGTGTTCTTAGAAAGTAATAT-AA  1048
      ||||||||||| ||||||||| |||||||||||||||||||| |||| ||
seq2  TATATGTCACAGGGTTTAAAT-AAAATGTGTTCTTAGAAAGT-ATATAAA  1048

seq1  AACATTTGCATGGATTAATCTGAAATCATTGCCTTGTTAATCTCTTCTTT  1098
      |||||||||||||||  |||||||||||||||||  ||||||||||||||
seq2  AACATTTGCATGGAT--ATCTGAAATCATTGCCTGTTTAATCTCTTCTTT  1096

seq1  CATATA--GATAGTAGCTGTGGTGGGATTTCTCTCGTTAGTA--ATTATA  1144
      ||||||   |||||||||||||| |||||||||||| |||||  ||||  
seq2  CATATAAGAATAGTAGCTGTGGT-GGATTTCTCTCGGTAGTACTATTAAT  1145

seq1  TCACCCATGAATGATGA-CGATGATTCCCCTCATC-TAAAAC-TGAAGCC  1191
      ||| ||||||||||||| |||||| |||||||||| |||||| |||||||
seq2  TCA-CCATGAATGATGACCGATGA-TCCCCTCATCTTAAAACTTGAAGCC  1193

seq1  TTTGGTTT  1199
       |||||||
seq2  ATTGGTTT  1201

seq1: chr1_70131130_70132217
seq2: B6Ng01-181E12.g_65_1148 (reverse)

seq1  CAGAGCCATGCTTGCCATGTCCCCTAAGCGCTAGCTAGCCAGAGCCCCTT  50
      ||||| ||||||   ||||| |||||   |||||||||||||||  ||||
seq2  CAGAGTCATGCT--GCATGT-CCCTAGCGGCTAGCTAGCCAGAG--CCTT  45

seq1  CACCTGAATCTTAGTGCAGGCCTCAGTAGAGTAGGATTTCCAAAGTCCCT  100
      |||||||||||||||||||  |||||||||||||||||||| ||||||||
seq2  CACCTGAATCTTAGTGCAG--CTCAGTAGAGTAGGATTTCCCAAGTCCCT  93

seq1  CAGTGGATGGCATGTCTTTTGTTTTTACACTCTTGTACACTAAATAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGGCATGTCTTTTGTTTTTACACTCTTGTACACTAAATAATAG  143

seq1  TTCAAAA-GGCTTCAATTAAGGTACATTATATAGCATTATCTGGGCAACT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGGGCTTCAATTAAGGTACATTATATAGCATTATCTGGGCAACT  193

seq1  TAAACCAACAGGGATTTGGTATTTGGAACATGGAGGAATGGAGTTACATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAACAGGGATTTGGTATTTGGAACATGGAGGAATGGAGTTACATC  243

seq1  TCAGAGTCTGGGAAGCAGGAGGAAACCACATATAATATCTAATC--GGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TCAGAGTCTGGGAAGCAGGAGGAAACCACATATAATATCTAATCGGGGGG  293

seq1  GGGGGGGGGGTGTAAAGTAAACTGGACAATTCCTAGGAGTTCTTCCATAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGTGTAAAGTAAACTGGACAATTCCTAGGAGTTCTTCCATAG  343

seq1  CACAGATAATGTGTTAGCCCCTGATCCAGTGTGTAGAGTGATCCTGCAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAATGTGTTAGCCCCTGATCCAGTGTGTAGAGTGATCCTGCAGA  393

seq1  CGTGGAGTTAGTGAGGAAGGCTCCAGCAATAATGAAACCATCCGATGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGTTAGTGAGGAAGGCTCCAGCAATAATGAAACCATCCGATGCAC  443

seq1  AGAAGAGAAATGAACCCTGGACACAAATGGTTGCACGTTTCACAGCACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAATGAACCCTGGACACAAATGGTTGCACGTTTCACAGCACAT  493

seq1  TTCTAAAACCTTAGTTTTGATTGGTTGAAGCTTAGTGTTGCTATCCCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACCTTAGTTTTGATTGGTTGAAGCTTAGTGTTGCTATCCCTTA  543

seq1  GTTCTTCATTCACACTTAGCCAAGGGAGGGCCTTGGTTTCCTGAAACCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCATTCACACTTAGCCAAGGGAGGGCCTTGGTTTCCTGAAACCAT  593

seq1  GGAGCATTCTGGAGCATTTTGATTCAGAAGCAAGTGCTAGATGTCCAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTCTGGAGCATTTTGATTCAGAAGCAAGTGCTAGATGTCCAGAA  643

seq1  AGTTTCAGTCATGCTCCTAAGCCCGTCAGTTGTTTTGGGTTTCAAAGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTCATGCTCCTAAGCCCGTCAGTTGTTTTGGGTTTCAAAGCTT  693

seq1  TCCTTGTACTAAGGACTCATGAACTTTTACCCTGTAGCCAATTAGTTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTAAGGACTCATGAACTTTTACCCTGTAGCCAATTAGTTTGA  743

seq1  TTAGTGCAATGTTTGGTGAATTAAAGCAGGGGTTCACAACTTTTTGGGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCAATGTTTGGTGAATTAAAGCAGGGGTTCACAACTTTTTGGGTG  793

seq1  TCTCCCATTCTCAGCTATTCACATACACATTCCAACGTAAACTGTAAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATTCTCAGCTATTCACATACACATTCCAACGTAAACTGTAAGAT  843

seq1  GCTTGCCTTCTTCAGAAGGGTCTGACTATATCTGCCACTGATTTGGGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTTCTTCAGAAGGGTCTGACTATATCTGCCACTGATTTGGGAGA  893

seq1  GGATTCAATAAACTAGCGTGTGTTTTGTGGTTGCATGGTTTCTCCGTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAATAAACTAGCGTGTGTTTTGTGGTTGCATGGTTTCTCCGTGCT  943

seq1  ATTGTGTTTAGTAGAAGAGGGGCCATTCCTTTCTGCTCTTCACCATGGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTAGTAGAAGAGGGGCCATTCCTTTCTGCTCTTCACCATGGAC  993

seq1  TCTATGCCTTAATTCACCATGCTTGCTTCAGTTTGCTGAAAGTCCTGTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCTTAATTCACCATGCTTGCTTCAGTTTGCTGAAAGTCCTGTTC  1043

seq1  CCTTTTCATATTCATAAGGATTTGCCCTGACCTGTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATATTCATAAGGATTTGCCCTGACCTGTGAATTC  1084