BAC Information

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BAC

Clone NameB6Ng01-181G14
Chromosome1 (Build37)
Map Location 36,722,850 - 36,880,828
singlet/doubletdoublet
Overlap geneBC050210, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, EG623414
Downstream geneEG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181G14.bB6Ng01-181G14.g
ACCGA007580GA007581
length1,1221,111
definitionB6Ng01-181G14.b B6Ng01-181G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,722,850 - 36,723,982)(36,879,739 - 36,880,828)
sequence
gaattcttggctcctctagcaccatgtctgcctgcatgcggccatgcttc
ctgccatgatgataatgaactaaacctctgaactgtgagccaattaaatg
tttgcctttatgagtagctggggccacggtgtctcttcacagcaataaaa
ccctaagaagtggtggctggggcctacaaacatggctcagtgggcaaagt
gcttgctgaacaagcatgagaggcagaactcagatccttagtgtgtattt
aaagatccagctgtggtggtgcacatctgggtacttggggccagccagtc
taaacaaaacaatcagcttctggatcagtgaagagacctggtctcaaaaa
ataaggcaagactgtgaggtggctcagtgtcaagtgctggctgcaggcac
aggaagaatacagagcagggctggagagacggttaagagcactgactgct
cttccagaggtattgagttcaattcccagcaaccacatggtggctcacaa
ccatctgtaatgggatctcatgtcctcttctgttgtgtctgaaacagcta
cagtgtactcatgtacataagataaacaaatattaaaaaaaaaaaaagcc
gggcagtggtggcacatgcctttaatcccagcacttgggaggcagagcca
ggctgatttctgagttcgaggccagcctagtctacagagtaagttccagg
acagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaaaa
aaaaaaaggcatagaaccctttaaatgttgagggggtgtggttacccact
ggtaattacagtgtttagaggatggagacaagggatccttgacattttct
aacaccccccaccacccaccaccacacaccagacaacaaatgtggagaga
gtgaggaagatctactgatgtcaattctagtcctcccttatgccacctgt
acaggtaagcatacatgtaaaccacatggtatacttacactaggcaaaca
gaataaaataaccaccctatataaatttttattagcatcaactgtacttt
tgatctatagcacctacgaaacatcagcccatgactccatgctccaggag
aaggggcctggcttagttgaaa
gaattcatacttaacattcatatagaagtaagtgcctttcagaattgaga
cagttttggttttttggtttttttttttttttttaatggatgaaaataaa
aattaaacagggcaggaaacatggttcagcagttaggagcactggctgtt
cttcttgaagacccaggttcaattcccagcacctacaaggtggctcataa
ctatttgtagttccagttcagaggatctagtgcccccttccggtttctgc
aggcaccaggcatgagcgtggtaggtattcaggcaaaatagccacacaca
tacaattaaaaaaataaaagtttttaaaacaaaacacaaatataccccca
tacacggcattcatggctcacttgtgatactaattaggaataagctgaaa
ttctaactacagaatgttcaacttgtctttaaaacttgagttgaaatcta
tttctaccaaaacaatattgaatttcatagctgtagaaatcctggatttt
tatagatgttgttttaggaatacaactttcctttttaatctgtagaggac
ttgtattttgaaaagctgtctttattcctcccctgtgacttggtcttaac
tggttttagcaggtaaatgagtagtcactggaaatggattgttttcattt
tatagaaaaccttgggcagattaaaaagtttccagggtggttttaatact
ggttttgcgttattgtcagtatacaacacaaaataagctttgtttttaat
tcctaaaacagtgaagtcattgtcagtagcaaacatcccagacttctgac
gtgatggtgggtctgcctcttttccttccatagatcctgaccatccctgt
gaaagctgtggatcgccgtggggctcgctgacctgcttccccaagcacat
gggtctttccccccttcctcccagtaggccagctcacgcttcgctttgat
cgttgtttttctggttgcttagtgcttcaaatggggaaagacatttccct
gttttcatcctctacttgtaactgaaggcaccgcactgtgcgcagggttc
tagaagaatggaaagtgggggatgatcaatagaaaccctcctctgggaag
aattttcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36722850_36723982
seq2: B6Ng01-181G14.b_44_1165

seq1  GAATTCTTGGCTCCTCTAGCACCATGTCTGCCTGCATGCGGCCATGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCTCCTCTAGCACCATGTCTGCCTGCATGCGGCCATGCTTC  50

seq1  CTGCCATGATGATAATGAACTAAACCTCTGAACTGTGAGCCAATTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGATGATAATGAACTAAACCTCTGAACTGTGAGCCAATTAAATG  100

seq1  TTTGCCTTTATGAGTAGCTGGGGCCACGGTGTCTCTTCACAGCAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTATGAGTAGCTGGGGCCACGGTGTCTCTTCACAGCAATAAAA  150

seq1  CCCTAAGAAGTGGTGGCTGGGGCCTACAAACATGGCTCAGTGGGCAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGAAGTGGTGGCTGGGGCCTACAAACATGGCTCAGTGGGCAAAGT  200

seq1  GCTTGCTGAACAAGCATGAGAGGCAGAACTCAGATCCTTAGTGTGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGAACAAGCATGAGAGGCAGAACTCAGATCCTTAGTGTGTATTT  250

seq1  AAAGATCCAGCTGTGGTGGTGCACATCTGGGTACTTGGGGCCAGCCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCAGCTGTGGTGGTGCACATCTGGGTACTTGGGGCCAGCCAGTC  300

seq1  TAAACAAAACAATCAGCTTCTGGATCAGTGAAGAGACCTGGTCTCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAACAATCAGCTTCTGGATCAGTGAAGAGACCTGGTCTCAAAAA  350

seq1  ATAAGGCAAGACTGTGAGGTGGCTCAGTGTCAAGTGCTGGCTGCAGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAAGACTGTGAGGTGGCTCAGTGTCAAGTGCTGGCTGCAGGCAC  400

seq1  AGGAAGAATACAGAGCAGGGCTGGAGAGACGGTTAAGAGCACTGACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATACAGAGCAGGGCTGGAGAGACGGTTAAGAGCACTGACTGCT  450

seq1  CTTCCAGAGGTATTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGTATTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA  500

seq1  CCATCTGTAATGGGATCTCATGTCCTCTTCTGTTGTGTCTGAAACAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAATGGGATCTCATGTCCTCTTCTGTTGTGTCTGAAACAGCTA  550

seq1  CAGTGTACTCATGTACATAAGATAAACAAATATTAAAAAAAAAAAAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTCATGTACATAAGATAAACAAATATTAAAAAAAAAAAAAGCC  600

seq1  GGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGCCA  650

seq1  GGCTGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTAAGTTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTAAGTTCCAGG  700

seq1  ACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAA  750

seq1  AAAAAAAGGCATAGAACCCTTTAAATGTTGAGGGGGTGTGGTTACCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGCATAGAACCCTTTAAATGTTGAGGGGGTGTGGTTACCCACT  800

seq1  GGTAATTACAGTGTTTAGAGGATGGAGACAAGGGATCCTTGACATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTACAGTGTTTAGAGGATGGAGACAAGGGATCCTTGACATTTTCT  850

seq1  AAACACACACACACACACACACACACACACACACAAGACAAAACAAAATG  900
       ||||| | | ||| ||| ||| ||| ||||||| ||||||    |||||
seq2  -AACAC-CCCCCAC-CACCCAC-CAC-CACACACCAGACAA---CAAATG  892

seq1  TGGAGAAGAGTGAGGAAGATCTACTGATGTCAAATTCTAGTC--TCCTTA  948
      ||||| ||||||||||||||||||||||||| ||||||||||   |||||
seq2  TGGAG-AGAGTGAGGAAGATCTACTGATGTC-AATTCTAGTCCTCCCTTA  940

seq1  TG-CACCTGTACAGGTAAGCATACATGTAAA-CACA-GGTATACCTACAC  995
      || |||||||||||||||||||||||||||| |||| ||||||| |||||
seq2  TGCCACCTGTACAGGTAAGCATACATGTAAACCACATGGTATACTTACAC  990

seq1  -AAGCAAACAAAATAAAATACACA-CCTATAATAAATTTTTTATTAGCAT  1043
       | ||||||| |||||||||  || ||||| ||||| |||||||||||||
seq2  TAGGCAAACAGAATAAAATAACCACCCTAT-ATAAA-TTTTTATTAGCAT  1038

seq1  CAACTGTAATTTTTGTATCTAATAGCACCTACAGAACAATCAGCCCATGA  1093
      |||||||| ||||   |||| ||||||||||| |||  ||||||||||||
seq2  CAACTGTACTTTT--GATCT-ATAGCACCTAC-GAAACATCAGCCCATGA  1084

seq1  CTCCATGCTCCAGGGAGAAGTGGGCTGTGCTAAGTTGAAA  1133
      |||||||||||| ||||||| || ||| ||| ||||||||
seq2  CTCCATGCTCCA-GGAGAAGGGGCCTG-GCTTAGTTGAAA  1122

seq1: chr1_36879739_36880828
seq2: B6Ng01-181G14.g_62_1172 (reverse)

seq1  ATAGGAAA--TCTTCCTGAGGGAGGG--TCTATTGCTCAT--CCCACTTT  44
      ||||||||  ||||||    ||||||  ||||||| ||||  ||||||||
seq2  ATAGGAAAATTCTTCCCAGAGGAGGGTTTCTATTGATCATCCCCCACTTT  50

seq1  CCATTCTCTTAAGAACCTG-GCGCAGTGCGGTG-CTTCAGTTAC-AGTAG  91
      |||||||  ||  | |||| || |||||||||| |||||||||| |||||
seq2  CCATTCTTCTAGAACCCTGCGCACAGTGCGGTGCCTTCAGTTACAAGTAG  100

seq1  AGGATGAAAACA-GGAAATGTCTTT-CCCATTTG-AGCACTAAGCAA-CA  137
      |||||||||||| |||||||||||| |||||||| |||||||||||| ||
seq2  AGGATGAAAACAGGGAAATGTCTTTCCCCATTTGAAGCACTAAGCAACCA  150

seq1  G-AAAACAACGATC-AAGCGAAGCGTGAGCTGGCTTACTGGGAAGGAAGG  185
      | |||||||||||| ||||||||||||||||||| ||||||| |||||||
seq2  GAAAAACAACGATCAAAGCGAAGCGTGAGCTGGCCTACTGGG-AGGAAGG  199

seq1  GGG--AAGAACCATGTGCTTGGGGAAGCAGGTCAGCGAG-CCCACGGCGA  232
      |||  |||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GGGGAAAGACCCATGTGCTTGGGGAAGCAGGTCAGCGAGCCCCACGGCGA  249

seq1  T-CACAGCTTTCACAGGGATGGTCAGGATCTATGGA--GGAAAGAGGCAG  279
      | ||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  TCCACAGCTTTCACAGGGATGGTCAGGATCTATGGAAGGAAAAGAGGCAG  299

seq1  A-CCACCATCACGTCAGAAGTCTGGGATGTTTGCTACTGACAATGACTTC  328
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCATCACGTCAGAAGTCTGGGATGTTTGCTACTGACAATGACTTC  349

seq1  ACTGTTTTAGGAATTAAAAACAAAGCTTATTTTGTGTTGTATACTGACAA  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAGGAATTAAAAACAAAGCTTATTTTGTGTTGTATACTGACAA  399

seq1  TAACGCAAAACCAGTATTAAAACCACCCTGGAAACTTTTTAATCTGCCCA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCAAAACCAGTATTAAAACCACCCTGGAAACTTTTTAATCTGCCCA  449

seq1  AGGTTTTCTATAAAATGAAAACAATCCATTTCCAGTGACTACTCATTTAC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCTATAAAATGAAAACAATCCATTTCCAGTGACTACTCATTTAC  499

seq1  CTGCTAAAACCAGTTAAGACCAAGTCACAGGGGAGGAATAAAGACAGCTT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAAACCAGTTAAGACCAAGTCACAGGGGAGGAATAAAGACAGCTT  549

seq1  TTCAAAATACAAGTCCTCTACAGATTAAAAAGGAAAGTTGTATTCCTAAA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATACAAGTCCTCTACAGATTAAAAAGGAAAGTTGTATTCCTAAA  599

seq1  ACAACATCTATAAAAATCCAGGATTTCTACAGCTATGAAATTCAATATTG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCTATAAAAATCCAGGATTTCTACAGCTATGAAATTCAATATTG  649

seq1  TTTTGGTAGAAATAGATTTCAACTCAAGTTTTAAAGACAAGTTGAACATT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGAAATAGATTTCAACTCAAGTTTTAAAGACAAGTTGAACATT  699

seq1  CTGTAGTTAGAATTTCAGCTTATTCCTAATTAGTATCACAAGTGAGCCAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTAGAATTTCAGCTTATTCCTAATTAGTATCACAAGTGAGCCAT  749

seq1  GAATGCCGTGTATGGGGGTATATTTGTGTTTTGTTTTAAAAACTTTTATT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCGTGTATGGGGGTATATTTGTGTTTTGTTTTAAAAACTTTTATT  799

seq1  TTTTTAATTGTATGTGTGTGGCTATTTTGCCTGAATACCTACCACGCTCA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGTATGTGTGTGGCTATTTTGCCTGAATACCTACCACGCTCA  849

seq1  TGCCTGGTGCCTGCAGAAACCGGAAGGGGGCACTAGATCCTCTGAACTGG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGCCTGCAGAAACCGGAAGGGGGCACTAGATCCTCTGAACTGG  899

seq1  AACTACAAATAGTTATGAGCCACCTTGTAGGTGCTGGGAATTGAACCTGG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAATAGTTATGAGCCACCTTGTAGGTGCTGGGAATTGAACCTGG  949

seq1  GTCTTCAAGAAGAACAGCCAGTGCTCCTAACTGCTGAACCATGTTTCCTG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGAAGAACAGCCAGTGCTCCTAACTGCTGAACCATGTTTCCTG  999

seq1  CCCTGTTTAATTTTTATTTTCATCCATTAAAAAAAAAAAAAAAAACCAAA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTAATTTTTATTTTCATCCATTAAAAAAAAAAAAAAAAACCAAA  1049

seq1  AAACCAAAACTGTCTCAATTCTGAAAGGCACTTACTTCTATATGAATGTT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACTGTCTCAATTCTGAAAGGCACTTACTTCTATATGAATGTT  1099

seq1  AAGTATGAATTC  1090
      ||||||||||||
seq2  AAGTATGAATTC  1111