BAC Information

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BAC

Clone NameB6Ng01-181H10
Chromosome1 (Build37)
Map Location 149,053,352 - 149,157,311
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181H10.bB6Ng01-181H10.g
ACCGA007617GA007618
length1,1121,038
definitionB6Ng01-181H10.b B6Ng01-181H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,053,352 - 149,054,105)(149,156,262 - 149,157,311)
sequence
gaattctacacgagtggatcctgggttggcatcaggctatcctcttcgat
tgctggagcgatgaatcatcttaaagaatgggctgggataggtgccctcg
ctgtggcccttgttttgcatgcatgttgtgtgtatggtgtagttttcggt
tgtggaatgcccaggtctgcactgccgccatggtggtgcaagcttttgtt
gcagtagaaacagggcagttacctcaggtttggcttgctgccatgaagaa
caatgaagaccttcgctccatagggttgtaaggctcggcactgcacagag
gttagtctggaagctttttgattatctctgggaggtatgtctgattgcat
gagggttgagtgtcctagtttccttcccccaggaaaaactgcatgggagc
aggtcaggattgctctaggtacctatgagcctaagagccaatcctataca
tggcccctatttctgcacactggggatcagacatctatcttcacccatgg
agcttgcttcaaaagaatataaaatggggaattgtgggaagccattctgg
actccctggccagccccggctgcaccctaagatggtgcctgacagaaatc
tgtgccaggcagtaaacaagcctacatttggtggatgacttgcccttaat
ccctgattggctgagcaagcctgcctggtgtggtgatgtaacctgtggtg
attggttgaggcatggttgtggcttgagtggataaaaacacttgtacctc
gaggctcaggggagttgaagagagaagctgcctgaataaactgcattaag
aagaactggtggttgcgttttcccttgctggttgagggggacgcaacatc
tcaaatttggtgccttactttcaatattcctcttaagtgctaaaactcct
aaatcaatagtaccaagacaaatacatgggggaaagaaataattttgcag
aggaagaaaaggaatgtacaacttacagtatataacccactgaaaggttt
caacccttggtttccttgtctgagtcctacaatgacacatagctgatctt
gatttaggatgcatgatcttacctgagaactgaacgaaatgaatcaagcc
ctgtcaaggtgc

gaattcattgaagaaaaataaaatggtagacctatcttaaattggatagg
gagtgcagatgtcagatgttgtttcacaaatttacctgcagtagtaccat
tttgattattccattctttttatgagactattcaacatacattagctaac
tgactagattataggctcaattttttgtctaaaaatgtatttgcaaatac
aaatttaaaattaagagtccttatataaatttgtaagaagatattctctt
taattttcttgtatttttggtgtattatacatttatgatggtgaaaatgg
catttgaagatttaaaaagtaatgtaacatctaatcacagaaaatgtaaa
atttattattgttatgataacatataatctatagttttccataaaatgac
cttatagaaatttaaactatagtaatattcatttatctttaaattattca
aaataactaaaaatcggagtagaaatcagaccctgcactaaataaagaca
cttaaataaacatggatgatgaagaattttggactcattcattaaaggtc
atgttgctcaatgctggatgaattctttagtatttaactaacaggaaatg
ctttgaccaagacacctgaacacaccctgatttggtgggacagttgagta
cttttagacagtctcatttcttggtgaacaatacaccctgggtttgcatt
tggaacaaacccaggcttggcttgctctctagcactcaaacactagtaac
aaacccaaaacagactccagcaaatctggacttgggtatcatccaaagct
gaaattgtgtaaatgacgagagaagtctgagaatataagcagcctgctta
acacttctggaaagacagcctcaaacaaagccaaattaggaatattgtaa
taaggcataatttttcaatgcccagcagatttatatgccaacaacatcag
aattaatggaatcctcacatatatacagaatatttgtgaaagctcacaga
atttaaaatgaccaccaccatcaccaaatatttcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149053352_149054105
seq2: B6Ng01-181H10.b_396_1156

seq1  AGGGTTGAGTGTCCTAGTTTCCTTCCCCCAGGAAAAACTGCATGGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGAGTGTCCTAGTTTCCTTCCCCCAGGAAAAACTGCATGGGAGCA  50

seq1  GGTCAGGATTGCTCTAGGTACCTATGAGCCTAAGAGCCAATCCTATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGATTGCTCTAGGTACCTATGAGCCTAAGAGCCAATCCTATACAT  100

seq1  GGCCCCTATTTCTGCACACTGGGGATCAGACATCTATCTTCACCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTATTTCTGCACACTGGGGATCAGACATCTATCTTCACCCATGGA  150

seq1  GCTTGCTTCAAAAGAATATAAAATGGGGAATTGTGGGAAGCCATTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTCAAAAGAATATAAAATGGGGAATTGTGGGAAGCCATTCTGGA  200

seq1  CTCCCTGGCCAGCCCCGGCTGCACCCTAAGATGGTGCCTGACAGAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCCAGCCCCGGCTGCACCCTAAGATGGTGCCTGACAGAAATCT  250

seq1  GTGCCAGGCAGTAAACAAGCCTACATTTGGTGGATGACTTGCCCTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGCAGTAAACAAGCCTACATTTGGTGGATGACTTGCCCTTAATC  300

seq1  CCTGATTGGCTGAGCAAGCCTGCCTGGTGTGGTGATGTAACCTGTGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGGCTGAGCAAGCCTGCCTGGTGTGGTGATGTAACCTGTGGTGA  350

seq1  TTGGTTGAGGCATGGTTGTGGCTTGAGTGGATAAAAACACTTGTACCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAGGCATGGTTGTGGCTTGAGTGGATAAAAACACTTGTACCTCG  400

seq1  AGGCTCAGGGGAGTTGAAGAGAGAAGCTGCCTGAATAAACTGCATTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGGGGAGTTGAAGAGAGAAGCTGCCTGAATAAACTGCATTAAGA  450

seq1  AGAACTGGTGGTTGCGTTTT-CCTTGCTGGTTGAGGGGGACGCAACATCT  499
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAACTGGTGGTTGCGTTTTCCCTTGCTGGTTGAGGGGGACGCAACATCT  500

seq1  CAAATTTGGTGCCTTAC-TTCAATATTCCTCTTAAGTGCTAAAACTCCTA  548
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAATTTGGTGCCTTACTTTCAATATTCCTCTTAAGTGCTAAAACTCCTA  550

seq1  AATCAATAGTACCAAGACAAATACAT-GGGGAAAGAAATAATTTTGCAGA  597
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATCAATAGTACCAAGACAAATACATGGGGGAAAGAAATAATTTTGCAGA  600

seq1  GG-AGAAAAGGAATGTACAACTTACAGTAT-TAA-CCACTG-AAGGTTTC  643
      || ||||||||||||||||||||||||||| ||| |||||| ||||||||
seq2  GGAAGAAAAGGAATGTACAACTTACAGTATATAACCCACTGAAAGGTTTC  650

seq1  AACCCTTTGGTTCCTTGTCTGAGTCCTAACAATGACACATAGCTGACCTT  693
      ||||||| | ||||||||||||||||| |||||||||||||||||| |||
seq2  AACCCTTGGTTTCCTTGTCTGAGTCCT-ACAATGACACATAGCTGATCTT  699

seq1  GAATTAGGATGCATGATCTTTACCTGAG-ACAGGACGAAATG-ATCACAG  741
      || ||||||||||||||| ||||||||| || | |||||||| ||||   
seq2  GATTTAGGATGCATGATC-TTACCTGAGAACTGAACGAAATGAATCAAGC  748

seq1  CCTGTCAAGGTGC  754
      |||||||||||||
seq2  CCTGTCAAGGTGC  761


seq1: chr1_149156262_149157311
seq2: B6Ng01-181H10.g_67_1104 (reverse)

seq1  GTGTGAAATATTTTTGTTGATGTTGTTGTTCAATTTTAAATTTTCTGTGA  50
      ||||||||||  |||| ||||| || || || ||||||||  ||||||||
seq2  GTGTGAAATA--TTTGGTGATGGTGGTGGTC-ATTTTAAA--TTCTGTGA  45

seq1  GCTTTCACAAATATCTTGTAATATATGTTGAGGATTCCATTTAATTTCTG  100
      ||||||||||||||  ||| ||||||| |||||||||||||  | |||||
seq2  GCTTTCACAAATATTCTGT-ATATATG-TGAGGATTCCATT--AATTCTG  91

seq1  ATGTTTGTTGGCATAATAAATCTGCTGGGCATTGAAAAATTATGCCTTTA  150
      ||| |||||||||| ||||||||||||||||||||||||||||||| |||
seq2  ATG-TTGTTGGCAT-ATAAATCTGCTGGGCATTGAAAAATTATGCC-TTA  138

seq1  TTACAATATTCCTAATTTGGCTTTGTTTGAGGCTGTCTTTCCAGAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATATTCCTAATTTGGCTTTGTTTGAGGCTGTCTTTCCAGAAGTGT  188

seq1  TAAGCAGGCTGCTTATATTCTCAGACTTCTCTCGTCATTTACACAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGCTGCTTATATTCTCAGACTTCTCTCGTCATTTACACAATTTC  238

seq1  AGCTTTGGATGATACCCAAGTCCAGATTTGCTGGAGTCTGTTTTGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGATGATACCCAAGTCCAGATTTGCTGGAGTCTGTTTTGGGTTT  288

seq1  GTTACTAGTGTTTGAGTGCTAGAGAGCAAGCCAAGCCTGGGTTTGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAGTGTTTGAGTGCTAGAGAGCAAGCCAAGCCTGGGTTTGTTCCA  338

seq1  AATGCAAACCCAGGGTGTATTGTTCACCAAGAAATGAGACTGTCTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAACCCAGGGTGTATTGTTCACCAAGAAATGAGACTGTCTAAAAG  388

seq1  TACTCAACTGTCCCACCAAATCAGGGTGTGTTCAGGTGTCTTGGTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACTGTCCCACCAAATCAGGGTGTGTTCAGGTGTCTTGGTCAAAG  438

seq1  CATTTCCTGTTAGTTAAATACTAAAGAATTCATCCAGCATTGAGCAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGTTAGTTAAATACTAAAGAATTCATCCAGCATTGAGCAACAT  488

seq1  GACCTTTAATGAATGAGTCCAAAATTCTTCATCATCCATGTTTATTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAATGAATGAGTCCAAAATTCTTCATCATCCATGTTTATTTAAG  538

seq1  TGTCTTTATTTAGTGCAGGGTCTGATTTCTACTCCGATTTTTAGTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATTTAGTGCAGGGTCTGATTTCTACTCCGATTTTTAGTTATTT  588

seq1  TGAATAATTTAAAGATAAATGAATATTACTATAGTTTAAATTTCTATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTTAAAGATAAATGAATATTACTATAGTTTAAATTTCTATAAG  638

seq1  GTCATTTTATGGAAAACTATAGATTATATGTTATCATAACAATAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTATGGAAAACTATAGATTATATGTTATCATAACAATAATAAAT  688

seq1  TTTACATTTTCTGTGATTAGATGTTACATTACTTTTTAAATCTTCAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTCTGTGATTAGATGTTACATTACTTTTTAAATCTTCAAATG  738

seq1  CCATTTTCACCATCATAAATGTATAATACACCAAAAATACAAGAAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCACCATCATAAATGTATAATACACCAAAAATACAAGAAAATTA  788

seq1  AAGAGAATATCTTCTTACAAATTTATATAAGGACTCTTAATTTTAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATATCTTCTTACAAATTTATATAAGGACTCTTAATTTTAAATTT  838

seq1  GTATTTGCAAATACATTTTTAGACAAAAAATTGAGCCTATAATCTAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAAATACATTTTTAGACAAAAAATTGAGCCTATAATCTAGTCA  888

seq1  GTTAGCTAATGTATGTTGAATAGTCTCATAAAAAGAATGGAATAATCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTAATGTATGTTGAATAGTCTCATAAAAAGAATGGAATAATCAAA  938

seq1  ATGGTACTACTGCAGGTAAATTTGTGAAACAACATCTGACATCTGCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTACTGCAGGTAAATTTGTGAAACAACATCTGACATCTGCACTC  988

seq1  CCTATCCAATTTAAGATAGGTCTACCATTTTATTTTTCTTCAATGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCAATTTAAGATAGGTCTACCATTTTATTTTTCTTCAATGAATTC  1038


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