BAC Information

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BAC

Clone NameB6Ng01-181J21
Chromosome1 (Build37)
Map Location 113,301,913 - 113,303,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J21.bB6Ng01-181J21.g
ACCGA007731GA007732
length1,1771,134
definitionB6Ng01-181J21.b B6Ng01-181J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatagatgtttgttaggtccacttaattcataaggtatatta
gttttgttatttctgttttgattttgtctcaatgacctcccagctggtga
gagtagagtgttaaagtctcctactattaatgcatggatttagatggaag
attcaagctttagcaatgtttcttattgaaatgtggttttctttctgttt
ggagcatagatgctcagaattgagatataatcttggtagatgtttcctct
gatgtatatgaactttaaatcttccccaaaggaaggaattaaagaagata
caggagatgtaaatatctcccatactcatggagaggtagtattaacatag
ttaaaatgaccatcttaccgaaaacaatccgcagattcagtacaatctcc
atcaaaattctaaaacatttttatagatattgaaatagtaatttgtaaat
tcatacacacaaaacaaaataccaaggatagccaaatgaacctaaaacat
tccttcagaaggaatcattattcctgatcttaagctgtatgacagagcaa
tagtgacaaaaagtaaaaactacatggtattgggacagaaacaaacatac
tgatcaatggaatcaggttaaagtccccaaaataaacccatatacctttg
gacacttgatctttgctaaagatgtaaaaaccatacaatggaaaaaaatg
catattcaccaaatggtgttgttctcactggatgtgtacaggtagaagaa
ttaaaatagatccttatttatcaccacctttctgactagttttatgtgtc
aacttgatacaagctggagttataatagagaaaggagcctccctagaaga
aatgcatccatgagatctagctggaaggcattttctcaatgagtttccaa
gggtgggagggtctattggtggggtggtgccatctctgggctggtagtct
tgagttctataagaaaacaagccgagtaagtcagggaaacagccagtaaa
taccatactctatagactttgcatcagctccagcttctgacatgccttga
gtccagtcgacttctgtagtgatgatagccatgtgagtataggtcaataa
tttctcctaacctggctccttagtgaaataagctcactacagtctcagaa
attcaaatgttcttgcaaggaagcgat
gaattcacagagagtgtaactagtcttcatttagtacatcctgccctcta
gtatcccactaagctatgacacccttaaaaaataagacagatgagatttt
aatgaaaggctcaagtaaccaaatctaaaacatagaaaatcactactaaa
atgcaattatatgaaagtattctaataagaagtcttcaatatttaaaatc
ataaattctgtatttgtaatatagaaaatattttaggaaattactttata
aattttaataattttcatatatgcatatatgatctatatctatagacaga
tatatatctttataatgagtataattctctatttcttaatatcacagatt
aaataataactaaactgttctaattattccaatagttaagatgtagatga
tcccaagaggtattaagaaacaattcactttacttttgaaggcttcaaaa
actaactaaactgtaatgaattcactgagacaggtgataggctattacag
tattttcactcctacttgaagaacttgaggtttactgtctgagcacacat
atgatagtgcatgattggaagacattcttggaaaggcagattgagttttc
cataggactagttaatcatagaatattcttttgggtggggggctgaaatg
aaatgactgatatatgatgattctattctctgttttctagtgaagactat
gctgagatatatgggaacatatgcgaatatttgaatatttttttaaaaaa
tcacacatttatgagaagtcttaaggatagtactattttcatcacacata
ttgttaggtacaactagaaggacctatgagctggctcattgactaaaggg
cccttgttccaagtcttccaaactgagttaggttgtcagagcacacaagt
ttgaagaatagatgccattcttggaagtacacactgacaaccaaacctga
atctccatacaaatatgtatacatagtcacagacatgtaacaaatatatg
tgtataacaacatacactgtaagaaataaaacagttttcaattatttgtt
ttagtcaatgtgagactatagactgtgaaaggaattttttttattgcctt
taactgtaacttatactatagttcccatgagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113301913_113303063
seq2: B6Ng01-181J21.g_63_1196 (reverse)

seq1  TTACTCAATAGAACTTATAGTATAAGTTACAGTGTAAAGGCAATAAAAAA  50
      |||||||   |||| |||||||||||||||||| ||||||||||||||||
seq2  TTACTCATGGGAAC-TATAGTATAAGTTACAGT-TAAAGGCAATAAAAAA  48

seq1  ATATCTTTTCACAGTCTAATAGTCTTCCACA-TGACTAAAAAACAAATAA  99
      |  || ||||||||||| |||||||  |||| |||||  |||||||||||
seq2  AATTCCTTTCACAGTCT-ATAGTCT--CACATTGACT--AAAACAAATAA  93

seq1  TTTGAAAACTTGTTTTATTTCTTACAGTGTTATTGTTTTGTTTATTTACA  149
       |||||||| |||||||||||||||||||       | ||||  | ||||
seq2  -TTGAAAAC-TGTTTTATTTCTTACAGTG-------TATGTTGTTATACA  134

seq1  CATATATTTGTTACATGTCTGTGACTATGTATACATATTTGTATGGAAGA  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATATATTTGTTACATGTCTGTGACTATGTATACATATTTGTATGG-AGA  183

seq1  TTTCAGGTTTGGTTGTCAGTGTGTTACTTCCAAGAATGGCATCTATTCTT  249
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -TTCAGGTTTGGTTGTCAGTGTG-TACTTCCAAGAATGGCATCTATTCTT  231

seq1  CAAACTTGTGTGCTCTGACAACCTAACTCAGTTTGGAAGACTTGGAACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTGTGCTCTGACAACCTAACTCAGTTTGGAAGACTTGGAACAA  281

seq1  GGGCCC-TTAGTCAATGAGCCAGCTCATAGGTCCTTCTAGTTGTACCTAA  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTTAGTCAATGAGCCAGCTCATAGGTCCTTCTAGTTGTACCTAA  331

seq1  CAATATGTGTGATGAAAATAGTACTATCCTTAAGACTTCTCATAAATGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTGTGATGAAAATAGTACTATCCTTAAGACTTCTCATAAATGTG  381

seq1  TGATTTTTTAAAAAAATATTCAAATATTCGCATATGTTCCCATATATCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTAAAAAAATATTCAAATATTCGCATATGTTCCCATATATCTC  431

seq1  AGCATAGTCTTCACTAGAAAACAGAGAATAGAATCATCATATATCAGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTCTTCACTAGAAAACAGAGAATAGAATCATCATATATCAGTCA  481

seq1  TTTCATTTCAGCCCCCCACCCAAAAGAATATTCTATGATTAACTAGTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCAGCCCCCCACCCAAAAGAATATTCTATGATTAACTAGTCCT  531

seq1  ATGGAAAACTCAATCTGCCTTTCCAAGAATGTCTTCCAATCATGCACTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACTCAATCTGCCTTTCCAAGAATGTCTTCCAATCATGCACTAT  581

seq1  CATATGTGTGCTCAGACAGTAAACCTCAAGTTCTTCAAGTAGGAGTGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTGCTCAGACAGTAAACCTCAAGTTCTTCAAGTAGGAGTGAAA  631

seq1  ATACTGTAATAGCCTATCACCTGTCTCAGTGAATTCATTACAGTTTAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTAATAGCCTATCACCTGTCTCAGTGAATTCATTACAGTTTAGTT  681

seq1  AGTTTTTGAAGCCTTCAAAAGTAAAGTGAATTGTTTCTTAATACCTCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAAGCCTTCAAAAGTAAAGTGAATTGTTTCTTAATACCTCTTG  731

seq1  GGATCATCTACATCTTAACTATTGGAATAATTAGAACAGTTTAGTTATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCTACATCTTAACTATTGGAATAATTAGAACAGTTTAGTTATTA  781

seq1  TTTAATCTGTGATATTAAGAAATAGAGAATTATACTCATTATAAAGATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTGTGATATTAAGAAATAGAGAATTATACTCATTATAAAGATAT  831

seq1  ATATCTGTCTATAGATATAGATCATATATGCATATATGAAAATTATTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTCTATAGATATAGATCATATATGCATATATGAAAATTATTAAA  881

seq1  ATTTATAAAGTAATTTCCTAAAATATTTTCTATATTACAAATACAGAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAGTAATTTCCTAAAATATTTTCTATATTACAAATACAGAATT  931

seq1  TATGATTTTAAATATTGAAGACTTCTTATTAGAATACTTTCATATAATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTAAATATTGAAGACTTCTTATTAGAATACTTTCATATAATTG  981

seq1  CATTTTAGTAGTGATTTTCTATGTTTTAGATTTGGTTACTTGAGCCTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTAGTGATTTTCTATGTTTTAGATTTGGTTACTTGAGCCTTTC  1031

seq1  ATTAAAATCTCATCTGTCTTATTTTTTAAGGGTGTCATAGCTTAGTGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCTCATCTGTCTTATTTTTTAAGGGTGTCATAGCTTAGTGGGA  1081

seq1  TACTAGAGGGCAGGATGTACTAAATGAAGACTAGTTACACTCTCTGTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAGGGCAGGATGTACTAAATGAAGACTAGTTACACTCTCTGTGAA  1131

seq1  TTC  1151
      |||
seq2  TTC  1134