BAC Information

Click to search

BAC

Clone NameB6Ng01-181K05
Chromosome1 (Build37)
Map Location 75,535,333 - 75,635,511
singlet/doubletdoublet
Overlap geneSlc4a3, LOC100039069, LOC383531
Upstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181K05.bB6Ng01-181K05.g
ACCGA007747GA007748
length1,1671,129
definitionB6Ng01-181K05.b B6Ng01-181K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,535,333 - 75,536,513)(75,634,397 - 75,635,511)
sequence
gaattcagtcacatggtcacatgtgccagcatgctgtattttggttctgt
gtgccggcatgccatattttgcatccacccacaagggtcagtgtggtgtg
gttgtaacacgggaaggacacgggatttaggactgtgtcttagttgtatg
attcacggcttagctgtgagctagtaacgtccccttgtttgctcacctgc
agtgtggaattgagactaatcaataacttatctgcttcacagaggtgttg
agtatccgtgggagtattgtgcaaaacctcaatgcattcaataaatgctg
gctacagaatccgcctgttagttgctacatgcttctttgtcacccaggag
cctcggactgttctttgtaactggaagaatggctgcctgcttcttattgc
ctatgtgtttatgggtgaatatttccccagtgtgctttggaggaaactcg
cacacttctggaaagagcatgagtcaggacacatttctgtcttggcccat
cccttttgtcacttgatcatttgggacttggtgacttctccggcctccac
tgaaaacattccttagtttattagttactataattacctgtgcacttgct
tcacagagactcactgagctctttgggaggtgcctggctctgtgcgagga
gggatgcaggaagtcacaataggattctctttcagggtctggttatataa
ctctggtcggtcgtgaacttgagatcctcctgtctgggccttctgagtac
tggattttggattaaaaccaacatgaagtgcacggtgtcagtgtgtaagg
acatactttgtgctttgtctgtgcactcagccttcctgtgatgttatcac
gactgtcctggggaagatctacatcttacaggtgtggcgagtgaggctga
gttactaaggtgctctcacccttgaaccctctgtctacaagatctgagct
gtcttccttaaaccatattgcctctaagcctatggaaggcccatcctttc
aggatccatcaagttctttcatacgtctctggtggaacacgtctgggatt
atcatatcctgtcaacagaaacacaatccagatcggtccaactgttaggc
aaacatctttacaattaccaggtccttccaaggcttgaagggtgcttcct
acctctccaaccacacc
gaattctccacccgtgtggaagcagccggtggaaccctcatggagaactc
tctacaaaatctcctcctctgcttcttgggcttctttcctgcagggtaga
tggcaatggagagattgggtggggtcagatttccttggcacttagattat
gaggaaagatcacggtgtttatccaagaataataaatgtcagcattctga
actcttaaaaagacggtgattctaaatgtcaagaagagtgtgcctgccag
ataaactcaaacaaggtaagccaggggcaggatgtaccatgtattctgcg
gtctcctgcactcagggtttctttgctgcattgggaagaaaggcatgtga
acaaaaaaaaaaaaaaaaaaaaaatgttccaagtctttgttacggtcctg
tggttctcctctatcaaacctaggacaccacagcccatgttcctgggtga
gtaagaaaatacataaaatgaagctgtttctttccaaataaacagagccc
tggagaattgtgtaagctgcacacacctgaccaactttcccattctatac
cccaagcaggcatcacaaatcaatcacagcactcattccctttaaaccca
aatgttcctggagaaccatccgcaacatgagactcaaagaagtcattatc
gatcaaggcagaacatcctaaaacatgacatatttagggttctttctgtt
ttccattttttttaattttaaatgcattggtgttctgcctacatgtatgt
gtctgtgtgagggtgttgaatgaatcccctagaactggagttatagacag
ttgtgagttgccatatcagtgctgggaattgaactcagatcctctcgaag
aatagccagtgctctctcctgctgagccgtctcttccgggctcttgtttt
tcaatgttttgatgacatgttctttcaccagatttagtctggaggagagg
gggagggctaccagttaaggcagctttgtgtgttcaggattcagccttcc
catgaaggaagtggtcatcacacttgggcctcatgcacgacttcaattca
ctaagcagatagcttacattttttcaaggcatctgtacgtggttaagtta
ctccttcttcaggctcaaggaataacgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75535333_75536513
seq2: B6Ng01-181K05.b_44_1210

seq1  GAATTCAGTCACATGGTCACATGTGCCAGCATGCTGTATTTTGGTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACATGGTCACATGTGCCAGCATGCTGTATTTTGGTTCTGT  50

seq1  GTGCCGGCATGCCATATTTTGCATCCACCCACAAGGGTCAGTGTGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGGCATGCCATATTTTGCATCCACCCACAAGGGTCAGTGTGGTGTG  100

seq1  GTTGTAACACGGGAAGGACACGGGATTTAGGACTGTGTCTTAGTTGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACACGGGAAGGACACGGGATTTAGGACTGTGTCTTAGTTGTATG  150

seq1  ATTCACGGCTTAGCTGTGAGCTAGTAACGTCCCCTTGTTTGCTCACCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGGCTTAGCTGTGAGCTAGTAACGTCCCCTTGTTTGCTCACCTGC  200

seq1  AGTGTGGAATTGAGACTAATCAATAACTTATCTGCTTCACAGAGGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAATTGAGACTAATCAATAACTTATCTGCTTCACAGAGGTGTTG  250

seq1  AGTATCCGTGGGAGTATTGTGCAAAACCTCAATGCATTCAATAAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCGTGGGAGTATTGTGCAAAACCTCAATGCATTCAATAAATGCTG  300

seq1  GCTACAGAATCCGCCTGTTAGTTGCTACATGCTTCTTTGTCACCCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAATCCGCCTGTTAGTTGCTACATGCTTCTTTGTCACCCAGGAG  350

seq1  CCTCGGACTGTTCTTTGTAACTGGAAGAATGGCTGCCTGCTTCTTATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGACTGTTCTTTGTAACTGGAAGAATGGCTGCCTGCTTCTTATTGC  400

seq1  CTATGTGTTTATGGGTGAATATTTCCCCAGTGTGCTTTGGAGGAAACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTTATGGGTGAATATTTCCCCAGTGTGCTTTGGAGGAAACTCG  450

seq1  CACACTTCTGGAAAGAGCATGAGTCAGGACACATTTCTGTCTTGGCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTGGAAAGAGCATGAGTCAGGACACATTTCTGTCTTGGCCCAT  500

seq1  CCCTTTTGTCACTTGATCATTTGGGACTTGGTGACTTCTCCGGCCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGTCACTTGATCATTTGGGACTTGGTGACTTCTCCGGCCTCCAC  550

seq1  TGAAAACATTCCTTAGTTTATTAGTTACTATAATTACCTGTGCACTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATTCCTTAGTTTATTAGTTACTATAATTACCTGTGCACTTGCT  600

seq1  TCACAGAGACTCACTGAGCTCTTTGGGAGGTGCCTGGCTCTGTGCGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGACTCACTGAGCTCTTTGGGAGGTGCCTGGCTCTGTGCGAGGA  650

seq1  GGGATGCAGGAAGTCACAATAGGATTCTCTTTCAGGGTCTGGTTATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCAGGAAGTCACAATAGGATTCTCTTTCAGGGTCTGGTTATATAA  700

seq1  CTCTGGTCGGTCGTGAACTTGAGATCCTCCTGTCTGGGCCTTCTGAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCGGTCGTGAACTTGAGATCCTCCTGTCTGGGCCTTCTGAGTAC  750

seq1  TGGGATTTTGGATTAAAACCAACATGAAGTGCACGGTGTCAGTGTGTAAG  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGATTTTGGATTAAAACCAACATGAAGTGCACGGTGTCAGTGTGTAAG  799

seq1  GACATACTTTGTGCTTTGTCTGTGCACTCAGCCTTCCTGTGATGTTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACTTTGTGCTTTGTCTGTGCACTCAGCCTTCCTGTGATGTTATCA  849

seq1  CGACTGTCCTGGGGAAGATCTACATCTTACAGGTGTGGCGAGTGAGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTCCTGGGGAAGATCTACATCTTACAGGTGTGGCGAGTGAGGCTG  899

seq1  AGGTTACTAAGGTGCTCTCACCCTTGAACCCTCTGTCTACAAGATCTGAG  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTTACTAAGGTGCTCTCACCCTTGAACCCTCTGTCTACAAGATCTGAG  948

seq1  CTGTCTTCCTTAAACCATATTGCCTCCTAAGCCTTATGGAAGGCCCATCC  1000
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CTGTCTTCCTTAAACCATATTGCCT-CTAAGCC-TATGGAAGGCCCATCC  996

seq1  TTTCAGGATCCATCCAGTCCTTTCATACGGTCTCTGGTGGCACCAACGTC  1050
      |||||||||||||| ||| ||||||||| ||||||||||| ||  |||||
seq2  TTTCAGGATCCATCAAGTTCTTTCATAC-GTCTCTGGTGGAAC--ACGTC  1043

seq1  TGGGATTATCATATCCTGTCAACAG-AACACCATCGAGATC-GTTCAACT  1098
      ||||||||||||||||||||||||| ||||| ||| ||||| || |||||
seq2  TGGGATTATCATATCCTGTCAACAGAAACACAATCCAGATCGGTCCAACT  1093

seq1  GTTTAAGCAAACCATTCTTTCCCATTACAGGGTCCTTCCCAGGGGCTTGA  1148
      | ||| ||||||   ||||| | |||||  ||||||||| |  |||||||
seq2  G-TTAGGCAAAC--ATCTTTACAATTACCAGGTCCTTCCAA--GGCTTGA  1138

seq1  GTGTTGCCCTTTCCCCTACCTCTCCAACC-CACC  1181
        | |||   ||  ||||||||||||||| ||||
seq2  AGGGTGC---TT--CCTACCTCTCCAACCACACC  1167

seq1: chr1_75634397_75635511
seq2: B6Ng01-181K05.g_63_1191 (reverse)

seq1  AACGTTATTCTTTGAGCTTG-AGAGGTTGTACCT--AACACGTACAGATT  47
      |||||||||| |||||| || ||| |  ||| ||  | |||||||||| |
seq2  AACGTTATTCCTTGAGCCTGAAGAAGGAGTAACTTAACCACGTACAGA-T  49

seq1  GCTTTGAAAAAATGT-AGCTATCTGCTTAGTGAATTGAAGTCGTGCATGA  96
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAAAAATGTAAGCTATCTGCTTAGTGAATTGAAGTCGTGCATGA  99

seq1  GGCCCAAGGTTGTGATGACCACTTCCTTCATGGGAA-GCTGGATCCTGA-  144
      ||||||||  |||||||||||||||||||||||||| |||| ||||||| 
seq2  GGCCCAAG--TGTGATGACCACTTCCTTCATGGGAAGGCTGAATCCTGAA  147

seq1  -ACACAAAGCTGCC-TAACT-GTAGCC--TCCCCTCTCCT-CAGACT-AA  187
       ||||||||||||| ||||| ||||||   |||||||||| |||||| ||
seq2  CACACAAAGCTGCCTTAACTGGTAGCCCTCCCCCTCTCCTCCAGACTAAA  197

seq1  TCT-GTG-AAGAACATGTCATCAAAACATTG-AAAACAAGAGCCCGG-AG  233
      ||| ||| ||||||||||||||||||||||| ||||||||||||||| ||
seq2  TCTGGTGAAAGAACATGTCATCAAAACATTGAAAAACAAGAGCCCGGAAG  247

seq1  AGACGGCTCAGCAGGAGAGAGCACTGGCTATTCTTCGAGAGGATCTGAGT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCTCAGCAGGAGAGAGCACTGGCTATTCTTCGAGAGGATCTGAGT  297

seq1  TCAATTCCCAGCACTGATATGGCAACTCACAACTGTCTATAACTCCAGTT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCACTGATATGGCAACTCACAACTGTCTATAACTCCAGTT  347

seq1  CTAGGGGATTCATTCAACACCCTCACACAGACACATACATGTAGGCAGAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGATTCATTCAACACCCTCACACAGACACATACATGTAGGCAGAA  397

seq1  CACCAATGCATTTAAAATTAAAAAAAATGGAAAACAGAAAGAACCCTAAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATGCATTTAAAATTAAAAAAAATGGAAAACAGAAAGAACCCTAAA  447

seq1  TATGTCATGTTTTAGGATGTTCTGCCTTGATCGATAATGACTTCTTTGAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATGTTTTAGGATGTTCTGCCTTGATCGATAATGACTTCTTTGAG  497

seq1  TCTCATGTTGCGGATGGTTCTCCAGGAACATTTGGGTTTAAAGGGAATGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTGCGGATGGTTCTCCAGGAACATTTGGGTTTAAAGGGAATGA  547

seq1  GTGCTGTGATTGATTTGTGATGCCTGCTTGGGGTATAGAATGGGAAAGTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGATTGATTTGTGATGCCTGCTTGGGGTATAGAATGGGAAAGTT  597

seq1  GGTCAGGTGTGTGCAGCTTACACAATTCTCCAGGGCTCTGTTTATTTGGA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGTGTGTGCAGCTTACACAATTCTCCAGGGCTCTGTTTATTTGGA  647

seq1  AAGAAACAGCTTCATTTTATGTATTTTCTTACTCACCCAGGAACATGGGC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGCTTCATTTTATGTATTTTCTTACTCACCCAGGAACATGGGC  697

seq1  TGTGGTGTCCTAGGTTTGATAGAGGAGAACCACAGGACCGTAACAAAGAC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCCTAGGTTTGATAGAGGAGAACCACAGGACCGTAACAAAGAC  747

seq1  TTGGAACATTTTTTTTTTTTTTTTTTTTTTGTTCACATGCCTTTCTTCCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACATTTTTTTTTTTTTTTTTTTTTTGTTCACATGCCTTTCTTCCC  797

seq1  AATGCAGCAAAGAAACCCTGAGTGCAGGAGACCGCAGAATACATGGTACA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCAAAGAAACCCTGAGTGCAGGAGACCGCAGAATACATGGTACA  847

seq1  TCCTGCCCCTGGCTTACCTTGTTTGAGTTTATCTGGCAGGCACACTCTTC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCTGGCTTACCTTGTTTGAGTTTATCTGGCAGGCACACTCTTC  897

seq1  TTGACATTTAGAATCACCGTCTTTTTAAGAGTTCAGAATGCTGACATTTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTAGAATCACCGTCTTTTTAAGAGTTCAGAATGCTGACATTTA  947

seq1  TTATTCTTGGATAAACACCGTGATCTTTCCTCATAATCTAAGTGCCAAGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTGGATAAACACCGTGATCTTTCCTCATAATCTAAGTGCCAAGG  997

seq1  AAATCTGACCCCACCCAATCTCTCCATTGCCATCTACCCTGCAGGAAAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGACCCCACCCAATCTCTCCATTGCCATCTACCCTGCAGGAAAGA  1047

seq1  AGCCCAAGAAGCAGAGGAGGAGATTTTGTAGAGAGTTCTCCATGAGGGTT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGAAGCAGAGGAGGAGATTTTGTAGAGAGTTCTCCATGAGGGTT  1097

seq1  CCACCGGCTGCTTCCACACGGGTGGAGAATTC  1115
      ||||||||||||||||||||||||||||||||
seq2  CCACCGGCTGCTTCCACACGGGTGGAGAATTC  1129