BAC Information

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BAC

Clone NameB6Ng01-181M18
Chromosome1 (Build37)
Map Location 64,138,844 - 64,140,039
singlet/doubletsinglet
Overlap geneKlf7
Upstream geneNdufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918
Downstream genePpia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181M18.bB6Ng01-181M18.g
ACCGA007860GA007861
length1,1391,196
definitionB6Ng01-181M18.b B6Ng01-181M18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgttaacaactgggatcaacaagagctccacctaagattcac
ttaatcttagaagccagggtcaagggcttcgtacccttgccatagttcct
attttagtctattgtatagtccacctttcccttaggccattgtaaataca
tgtgtatgggtgtaactcagctatctatagttctaagtatctattctggt
tcctctttaggtctcaaacttccttcttcctagaagatggtaaattcctg
tgtagggcagtgacttagcttttattcaaagtgatagtgtaataccagag
gcaattctgaatgtcactgaaaagcaacattcttactgaattccaagccc
atggtctgctcaaggactttctaggactgttggaacactggtgaaggctt
agctatgtcagaattcaatcttaaaaggcacttataataggataatacta
aaagagagcacgaggatccatacactagactaacgcgggaatggaatatt
aatgtatgggttagagaggacgccagactccaggaggtgagtttccgtga
aactctttgcctcatgagtagcttccaagcctctcagcctgtcaagctga
ctcgaccagagtgcatggcatgaagtggtgtgtgtatatgctagtaacgt
tttatttcttgattttggtgttggtaactcctcaatgaaaattcttttag
ctgctacttatggtctaaactcttaatatatgtgtgttccagtgaatgat
tatttattgaagagaaggatagttatgtgttgttgattgaaaactgctag
atctctgggcagtggtggcacatgcctttaattccagcacttgggaggca
gaggcaggcagatttctgagttcaaggccagcctgttctacagaatgagt
tccagtaaaccctgtctcgaaaaaccaaacaaccacaacaacataaacaa
agaaactgctagatatatagatcatattatacacataaagtcacttgcag
agcaattaataccacatattctttgaacatatatacgattgcatgggtta
tctctgctcatctgtgacgggaatcagtatgtccattgctctgagagcct
gaaggaccctgagtttgaactctcgttatatgccaggct
gaattcttaaattactttgttgacgtacctcacagaaacatattataatg
gcccaaattacggatttctctatggtatggcaagataggccaatgtgatt
tcctagtgccctacttactggaataaaggcttatggcaagacaccagggt
gactgcatcattaattaacctgaaccacataccggaacatcactgctaat
aaaactcgcctataaagaaaacatgttttctctactgagaatcctggaat
gtgggcccccggcagagccattactttaattaaaggaaattttgatgttt
tgtatgaaatgtcttatcattgcgagtttggttagatttggtttgatctt
caacgacttactactcttccttgcacgtgactcattttcttgaaaagaaa
agacatctgtactctcagcgtttgttaatgtctctatgaatggaagggtc
actatctacagagtttttaaaaatatactgtgagctgaatcccaagattt
gctgattcagaaatctatacaaaccttccatttctctctaaaaacacaaa
accaaaaccaagctgtcagacaaggacaaagccatagcgagaacgcaggt
gagtgtaggactctgcgcattcaatccacacaatgggaatcacttgactt
taaaagagagagagagagagagagagagagaatatattaatgttctgaaa
accatctaaaaatgcttattagcatttttcacaatctcccacctgggagt
ccccttgtgaggtcctataggctgtgaggattaaaattccaatttatagg
ggaatctgacctagtaagaagattggtatttccacaattacacaactaaa
tcaccagtgaaaccagaaatagaatcaaaaggtttctggaaaataacaat
tagggttcaacaattctgccccaccctgggacggctggcgaaggatcctc
agttgaggtcgaaagctttcaagagcagcatcctccctcagcaatgtctg
gagggaaccggcgtcatgttcagatgagggaatgggattcttctgattca
accaatcaacaaccaacaaaacaacagcaaaatactacaaaccaaatgat
gtcatgagaaactgtgacctacacttttttcttctgataacattgggaat
ggaatgggttgaactgttcagaaagtatcccagatgctcctccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64138844_64140039
seq2: B6Ng01-181M18.g_68_1263

seq1  GAATTCTTAAATTACTTTGTTGACGTACCTCACAGAAACATATTATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTACTTTGTTGACGTACCTCACAGAAACATATTATAATG  50

seq1  GCCCAAATTACGGATTTCTCTATGGTATGGCAAGATAGGCCAATGTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATTACGGATTTCTCTATGGTATGGCAAGATAGGCCAATGTGATT  100

seq1  TCCTAGTGCCCTACTTACTGGAATAAAGGCTTATGGCAAGACACCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGCCCTACTTACTGGAATAAAGGCTTATGGCAAGACACCAGGGT  150

seq1  GACTGCATCATTAATTAACCTGAACCACATACCGGAACATCACTGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATCATTAATTAACCTGAACCACATACCGGAACATCACTGCTAAT  200

seq1  AAAACTCGCCTATAAAGAAAACATGTTTTCTCTACTGAGAATCCTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCGCCTATAAAGAAAACATGTTTTCTCTACTGAGAATCCTGGAAT  250

seq1  GTGGGCCCCCGGCAGAGCCATTACTTTAATTAAAGGAAATTTTGATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCCCGGCAGAGCCATTACTTTAATTAAAGGAAATTTTGATGTTT  300

seq1  TGTATGAAATGTCTTATCATTGCGAGTTTGGTTAGATTTGGTTTGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAATGTCTTATCATTGCGAGTTTGGTTAGATTTGGTTTGATCTT  350

seq1  CAACGACTTACTACTCTTCCTTGCACGTGACTCATTTTCTTGAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACTTACTACTCTTCCTTGCACGTGACTCATTTTCTTGAAAAGAAA  400

seq1  AGACATCTGTACTCTCAGCGTTTGTTAATGTCTCTATGAATGGAAGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTGTACTCTCAGCGTTTGTTAATGTCTCTATGAATGGAAGGGTC  450

seq1  ACTATCTACAGAGTTTTTAAAAATATACTGTGAGCTGAATCCCAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTACAGAGTTTTTAAAAATATACTGTGAGCTGAATCCCAAGATTT  500

seq1  GCTGATTCAGAAATCTATACAAACCTTCCATTTCTCTCTAAAAACACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTCAGAAATCTATACAAACCTTCCATTTCTCTCTAAAAACACAAA  550

seq1  ACCAAAACCAAGCTGTCAGACAAGGACAAAGCCATAGCGAGAACGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCAAGCTGTCAGACAAGGACAAAGCCATAGCGAGAACGCAGGT  600

seq1  GAGTGTAGGACTCTGCGCATTCAATCCACACAATGGGAATCACTTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGACTCTGCGCATTCAATCCACACAATGGGAATCACTTGACTT  650

seq1  TAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAATATATTAATGTTCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAATATATTAATGTTCTGAAA  700

seq1  ACCATCTAAAAATGCTTATTAGCATTTTTCACAATCTCCCACCTGGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAAAAATGCTTATTAGCATTTTTCACAATCTCCCACCTGGGAGT  750

seq1  CCCCTTGTGAGGTCCTATAGGCTGTGAGGATTAAAATTCCAATTTATA-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCCTTGTGAGGTCCTATAGGCTGTGAGGATTAAAATTCCAATTTATAGG  800

seq1  GGAATCTGACCTAGTAAGAAGATTGGTATTTCCACAATTACACAACTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGACCTAGTAAGAAGATTGGTATTTCCACAATTACACAACTAAA  850

seq1  TCACCAGTGAAACCAGAAATAGAATCAAAAGGTTTCTGGAAAATAACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTGAAACCAGAAATAGAATCAAAAGGTTTCTGGAAAATAACAAT  900

seq1  TA-GGTTCAACAATTCTGCCCCACCCT-GGACGGCTGGCGAAGGAT-CTC  946
      || |||||||||||||||||||||||| |||||||||||||||||| |||
seq2  TAGGGTTCAACAATTCTGCCCCACCCTGGGACGGCTGGCGAAGGATCCTC  950

seq1  AG-TGAGGTCGAAAGCTT--CAGAGCAGCATCCTCCCTCAGCAATGTCTG  993
      || |||||||||||||||   |||||||||||||||||||||||||||||
seq2  AGTTGAGGTCGAAAGCTTTCAAGAGCAGCATCCTCCCTCAGCAATGTCTG  1000

seq1  --AGGAAC--GCG-CATG-TCAGATGAGGGAATGGGA-TCTTCTGAATCA  1036
         |||||  ||| |||| |||||||||||||||||| |||||||| || 
seq2  GAGGGAACCGGCGTCATGTTCAGATGAGGGAATGGGATTCTTCTGATTC-  1049

seq1  AAACCAAACCAAACCAACCAAACAAAAACAACAGCAAAAAATAACTACAA  1086
       |||||| |   | |||||||   |||||||||||||||    |||||||
seq2  -AACCAATC---AACAACCAA--CAAAACAACAGCAAAA---TACTACAA  1090

seq1  AAACACAAAAATAGATGCCAAATGAGAAACTTGTGA-CTACACTTTTTTT  1135
          || |||   |||| |  ||||||||| ||||| |||||| ||||||
seq2  ----ACCAAA--TGATGTC--ATGAGAAAC-TGTGACCTACAC-TTTTTT  1130

seq1  CTTCTGATAACATTGGG-ATGG-ATGGG-TGACCTTGGTTCAGAAAGTAC  1182
      ||||||||||||||||| |||| ||||| ||| ||  |||||||||||| 
seq2  CTTCTGATAACATTGGGAATGGAATGGGTTGAACT--GTTCAGAAAGTAT  1178

seq1  CCCAG----TCCTCCAGG  1196
      |||||    |||||||||
seq2  CCCAGATGCTCCTCCAGG  1196