BAC Information

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BAC

Clone NameB6Ng01-181N14
Chromosome1 (Build37)
Map Location 142,610,501 - 142,611,021
singlet/doubletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N14.bB6Ng01-181N14.g
ACCGA007898GA007899
length9451,049
definitionB6Ng01-181N14.b B6Ng01-181N14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagttcttagccacattttttaatgggtttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttccaattcattgaagaattgagttggaatttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatcccatgagcatggggagatctttccatct
tctgagatcttcttctattgagaaggtgttgtttccctaatttcttctca
gcctgtttatctttgtatagaagaaaggccattggacttgtttga
gaattctttgtttagctctgagccccatttttaatagggttatttggctt
tctggagaccaatttcttgagtcctttatatatattggatacttgctccc
tattggatttagcattggtaaagatcttttccaaatctgttggatgccga
tttgtcttactgtgttctttgccttacagaagctttgcaattttatgagg
tcccatttgtcaatttttgatcttacagcacaagccattgctgttctgtt
caggaatatgtctcctgtgcccatatcttcgaggctcttcaccactttct
cctctataagttccagcatctctggttttatgtggagttccttgatatcc
acttagacctgagctttgtacaaggggacaaaaatgaaataattcacatt
cttctacatgctaaccgccagttgagccagcaccatttgttgaaaatgct
gttttctttccactggatagttttatctcctttgtcaaagatcaagtaac
aataggcatgtgggttcatttctaggtcttcgattctattccattgatct
acctatctgttactgtaccagaaccatacagtttttatcacagttgctct
gtagtacagcttgaggtcaggcatggtgattccttccaccagagattctt
ttattgtggagaatagtttttgctaccctaggttttttgttattgcagat
gaatttgcaaattgccctttctaacttggtgaaaaattgagtttggaatt
ttgatggggattgcattaaatctatagattttcttttggcatgatagcta
ttttgactgtattaatttgtgcccaatccatgagcatgggagatcttttc
catcttctgagatctttcaatttcttgtagtaggaggccagccctgcaca
ttaaataattatctcaactagaagtattcctttagaggccttagtttttt
ggccctgcttttatgccacgttgtttggaaagactctgaacctgagttac
caaataaaaggctgtcttgcctaccaatgttataaccctcttaaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142610501_142611021
seq2: B6Ng01-181N14.b_564_991 (reverse)

seq1  TCAAACAAGT-CAATGGCCTTTC-TCTATACAAAGAATAAACAGGCTGAG  48
      |||||||||| |||||||||||| ||||||||||| ||||||||||||||
seq2  TCAAACAAGTCCAATGGCCTTTCTTCTATACAAAG-ATAAACAGGCTGAG  49

seq1  AAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAA  98
       |||||||||||||||||||| ||||||||||||                
seq2  -AAGAAATTAGGGAAACAACA-CCTTCTCAATAG----------------  81

seq1  ATATCTTGGCGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAA  148
                                                        
seq2  --------------------------------------------------  81

seq1  ACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA  198
                                 |||||||||||||||||||||||
seq2  ---------------------------AAGAAGATCTCAGAAGATGGAAA  104

seq1  GATCT-CCCATGCTCAT-GGATTGGCAGGATCAACATTGTAAAAATGGCT  246
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCTCCCCATGCTCATGGGATTGGCAGGATCAACATTGTAAAAATGGCT  154

seq1  ATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCC  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATC-AAATTCC  203

seq1  AACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGA  346
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AACTCAATTCTTCAATGAATTGGAAGGAGCAATTTGCAAATTCGTCTGGA  253

seq1  ATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACT  303

seq1  TCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGT  446
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGT  353

seq1  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGA  403

seq1  ATAGAATTGAAGATCCAGAAATGAA  521
      ||||||||||||| |||||||||||
seq2  ATAGAATTGAAGACCCAGAAATGAA  428