BAC Information

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BAC

Clone NameB6Ng01-181N23
Chromosome1 (Build37)
Map Location 24,633,934 - 24,880,048
singlet/doubletdoublet
Overlap geneLmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N23.bB6Ng01-181N23.g
ACCGA007916GA007917
length8751,065
definitionB6Ng01-181N23.b B6Ng01-181N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,879,510 - 24,880,048)(24,633,934 - 24,634,980)
sequence
gaattccacggtttggtgtcttacaataaggtcttcagtccatttggaat
tgatttttgagcagggtaagagatattgatctagtttcttttacaagtga
atatctatttttccagcactttttgatcatgaccttttcttccaaataca
catttgacacttttgtcaagaattaggtggctataacttggtgggtttat
ttctaaattaatctatcccattggtctctatgtttattttgtgcctgtgc
cagtaccttacagtttttagtgtcacagctctgtgctatagttaatgcgt
acatattgctctttctgttaggattactttggcgatctcagaggacgctg
catttctatgaagagattgtttatctgggggagaatgtgattggaatttt
gatggaattgcattgaatgtgcagtttgctttctgcacgactgccaattt
tataatactaaccaatggcagcctttgtcttttaagatacattctgagat
tagaggcaaaatatcaccatatccagggtcttttcaaagtaatcccacag
aagaatagggagttaagacagaaaacagacaagggttgtgactacgagtg
aatttcttacatgatttatgtattttttgtattttttatatttattaaac
caaagggatttttaaaatggagtaaatttttttccaaccgaagaagtgaa
gaaatagagaacaggaaagaactcttggggaattgcaggcagaagtgcac
gttttctctgtccaatattcacctctaccaacctctacagacaacatttc
cccatttgttagatgctgcaaactttacgaagagtgaaataaatcattct
ctctaaccaatttactttgcagcat

gaattcagagctcccatttggggagtttcatccgaaaaccaaatagctgt
gacaacagccaagtcatttatggtctagaaccatttggtgatgtacatct
caagtgggatgcatggatgtctaaggcaacaccaccagatgtgagcagga
aaaaaaatgaatgaagcagccctctgtctttagggaaccatgattctgag
gtattagtcagatgtgacagaaaaataagagttgtaaacagcattctatg
tctagaagagagaaacccaatcttcccacagagaaaagattaaaaaaaaa
aagagggggtggggtaaaactacagcataagcaaagatagcaaagtaacg
aagtgcacaaccatctccaggggttacaatagcctggtagcaactgagct
gtgagaggggtataggcaaggctggacatttacctaggctttacaagaag
tcccaagcagtctattatctttgggcaatacactgcactacaaattgtgt
tcctagagctgtcttgtgatctcggcattaatctctctaattgactgttc
caacaggtagagggcacatttctggctattccgaaggctatttaagtaag
ccgtgtcccatttgaaaactgaagagtcataaagcacattgaggatgaac
gcgttctgggttccaattccatgtctgccagtcgttagttatgtgatgtc
ttttgcatgctatttagtatccctgtgctgtggtatcttacacatgtaca
gcacagaggggtgatctattggagtaagcttctgtgaaagggaagaagat
gaccaaagtaatgactacacatttttttgatgaagtatgaaattccaggt
aaagcacaaaagtcccattccattgtttctttctccccctcccctccttc
ctcctcctttttgtagctgagctgtccccaaactcttccatgctgaactg
gaattacaaacacaccattactgttgccttaactgccttttcactgcttt
taccattctttttttttgaaatctactttctctcatcgcaggggagaaag
gggaccattctgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24879510_24880048
seq2: B6Ng01-181N23.b_376_919 (reverse)

seq1  ATGCTGC-AAGTAAATT-GTTAGAGAGAATGATTTATTTCACTCTTC-TA  47
      ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
seq2  ATGCTGCAAAGTAAATTGGTTAGAGAGAATGATTTATTTCACTCTTCGTA  50

seq1  AAGTTTGCAGCATCTAAC-AATGGGGAAATGTTGTCTGTAGAGGTTGGTA  96
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTTTGCAGCATCTAACAAATGGGGAAATGTTGTCTGTAGAGGTTGGTA  100

seq1  GAGGTGAATATTGGACAGAG-AAACGTGCACTTCTGCCTGCAATTCCCCA  145
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGTGAATATTGGACAGAGAAAACGTGCACTTCTGCCTGCAATTCCCCA  150

seq1  AGAGTTCTTTCCTGTTCTCTATTTCTTCACTTCTTCGGTTGGAAAAAAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTTTCCTGTTCTCTATTTCTTCACTTCTTCGGTTGGAAAAAAAT  200

seq1  TTACTCCATTTTAAAAATCCCTTTGGTTTAATAAATATAAAAAATACAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCATTTTAAAAATCCCTTTGGTTTAATAAATATAAAAAATACAAA  250

seq1  AAATACATAAATCATGTAAGAAATTCACTCGTAGTCACAACCCTTGTCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAATCATGTAAGAAATTCACTCGTAGTCACAACCCTTGTCTG  300

seq1  TTTTCTGTCTTAACTCCCTATTCTTCTGTGGGATTACTTTGAAAAGACCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTCTTAACTCCCTATTCTTCTGTGGGATTACTTTGAAAAGACCC  350

seq1  TGGATATGGTGATATTTTGCCTCTAATCTCAGAATGTATCTTAAAAGACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGTGATATTTTGCCTCTAATCTCAGAATGTATCTTAAAAGACA  400

seq1  AAGGCTGCCATTGGTTAGTATTATAAAATTGGCAGTCGTGCAGAAAGCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCCATTGGTTAGTATTATAAAATTGGCAGTCGTGCAGAAAGCAA  450

seq1  ACTGCACATTCAATGCAATTCCATCAAAATTCCAATCACATTCTCCCCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACATTCAATGCAATTCCATCAAAATTCCAATCACATTCTCCCCCA  500

seq1  GATAAACAATCTCTTCATAGAAATGCAGCGTCCTCTGAGATCGC  539
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAATCTCTTCATAGAAATGCAGCGTCCTCTGAGATCGC  544


seq1: chr1_24633934_24634980
seq2: B6Ng01-181N23.g_65_1129

seq1  GAATTCAGAGCTCCCATTTGGGGAGTTTCATCCGAAAACCAAATAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCCCATTTGGGGAGTTTCATCCGAAAACCAAATAGCTGT  50

seq1  GACAACAGCCAAGTCATTTATGGTCTAGAACCATTTGGTGATGTACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGCCAAGTCATTTATGGTCTAGAACCATTTGGTGATGTACATCT  100

seq1  CAAGTGGGATGCATGGATGTCTAAGGCAACACCACCAGATGTGAGCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGATGCATGGATGTCTAAGGCAACACCACCAGATGTGAGCAGGA  150

seq1  AAAAAAATGAATGAAGCAGCCCTCTGTCTTTAGGGAACCATGATTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGAATGAAGCAGCCCTCTGTCTTTAGGGAACCATGATTCTGAG  200

seq1  GTATTAGTCAGATGTGACAGAAAAATAAGAGTTGTAAACAGCATTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTCAGATGTGACAGAAAAATAAGAGTTGTAAACAGCATTCTATG  250

seq1  TCTAGAAGAGAGAAACCCAATCTTCCCACAGAGAAAAGATTAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGAGAGAAACCCAATCTTCCCACAGAGAAAAGATTAAAAAAAAA  300

seq1  AAGAGGGGGTGGGGTAAAACTACAGCATAAGCAAAGATAGCAAAGTAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGGTGGGGTAAAACTACAGCATAAGCAAAGATAGCAAAGTAACG  350

seq1  AAGTGCACAACCATCTCCAGGGGTTACAATAGCCTGGTAGCAACTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAACCATCTCCAGGGGTTACAATAGCCTGGTAGCAACTGAGCT  400

seq1  GTGAGAGGGGTATAGGCAAGGCTGGACATTTACCTAGGCTTTACAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGGGTATAGGCAAGGCTGGACATTTACCTAGGCTTTACAAGAAG  450

seq1  TCCCAAGCAGTCTATTATCTTTGGGCAATACACTGCACTACAAATTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAGTCTATTATCTTTGGGCAATACACTGCACTACAAATTGTGT  500

seq1  TCCTAGAGCTGTCTTGTGATCTCGGCATTAATCTCTCTAATTGACTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTGTCTTGTGATCTCGGCATTAATCTCTCTAATTGACTGTTC  550

seq1  CAACAGGTAGAGGGCACATTTCTGGCTATTCCGAAGGCTATTTAAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTAGAGGGCACATTTCTGGCTATTCCGAAGGCTATTTAAGTAAG  600

seq1  CCGTGTCCCATTTGAAAACTGAAGAGTCATAAAGCACATTGAGGATGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCCCATTTGAAAACTGAAGAGTCATAAAGCACATTGAGGATGAAC  650

seq1  GCGTTCTGGGTTCCAATTCCATGTCTGCCAGTCGTTAGTTATGTGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTGGGTTCCAATTCCATGTCTGCCAGTCGTTAGTTATGTGATGTC  700

seq1  TTTTGCATGCTATTTAGTATCCCTGTGCTGTGGTATCTTACACATGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATGCTATTTAGTATCCCTGTGCTGTGGTATCTTACACATGTACA  750

seq1  GCACAGAGGGGTGATCTATTGGAGTAAGC-TCTGTGAAAGGGAAGAAGAT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCACAGAGGGGTGATCTATTGGAGTAAGCTTCTGTGAAAGGGAAGAAGAT  800

seq1  GACC-AAGTAATGACTACACA-TTTTTTGATGAAGTATGAAATT-CAGGG  846
      |||| |||||||||||||||| |||||||||||||||||||||| |||| 
seq2  GACCAAAGTAATGACTACACATTTTTTTGATGAAGTATGAAATTCCAGGT  850

seq1  TAAGCACAAAAGT-CCATTCCATTG-TTCTTTCTCCCCCTCCCCTCCTT-  893
       |||||||||||| ||||||||||| ||||||||||||||||||||||| 
seq2  AAAGCACAAAAGTCCCATTCCATTGTTTCTTTCTCCCCCTCCCCTCCTTC  900

seq1  CTCCTCC-TTTTGTAGCTGAGGCTGTCCCCAAACTCTTCCATGCTGAACT  942
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  CTCCTCCTTTTTGTAGCTGA-GCTGTCCCCAAACTCTTCCATGCTGAACT  949

seq1  GG-ATTACAAACACA-CATTACTG-TGCC-TAACTG-CTTTTCACTGCTT  987
      || |||||||||||| |||||||| |||| |||||| |||||||||||||
seq2  GGAATTACAAACACACCATTACTGTTGCCTTAACTGCCTTTTCACTGCTT  999

seq1  TTAACA-TCTTTTTTTTTTAAATCTACTT--TCTCATCG--AGGGAGAAA  1032
      ||| || ||||||||||| ||||||||||  ||||||||   ||||||||
seq2  TTACCATTCTTTTTTTTTGAAATCTACTTTCTCTCATCGCAGGGGAGAAA  1049

seq1  AGGGAACA-TCTGTAT  1047
       |||| || |||||||
seq2  GGGGACCATTCTGTAT  1065


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