BAC Information

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BAC

Clone NameB6Ng01-181P05
Chromosome1 (Build37)
Map Location 51,423,700 - 51,584,288
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneLOC100041993, Tmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181P05.bB6Ng01-181P05.g
ACCGA007975GA007976
length667972
definitionB6Ng01-181P05.b B6Ng01-181P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,423,700 - 51,424,365)(51,583,676 - 51,584,288)
sequence
gaattccctggtactaagagaataaaataacgaaatactattcttcccag
gatcagtgctcctctagcctcactttagacacgtgagtgtcgcggtcacc
agcccagtggggcacaccatcaagtccacagagaaaaacagaatgaaggg
gagtgtagtcgtcctcttggtcctgacatcacaaatgcactccacccatt
ggttcccaagcacagtagctagaaaccctctcctgaagccattcaagcca
gtccactacccacagcacacattcccttttgctacgctgcaacttccttc
atccgatgttctctctaaactttgtctctacatccttctcgatctttccc
atccgtccagccctgctcacatcctacatccccatgaggttctctccaag
tcctcccgtggagttaatctgtttcatttcctcactctaatgccattaaa
tttttatccagatatgtagtattactacttatttagggaacatttttttt
aagtggaaggagaatacatttctaattttaacctttggctttccccaagt
tcatatgctttgtgggtattgggatgtggaaagggagggaaagaaaaagt
gggagagagaagaaaaagaggttcatgccacagagcacatttggtgttgg
gttcaggttgggaagcc

gaattctctaactgtccctacatgttcatcaagacacttcatttaagcta
tgcctctgtcatgggcagtgagttgctatttcatttgcttctatatttta
taaaatataggtttacacatcggttaaaaatagtgatatagttagtggaa
aagtttaaaatgaatgtaccacaatgttcattatcctatttttgtatttc
ttcatgtttgggggcactgaaagcatgaaacacgctaccaacctgggcct
ttcttatcgtagagaggcccacacctgagcagactatgtgcctctaactg
tgggaaaactactaagatccaagtccaccatgaccagatggtccctgagc
taggcacaaaatgggagactcccttgttaggaggttttctcctccttaac
cttgtctgggggattctgagcacccacacttacttctacctgaaaaaaaa
aataatgtaagacaaaaaacctggagttctccatgctaatgaggtatcta
gataggtttcagtgttcagccaatgagcttcccttcctgagcattccttc
ccccaaaaaagatatttaatccctggttcaccttgagtaagatatataca
ttcacatctacgatcaaatgaaaactgtttgggcaagcaaggactgtctc
ttcatccaggatcactttcgggggaggcctttgtcataaagaactgcaac
taaatctcccagagaaggcctcctctctcccagcccctctgtactctggg
cactcacaccaaacctggttcagaccccgttgtgggctcagccttcacct
tcctgcctggctcatggactccctgaggggaagcatgggccagagaaccc
atcccgactcgcagtggtaccccagtggttgcctggttacacaagagact
ggaaaccacagcaatcctctcagatcctgcttgttcccacctgagaaaaa
cccagcctgagaacctcccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51423700_51424365
seq2: B6Ng01-181P05.b_46_712

seq1  GAATTCCCTGGTACTAAGAGAATAAAATAACGAAATACTATTCTTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGTACTAAGAGAATAAAATAACGAAATACTATTCTTCCCAG  50

seq1  GATCAGTGCTCCTCTAGCCTCACTTTAGACACGTGAGTGTCGCGGTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGCTCCTCTAGCCTCACTTTAGACACGTGAGTGTCGCGGTCACC  100

seq1  AGCCCAGTGGGGCACACCATCAAGTCCACAGAGAAAAACAGAATGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGGGGCACACCATCAAGTCCACAGAGAAAAACAGAATGAAGGG  150

seq1  GAGTGTAGTCGTCCTCTTGGTCCTGACATCACAAATGCACTCCACCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGTCGTCCTCTTGGTCCTGACATCACAAATGCACTCCACCCATT  200

seq1  GGTTCCCAAGCACAGTAGCTAGAAACCCTCTCCTGAAGCCATTCAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAAGCACAGTAGCTAGAAACCCTCTCCTGAAGCCATTCAAGCCA  250

seq1  GTCCACTACCCACAGCACACATTCCCTTTTGCTACGCTGCAACTTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTACCCACAGCACACATTCCCTTTTGCTACGCTGCAACTTCCTTC  300

seq1  ATCCGATGTTCTCTCTAAACTTTGTCTCTACATCCTTCTCGATCTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGATGTTCTCTCTAAACTTTGTCTCTACATCCTTCTCGATCTTTCCC  350

seq1  ATCCGTCCAGCCCTGCTCACATCCTACATCCCCATGAGGTTCTCTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTCCAGCCCTGCTCACATCCTACATCCCCATGAGGTTCTCTCCAAG  400

seq1  TCCTCCCGTGGAGTTAATCTGTTTCATTTCCTCACTCTAATGCCATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCGTGGAGTTAATCTGTTTCATTTCCTCACTCTAATGCCATTAAA  450

seq1  TTTTTATCCAGATATGTAGTATTACTACTTATTTAGGGAACATTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCAGATATGTAGTATTACTACTTATTTAGGGAACATTTTTTTT  500

seq1  AAGTGGAAGGAGAATACATTTCTAATTTTAACCTTTGGCTTTCCCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGGAGAATACATTTCTAATTTTAACCTTTGGCTTTCCCCAAGT  550

seq1  TCATATGCTTTGTGGGTATTGGGATGTGGAAAGGGAGGGAAAGAAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTTTGTGGGTATTGGGATGTGGAAAGGGAGGGAAAGAAAAAGT  600

seq1  GGGAGAGAGAAGAAAAAGAGGTTCATGCCACAGAGCACATTTGGTGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAAGAAAAAGAGGTTCATGCCACAGAGCACATTTGGTGTTGG  650

seq1  GTTCAGGTT-GGAAGCC  666
      ||||||||| |||||||
seq2  GTTCAGGTTGGGAAGCC  667


seq1: chr1_51583676_51584288
seq2: B6Ng01-181P05.g_71_683 (reverse)

seq1  TCGTAGATGTGAATGTATATATCTTACTCAAGGTGAACCAGGGATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGATGTGAATGTATATATCTTACTCAAGGTGAACCAGGGATTAAAT  50

seq1  ATCTTTTTTGGGGGAAGGAATGCTCAGGAAGGGAAGCTCATTGGCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTGGGGGAAGGAATGCTCAGGAAGGGAAGCTCATTGGCTGAAC  100

seq1  ACTGAAACCTATCTAGATACCTCATTAGCATGGAGAACTCCAGGTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACCTATCTAGATACCTCATTAGCATGGAGAACTCCAGGTTTTTT  150

seq1  GTCTTACATTATTTTTTTTTTCAGGTAGAAGTAAGTGTGGGTGCTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATTATTTTTTTTTTCAGGTAGAAGTAAGTGTGGGTGCTCAGAA  200

seq1  TCCCCCAGACAAGGTTAAGGAGGAGAAAACCTCCTAACAAGGGAGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGACAAGGTTAAGGAGGAGAAAACCTCCTAACAAGGGAGTCTCC  250

seq1  CATTTTGTGCCTAGCTCAGGGACCATCTGGTCATGGTGGACTTGGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGCCTAGCTCAGGGACCATCTGGTCATGGTGGACTTGGATCTT  300

seq1  AGTAGTTTTCCCACAGTTAGAGGCACATAGTCTGCTCAGGTGTGGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTTCCCACAGTTAGAGGCACATAGTCTGCTCAGGTGTGGGCCTC  350

seq1  TCTACGATAAGAAAGGCCCAGGTTGGTAGCGTGTTTCATGCTTTCAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGATAAGAAAGGCCCAGGTTGGTAGCGTGTTTCATGCTTTCAGTGC  400

seq1  CCCCAAACATGAAGAAATACAAAAATAGGATAATGAACATTGTGGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACATGAAGAAATACAAAAATAGGATAATGAACATTGTGGTACAT  450

seq1  TCATTTTAAACTTTTCCACTAACTATATCACTATTTTTAACCGATGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAACTTTTCCACTAACTATATCACTATTTTTAACCGATGTGTA  500

seq1  AACCTATATTTTATAAAATATAGAAGCAAATGAAATAGCAACTCACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATTTTATAAAATATAGAAGCAAATGAAATAGCAACTCACTGCC  550

seq1  CATGACAGAGGCATAGCTTAAATGAAGTGTCTTGATGAACATGTAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGAGGCATAGCTTAAATGAAGTGTCTTGATGAACATGTAGGGAC  600

seq1  AGTTAGAGAATTC  613
      |||||||||||||
seq2  AGTTAGAGAATTC  613


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