BAC Information

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BAC

Clone NameB6Ng01-181P11
Chromosome1 (Build37)
Map Location 32,142,100 - 32,286,647
singlet/doubletdoublet
Overlap geneKhdrbs2
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181P11.bB6Ng01-181P11.g
ACCGA007986GA007987
length1,1891,114
definitionB6Ng01-181P11.b B6Ng01-181P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,285,439 - 32,286,647)(32,142,100 - 32,143,214)
sequence
gaattcctgtcttgaaaaaaaaaaaagaaacaaaaacaaaaaacaaaaca
aaacaaaaaacaaaagaagagaaaagaaaagaagagaagagaagagaaga
gaagagaagagaagagaagagaagagaagagaaaagacccgaaaagatat
tgttaaaaaattataaggcaactatgcttgggattttcatggaaaagttg
tagaataaatatagaagaaatgaaaccttccttccaaaagtgttacatta
tgtgataagaaacaaactgatcatacatagcaatttcaaatcccttagga
tgtgtaactaaattgaacagtttcacactctcccgaaaattccatcacaa
cctaaggcaaccatgataatgttatataccaagatatcaagttaaaagtt
gcaaactcaatttacaacatagactaaacaatgcttctgccaagctgtat
tttactgagaaaaacctgtggttaaaatctaatcagcatgatttgtaact
ggtatcctgcaatacatcacctaacatttactgaaaactttccttaagat
tcctctgagagcaaggttgctagggataatgggtcctaaaggagtttacc
cttctcatagcacatgccgccaactcaaatattgatcacaccaagcatta
aaaatgtgctttcgtgaggcatgcatgctttcagactaataaacatgaaa
gctctctactgagtagagcagacaaagcccatgaatttataaacacagat
ttcagggcactgataagaatgtaaatgcttgcacaaacagatgaagcata
tccaggtaagcagagaacaggaaggattaattaatgtgtggcatatgtga
gaggtctctgaaagtttgaaactagaaagggttgtgaatttttaaacatg
ctgagaacaatgttgtgttggctagtttaaggtatcatatcatggaaatt
taatagtttacaatgacacagtccatgagctacaaattggaaaacatact
tcaattaaataagtgtctcagaaagccacccttatcatagcttagacaat
ggattagaagaataaaatattctatctgcaaatgtgaatatactagaaca
gtaagtatttatatatagacgctgaggtagttcaactatatcaaataatt
aattccagtcatccagtttagcattggaacttcagcgtt
gaattcaaatcacaactctggtagggagtgatggctgcatcctttggcat
aagacatcaagaagccattttcttgtgtctttccttagcttgttgcttgt
ctcaccaggcaaatggttaaattcaatatgtttccaaaacgaatttgaaa
atatttagctttaagtgtctctttatgataagaaagtgtcatttttcttc
tttttctggtgatctgagtggatggttttctatttctcaggttggtaaca
tatgggcagagtttatggaagacatgtttccaagaaatcttgtatcgggg
gaggattgtaaaccatttattcatatactaacttgcaggaggtttcacac
tcacatgaagtaatcttttacactgaagattcatctggcattgctacaca
catgggaacataaatattcttcctggagagtgagatcatatccatattga
tctgaaaccgtaactaccatagtagcacatgaacactcgctcttttgtgt
aaaataattacactatgatataatctttagagaaagctggaaggcattga
ggtggatggacctttgattcttatgtactgtgctgaggacaaaaagtaac
ccactaatgtataaatctgaaaaattattccaggtaataaaattggaaac
atttttaacatttcaatatttgtccactgatcagaaaggaaaaaaaaaaa
ccctatgtactgtgcaatagcaacaaatattgagaataagtagaaatgtt
tctacaaagataaaaacgggctccattgaagcacaggaaaatttgttatt
tgaaagtgcaaagcaaatatatttatatataagacatgtataactatgaa
gacgaatctttgaacactaacacagagagaagaaaactaggctaacttta
caaaggtgtgtgaatagttgtcatgtcaactagactgcatttatattacc
ttatctgattaaagagaatacagcttgtgagagtgtcctgcttcagcctc
tcaagaaaggatgactaaggagcagtacctgaagtggtatccggacagat
gagaaagggggagaaagatgaagctgaacgccacattcaccttggtctct
gtgcctttctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32285439_32286647
seq2: B6Ng01-181P11.b_44_1232 (reverse)

seq1  AACGCTGAAGTTCAAAATGCATAAAAACTGGAATGACTGAATGTTATTTA  50
      |||||||||||||  |||||    ||||||| ||||||| |  ||| |||
seq2  AACGCTGAAGTTC-CAATGC---TAAACTGG-ATGACTGGA-ATTAATTA  44

seq1  TTTTAATATAATTTTATACTACCTTAAGGCGTCTATATATAAATTACTTA  100
       ||| |||||   ||  ||||||| |  ||||||||||||||| ||||| 
seq2  -TTTGATATA--GTTGAACTACCTCA--GCGTCTATATATAAA-TACTT-  87

seq1  ACTGTTCTAGTATATTCACATTTGCAGGATAGAATATTTTATTCTTCTAA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGTTCTAGTATATTCACATTTGCA-GATAGAATATTTTATTCTTCTAA  136

seq1  TCCATTTGTCTAAGCTAATGATAAGGGTGGCTTTCTGAGACACTTATTTT  200
      |||| ||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TCCA-TTGTCTAAGCT-ATGATAAGGGTGGCTTTCTGAGACACTTA-TTT  183

seq1  ATTTGAAGTATGTTTTTCCAATTTGTAGCTCATGGACTGTTGTCATTTGT  250
      | |||||||||| |||||||||||||||||||||||||| ||||| ||||
seq2  AATTGAAGTATG-TTTTCCAATTTGTAGCTCATGGACTG-TGTCA-TTGT  230

seq1  AAACTATTAAATTTCCATGATATGATACCTTAAACTAGCCAACACAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTAAATTTCCATGATATGATACCTTAAACTAGCCAACACAACAT  280

seq1  TGTTCTCAGCATGTTTAAAAATTCACAACCCTTTCTAGTTTCAAACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGCATGTTTAAAAATTCACAACCCTTTCTAGTTTCAAACTTTC  330

seq1  AGAGACCTCTCACATATGCCACACATTAATTAATCCTTCCTGTTCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCTCACATATGCCACACATTAATTAATCCTTCCTGTTCTCTGC  380

seq1  TTACCTGGATATGCTTCATCTGTTTGTGCAAGCATTTACATTCTTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGATATGCTTCATCTGTTTGTGCAAGCATTTACATTCTTATCAG  430

seq1  TGCCCTGAAATCTGTGTTTATAAATTCATGGGCTTTGTCTGCTCTACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGAAATCTGTGTTTATAAATTCATGGGCTTTGTCTGCTCTACTCA  480

seq1  GTAGAGAGCTTTCATGTTTATTAGTCTGAAAGCATGCATGCCTCACGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGCTTTCATGTTTATTAGTCTGAAAGCATGCATGCCTCACGAAA  530

seq1  GCACATTTTTAATGCTTGGTGTGATCAATATTTGAGTTGGCGGCATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTAATGCTTGGTGTGATCAATATTTGAGTTGGCGGCATGTGC  580

seq1  TATGAGAAGGGTAAACTCCTTTAGGACCCATTATCCCTAGCAACCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAGGGTAAACTCCTTTAGGACCCATTATCCCTAGCAACCTTGCT  630

seq1  CTCAGAGGAATCTTAAGGAAAGTTTTCAGTAAATGTTAGGTGATGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAATCTTAAGGAAAGTTTTCAGTAAATGTTAGGTGATGTATTG  680

seq1  CAGGATACCAGTTACAAATCATGCTGATTAGATTTTAACCACAGGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACCAGTTACAAATCATGCTGATTAGATTTTAACCACAGGTTTTT  730

seq1  CTCAGTAAAATACAGCTTGGCAGAAGCATTGTTTAGTCTATGTTGTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAAATACAGCTTGGCAGAAGCATTGTTTAGTCTATGTTGTAAAT  780

seq1  TGAGTTTGCAACTTTTAACTTGATATCTTGGTATATAACATTATCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGCAACTTTTAACTTGATATCTTGGTATATAACATTATCATGGT  830

seq1  TGCCTTAGGTTGTGATGGAATTTTCGGGAGAGTGTGAAACTGTTCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGGTTGTGATGGAATTTTCGGGAGAGTGTGAAACTGTTCAATTT  880

seq1  AGTTACACATCCTAAGGGATTTGAAATTGCTATGTATGATCAGTTTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACATCCTAAGGGATTTGAAATTGCTATGTATGATCAGTTTGTTT  930

seq1  CTTATCACATAATGTAACACTTTTGGAAGGAAGGTTTCATTTCTTCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACATAATGTAACACTTTTGGAAGGAAGGTTTCATTTCTTCTATA  980

seq1  TTTATTCTACAACTTTTCCATGAAAATCCCAAGCATAGTTGCCTTATAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTACAACTTTTCCATGAAAATCCCAAGCATAGTTGCCTTATAAT  1030

seq1  TTTTTAACAATATCTTTTCGGGTCTTTTCTCTTCTCTTCTCTTCTCTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAATATCTTTTCGGGTCTTTTCTCTTCTCTTCTCTTCTCTTCT  1080

seq1  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCTTTTCTCTTCTTTTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCTTTTCTCTTCTTTTGT  1130

seq1  TTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTCTTTTTTTTTTTTCAAGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTCTTTTTTTTTTTTCAAGA  1180

seq1  CAGGAATTC  1209
      |||||||||
seq2  CAGGAATTC  1189

seq1: chr1_32142100_32143214
seq2: B6Ng01-181P11.g_63_1176

seq1  GAATTCAAATCACAACTCTGGTAGGGAGTGATGGCTGCATCCTTTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCACAACTCTGGTAGGGAGTGATGGCTGCATCCTTTGGCAT  50

seq1  AAGACATCAAGAAGCCATTTTCTTGTGTCTTTCCTTAGCTTGTTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCAAGAAGCCATTTTCTTGTGTCTTTCCTTAGCTTGTTGCTTGT  100

seq1  CTCACCAGGCAAATGGTTAAATTCAATATGTTTCCAAAACGAATTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGCAAATGGTTAAATTCAATATGTTTCCAAAACGAATTTGAAA  150

seq1  ATATTTAGCTTTAAGTGTCTCTTTATGATAAGAAAGTGTCATTTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGCTTTAAGTGTCTCTTTATGATAAGAAAGTGTCATTTTTCTTC  200

seq1  TTTTTCTGGTGATCTGAGTGGATGGTTTTCTATTTCTCAGGTTGGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGTGATCTGAGTGGATGGTTTTCTATTTCTCAGGTTGGTAACA  250

seq1  TATGGGCAGAGTTTATGGAAGACATGTTTCCAAGAAATCTTGTATCGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCAGAGTTTATGGAAGACATGTTTCCAAGAAATCTTGTATCGGGG  300

seq1  GAGGATTGTAAACCATTTATTCATATACTAACTTGCAGGAGGTTTCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTAAACCATTTATTCATATACTAACTTGCAGGAGGTTTCACAC  350

seq1  TCACATGAAGTAATCTTTTACACTGAAGATTCATCTGGCATTGCTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAAGTAATCTTTTACACTGAAGATTCATCTGGCATTGCTACACA  400

seq1  CATGGGAACATAAATATTCTTCCTGGAGAGTGAGATCATATCCATATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAACATAAATATTCTTCCTGGAGAGTGAGATCATATCCATATTGA  450

seq1  TCTGAAACCGTAACTACCATAGTAGCACATGAACACTCGCTCTTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCGTAACTACCATAGTAGCACATGAACACTCGCTCTTTTGTGT  500

seq1  AAAATAATTACACTATGATATAATCTTTAGAGAAAGCTGGAAGGCATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTACACTATGATATAATCTTTAGAGAAAGCTGGAAGGCATTGA  550

seq1  GGTGGATGGACCTTTGATTCTTATGTACTGTGCTGAGGACAAAAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATGGACCTTTGATTCTTATGTACTGTGCTGAGGACAAAAAGTAAC  600

seq1  CCACTAATGTATAAATCTGAAAAATTATTCCAGGTAATAAAATTGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATGTATAAATCTGAAAAATTATTCCAGGTAATAAAATTGGAAAC  650

seq1  ATTTTTAACATTTCAATATTTGTCCACTGATCAGAAAGG-AAAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTTTAACATTTCAATATTTGTCCACTGATCAGAAAGGAAAAAAAAAAA  700

seq1  CCCTATGTACTGTGCAATAGCAACAAATATTGAGAATAAGTAGAAATGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTACTGTGCAATAGCAACAAATATTGAGAATAAGTAGAAATGTT  750

seq1  TCTACAAAGATAAAAACGGGCTCCATTGAAGCACAGGAAAATTTGTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGATAAAAACGGGCTCCATTGAAGCACAGGAAAATTTGTTATT  800

seq1  TGAAAGTGCAAAGCAAATATATTTATATATAAGACATGTATAACTATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCAAAGCAAATATATTTATATATAAGACATGTATAACTATGAA  850

seq1  GACGAATCTTTGAACACTAACACAGAGAGAAGAAAACTAGGCTAACTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAATCTTTGAACACTAACACAGAGAGAAGAAAACTAGGCTAACTTTA  900

seq1  CAAAGGTGTGTGAATAGTTGTCATGTCAACTAGACTGCATTTATAATTAC  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAAGGTGTGTGAATAGTTGTCATGTCAACTAGACTGCATTTAT-ATTAC  949

seq1  C-TATCTGATTAAAGAG-ATACAGC-TGTGAGAGTGT-CTGCTTCAGCCT  995
      | ||||||||||||||| ||||||| ||||||||||| ||||||||||||
seq2  CTTATCTGATTAAAGAGAATACAGCTTGTGAGAGTGTCCTGCTTCAGCCT  999

seq1  CTCAAGAAAGGATTGACTAAGGAGGCAGTACCTGAAGGTGGGAATCCCGG  1045
      |||||||||||| |||||||||| |||||||||||| |||| |   ||||
seq2  CTCAAGAAAGGA-TGACTAAGGA-GCAGTACCTGAA-GTGGTA--TCCGG  1044

seq1  ACAGATGAGAAAGGGGAGAAAAGAAGGAGAGCTGAAGCGCACATTCA-CT  1094
      ||||||||||||||||   ||||| |   |||||||   |||||||| ||
seq2  ACAGATGAGAAAGGGGGAGAAAGATG--AAGCTGAACGCCACATTCACCT  1092

seq1  TTGTCTCTGTG-CTTCCTAGCT  1115
      | ||||||||| ||| ||||||
seq2  TGGTCTCTGTGCCTTTCTAGCT  1114