BAC Information

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BAC

Clone NameB6Ng01-182A12
Chromosome1 (Build37)
Map Location 160,043,657 - 160,185,061
singlet/doubletdoublet
Overlap gene6430517E21Rik
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182A12.bB6Ng01-182A12.g
ACCGA008032GA008033
length1,1041,041
definitionB6Ng01-182A12.b B6Ng01-182A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,183,962 - 160,185,061)(160,043,657 - 160,044,678)
sequence
gaattccagatccttgagaaaggaaagatcttgttttctcatttgtatat
gttatcgggggtcagggtctgggatggctgtgtccaggctcttggcctcc
ccttgagagtattgaaataaggatcagatggatttgctaaatgagcaaag
gaaattcattcaaagcaaatcagtggtacagatcagaaatcaactgtcag
aattgacagcaggcttcaggaatgaaggtactcaagggcccagattacgg
cctcagccttccttttatggagtccaagaggaggaggaactggttattag
gggcaaggatgactctctacttagatacacagattaaatcccatgaccat
attttgtactgttaatgttctatcccataatgtgtgagtttaaccaaatg
cacatccaactatgcataggcatagggtggtgtataacagagtcttccaa
acagatcacttggggacacagttttatcttatggcctatgtgctcaaaag
cagtctaggccacattgattcccttgcttcagacctgggtgcaagcggag
tacaagtgaatagaatgtaactttgatgggctatagagaggaagaaaagc
atactctgttgttcagagcagagtgcatgagcagttccttgaaggtggga
gtgctaggttgctaacagttgctaggtgcattgtttggagtagtgtgtgt
gtctgtgtgtgtgtgtctctgtgtgtgtctgtgtgggcgcgcacacatat
agcacatgcaggtaaagctctaggctgcccatttgtatttgcaatagaag
tgtttacatagctctaaacaactagagtcctggattatttaggttatgct
tacctgcctcaggttaagtcctcttaagccaagaatcaccaccaaatcct
aggaccagcatgtagcaacttttccatcagttctgagggaaaccctgtaa
agggtctgccccattcctagtgactgattggctccagaccacttggcatc
tacaccccttccagtgtgttcttttcaaatctgtacattatcccataagg
attcaaaccaagacctataggcttagaactaattggtggaatgctttttt
atta

gaattctatgggatattagaaagcctccacactcctggaagttgaacaat
gttctactcaatgatctctgggtcactttctagaattcaatgaaaactaa
atagctaagaaactaaataactttaaaaattactaaaaatatattgtttt
aagaaatatctggttttgtttttgtatttttttcttttacccaagcagtc
cactgcacaattcagagacatcttgcaaccagagcagaagctgattaatc
cagaaacagcagcctagcattactgatggcttaaggagaagtaaatgtgg
caggcagctttccaggtgcttccattgccaggggcactgttggtgatgtc
tgcataaatttttgtgtaagttagggtagcaacaggtaaccagtgagctg
aaaactaagaaggtttccagagaatcatggtattttctgacatttttttt
tcctgcacacatagcctgacaaagatgttttattgttagttgtaatggtc
tctctgtctctctgtctctgtctctctgtctctctgtctctctgcctctc
tctctctctctctctctctctctctcacacacacacacacacacatacac
atacatacacacacactcctatacctgaaagccatttgactttgctgaaa
gctatataaaatctctggatccggtgttgcaatactttggcatgtcctag
cagtcctagcagaaacagaacggcccaatttagaaaggattgcaaggtaa
gcaaaatataagatttgagcttctgctcatccaaagctacaggatctcca
tgacacagggcaacaacaaagataatggggaggagcccccttgaggatac
agttattgatgattgtcacagaagctagagatctcaagcccagactaatg
aatcatttgcaatgaccattttgtaaagttaagatgtggtggggcagaag
ggaatatagtggtggggaacacactgtgacttctactattatttacttac
atgagaacacatttccaattcttaactttgattggtttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160183962_160185061
seq2: B6Ng01-182A12.b_36_1139 (reverse)

seq1  TAAT-AAAAAGCAATCACCAAACTAGTTCTAGGCTTATAAGGTCTTGTGT  49
      |||| |||||||| ||  | || |||||||| || ||| |||||||| ||
seq2  TAATAAAAAAGCATTCCACCAATTAGTTCTAAGCCTAT-AGGTCTTG-GT  48

seq1  CTG-ATCCCTATGGGATAATGTTACAGATTTTGAAAAGGAACACACTGGA  98
       || |||| |||||||||||| |||||| |||||||| ||||||||||||
seq2  TTGAATCCTTATGGGATAATG-TACAGA-TTTGAAAA-GAACACACTGGA  95

seq1  A-GGGTGTAGATGCCAAGTGG-CTGGAG-CAATCAGTCACTA-GAATGGG  144
      | ||||||||||||||||||| |||||| ||||||||||||| |||||||
seq2  AGGGGTGTAGATGCCAAGTGGTCTGGAGCCAATCAGTCACTAGGAATGGG  145

seq1  GCAGACCC-TTACAGGGTTTCCCTCAGAACTGATGG-AAAGTTGCTACAT  192
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GCAGACCCTTTACAGGGTTTCCCTCAGAACTGATGGAAAAGTTGCTACAT  195

seq1  GCTGGTCCTAGGATTT-GTGGTGATTCTTGGCTTAAGAAGGACTTAA-CT  240
      |||||||||||||||| |||||||||||||||||||| ||||||||| ||
seq2  GCTGGTCCTAGGATTTGGTGGTGATTCTTGGCTTAAG-AGGACTTAACCT  244

seq1  GAGGCAGGTAAGCATAAACTTAATAATCCAGGACTCTAGTTGTTTAGAGC  290
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  GAGGCAGGTAAGCATAACCTAAATAATCCAGGACTCTAGTTGTTTAGAGC  294

seq1  TATGTAAACACTTCTATTGCAAATAC-AATTGGCAGCCTAGAGCTTTTAC  339
      |||||||||||||||||||||||||| ||| ||||||||||||| |||||
seq2  TATGTAAACACTTCTATTGCAAATACAAATGGGCAGCCTAGAGC-TTTAC  343

seq1  CTGCATGTGCTATATGTGTGCGCGCCCACACAGACACACACAGAGACACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCTATATGTGTGCGCGCCCACACAGACACACACAGAGACACA  393

seq1  CACACACAGACACACACACTACTCCAAACAATGCACCTAGCAACTGTTAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGACACACACACTACTCCAAACAATGCACCTAGCAACTGTTAG  443

seq1  CAACCTAGCACTCCCACCTTCAAGGAACTGCTCATGCACTCTGCTCTGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGCACTCCCACCTTCAAGGAACTGCTCATGCACTCTGCTCTGAA  493

seq1  CAACAGAGTATGCTTTTCTTCCTCTCTATAGCCCATCAAAGTTACATTCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGTATGCTTTTCTTCCTCTCTATAGCCCATCAAAGTTACATTCT  543

seq1  ATTCACTTGTACTCCGCTTGCACCCAGGTCTGAAGCAAGGGAATCAATGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTGTACTCCGCTTGCACCCAGGTCTGAAGCAAGGGAATCAATGT  593

seq1  GGCCTAGACTGCTTTTGAGCACATAGGCCATAAGATAAAACTGTGTCCCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGACTGCTTTTGAGCACATAGGCCATAAGATAAAACTGTGTCCCC  643

seq1  AAGTGATCTGTTTGGAAGACTCTGTTATACACCACCCTATGCCTATGCAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTGTTTGGAAGACTCTGTTATACACCACCCTATGCCTATGCAT  693

seq1  AGTTGGATGTGCATTTGGTTAAACTCACACATTATGGGATAGAACATTAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATGTGCATTTGGTTAAACTCACACATTATGGGATAGAACATTAA  743

seq1  CAGTACAAAATATGGTCATGGGATTTAATCTGTGTATCTAAGTAGAGAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAAATATGGTCATGGGATTTAATCTGTGTATCTAAGTAGAGAGT  793

seq1  CATCCTTGCCCCTAATAACCAGTTCCTCCTCCTCTTGGACTCCATAAAAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGCCCCTAATAACCAGTTCCTCCTCCTCTTGGACTCCATAAAAG  843

seq1  GAAGGCTGAGGCCGTAATCTGGGCCCTTGAGTACCTTCATTCCTGAAGCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGAGGCCGTAATCTGGGCCCTTGAGTACCTTCATTCCTGAAGCC  893

seq1  TGCTGTCAATTCTGACAGTTGATTTCTGATCTGTACCACTGATTTGCTTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAATTCTGACAGTTGATTTCTGATCTGTACCACTGATTTGCTTT  943

seq1  GAATGAATTTCCTTTGCTCATTTAGCAAATCCATCTGATCCTTATTTCAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTTCCTTTGCTCATTTAGCAAATCCATCTGATCCTTATTTCAA  993

seq1  TACTCTCAAGGGGAGGCCAAGAGCCTGGACACAGCCATCCCAGACCCTGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCAAGGGGAGGCCAAGAGCCTGGACACAGCCATCCCAGACCCTGA  1043

seq1  CCCCCGATAACATATACAAATGAGAAAACAAGATCTTTCCTTTCTCAAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGATAACATATACAAATGAGAAAACAAGATCTTTCCTTTCTCAAGG  1093

seq1  ATCTGGAATTC  1100
      |||||||||||
seq2  ATCTGGAATTC  1104


seq1: chr1_160043657_160044678
seq2: B6Ng01-182A12.g_65_1105

seq1  GAATTCTATGGGATATTAGAAAGCCTCCACACTCCTGGAAGTTGAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGATATTAGAAAGCCTCCACACTCCTGGAAGTTGAACAAT  50

seq1  GTTCTACTCAATGATCTCTGGGTCACTTTCTAGAATTCAATGAAAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTCAATGATCTCTGGGTCACTTTCTAGAATTCAATGAAAACTAA  100

seq1  ATAGCTAAGAAACTAAATAACTTTAAAAATTACTAAAAATATATTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAGAAACTAAATAACTTTAAAAATTACTAAAAATATATTGTTTT  150

seq1  AAGAAATATCTGGTTTTGTTTTTGTATTTTTTTCTTTTACCCAAGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCTGGTTTTGTTTTTGTATTTTTTTCTTTTACCCAAGCAGTC  200

seq1  CACTGCACAATTCAGAGACATCTTGCAACCAGAGCAGAAGCTGATTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACAATTCAGAGACATCTTGCAACCAGAGCAGAAGCTGATTAATC  250

seq1  CAGAAACAGCAGCCTAGCATTACTGATGGCTTAAGGAGAAGTAAATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAGCAGCCTAGCATTACTGATGGCTTAAGGAGAAGTAAATGTGG  300

seq1  CAGGCAGCTTTCCAGGTGCTTCCATTGCCAGGGGCACTGTTGGTGATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTTTCCAGGTGCTTCCATTGCCAGGGGCACTGTTGGTGATGTC  350

seq1  TGCATAAATTTTTGTGTAAGTTAGGGTAGCAACAGGTAACCAGTGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATTTTTGTGTAAGTTAGGGTAGCAACAGGTAACCAGTGAGCTG  400

seq1  AAAACTAAGAAGGTTTCCAGAGAATCATGGTATTTTCTGACATTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAGAAGGTTTCCAGAGAATCATGGTATTTTCTGACATTTTTTTT  450

seq1  TCCTGCACACATAGCCTGACAAAGATGTTTTATTGTTAGTTGTAATGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACACATAGCCTGACAAAGATGTTTTATTGTTAGTTGTAATGGTC  500

seq1  TCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGCCTCTC  550

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACATACAC  600

seq1  ATACATACACACACACTCCTATACCTGAAAGCCATTTGACTTTGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACACACACTCCTATACCTGAAAGCCATTTGACTTTGCTGAAA  650

seq1  GCTATATAAAATCTCTGGATCCGGTGTTGCAATACTTTGGCATGTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAAAATCTCTGGATCCGGTGTTGCAATACTTTGGCATGTCCTAG  700

seq1  CAGTCCTAGCAGAAACAGAACGGCCCAATTTAGAAAGGATTGCAAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTAGCAGAAACAGAACGGCCCAATTTAGAAAGGATTGCAAGGTAA  750

seq1  GCAAAATATAAGAATTGAGGCTTCTGCTCATCCAAAGCTACAGGATCTCC  800
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GCAAAATATAAGATTTGA-GCTTCTGCTCATCCAAAGCTACAGGATCTCC  799

seq1  ATGACACAGGGCAACAAC-AAGATAATGGGGAGGAGGCCCCTTGAGGATA  849
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  ATGACACAGGGCAACAACAAAGATAATGGGGAGGAGCCCCCTTGAGGATA  849

seq1  CAG-TATTGATGA-TGTCACAGAAGCTAGAGATCTCAAG-CCAGACTAAT  896
      ||| ||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CAGTTATTGATGATTGTCACAGAAGCTAGAGATCTCAAGCCCAGACTAAT  899

seq1  GAATCA-TTGCAATGACCA-TTTGT-AAGTTAAGATGTG--TGGGCAGA-  940
      |||||| |||||||||||| ||||| |||||||||||||   ||||||| 
seq2  GAATCATTTGCAATGACCATTTTGTAAAGTTAAGATGTGGTGGGGCAGAA  949

seq1  -GGGATATAGT-GTGGG--ACACACTGTGACATACTACTATATTTTAC-T  985
       || ||||||| |||||  |||||||||||| | |||||||  ||||| |
seq2  GGGAATATAGTGGTGGGGAACACACTGTGAC-TTCTACTATTATTTACTT  998

seq1  ACATGAG-ACACATTT-CTATTCTTTACT----TTTGTTTGTT  1022
      ||||||| |||||||| | |||||| |||    || |||||||
seq2  ACATGAGAACACATTTCCAATTCTTAACTTTGATTGGTTTGTT  1041


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