BAC Information

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BAC

Clone NameB6Ng01-182D20
Chromosome1 (Build37)
Map Location 110,134,296 - 110,285,791
singlet/doubletdoublet
Overlap geneLOC435640
Upstream geneSerpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneEG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182D20.bB6Ng01-182D20.g
ACCGA008188GA008189
length1,101630
definitionB6Ng01-182D20.b B6Ng01-182D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,134,296 - 110,135,268)(110,285,222 - 110,285,791)
sequence
gaattcccccgagtttgttgtaaaaaacgaaatcagcaaatggggaataa
taatatatttaaatacagtaaataaagtaattcaacccttgagtgattta
cagcctggacttcctttaccttcattgttacagagatcatgaactaaaat
aattgaattgaatgattgctttttcaccacacccttgcatgagcaggata
ggaaaaactttgctttttcagtacctactctaaacaacaatcacccaata
aaagatattactggaaagtactttcataagaaatgataaataatccaaaa
ttgtgtctatattttatccaacaaactttagaaataatttgtagcaattt
cctctacctatcatttaccattttattgccagattctgacaaagatgctt
tagagaatatgtttacagtaaaacaaagtcttctatcattataggcatta
cagattcctccagaaaaaaaaatacaacgaggagattcacttagttgttt
gggctataaaatcagtcaattaaaaagtttgtccacaaaaggtacagatt
tgtataaacaaactcttgacaattttcaaaactaatttggagatattaac
tggctctggcccataagttgattaagtatatttgagttaagaaacttgtt
ccatgttgcaatatgtattaataataataaaaaaaacccatcatgttccc
acacttgtgcaggtcattttctgacccagtgggctggctggccatgtact
gatcgacctgcttttatcttgtggagagtctgactcagaactccacaatc
tctccacccagcttgctaggttcccacaagtgggttgttaccatgccacc
ccatggccgttgtggtgcacatttggaaaacccaagctttggggatgtac
ctttctctcttacaaatgttgagattatgtcattatggttgatcatgaga
ctggtaaagagcttgtagtactacttggatgaacatacaatatgaaaaca
acatatagagttttaaaagacaattgatctcatatattgtgaaggaatac
gaatcaaaggccaccactatcctactgatgcaaatagatgagatggcagg
t
gaattccctaaacatttctaatcttatttcatactatattatatactgga
gagctttggcttaaattcttgcaactgaaaacttttcttctgagtcaggt
agaaacactgtcagtctttctctatgggaattggtcaggaaaagtgccat
tttccaaacctaagaatgattataaaatcctatcaataccccaaatcact
agttatatgttattccatggaaacaacaatagacagctggctttcaaatg
ggtttttgtgtatatatatatatatatatatatatatatatatatatata
tatgctgataacatttggaattatctctgaggaagaaccagatgtgtagt
ggggcccagagaatcatgagtggcgtctcagaagtcaagcactgaacatt
ttacagttacatttgttcctgcttttatttgactgtgactatgccctgaa
tcttccgtcctatattaaaaaaattaaaactatgcaacatttttttaaag
gtgcatgcagtagggacagtggatattttagaaaaattttaaacttttaa
gtgtcttttaattactttagagaagttagaagcttgaatattttggataa
ttttaaaccactgacattttgacagtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_110134296_110135268
seq2: B6Ng01-182D20.b_194_1141

seq1  TGAATTGAATGATTGCTTTTTCACCACACCCTTGCATGAGCAGGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAATGATTGCTTTTTCACCACACCCTTGCATGAGCAGGATAGGA  50

seq1  AAAACTTTGCTTTTTCAGTACCTACTCTAAACAACAATCACCCAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTGCTTTTTCAGTACCTACTCTAAACAACAATCACCCAATAAAA  100

seq1  GATATTACTGGAAAGTACTTTCATAAGAAATGATAAATAATCCAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACTGGAAAGTACTTTCATAAGAAATGATAAATAATCCAAAATTG  150

seq1  TGTCTATATTTTATCCAACAAACTTTAGAAATAATTTGTAGCAATTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATTTTATCCAACAAACTTTAGAAATAATTTGTAGCAATTTCCT  200

seq1  CTACCTATCATTTACCATTTTATTGCCAGATTCTGACAAAGATGCTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTATCATTTACCATTTTATTGCCAGATTCTGACAAAGATGCTTTAG  250

seq1  AGAATATGTTTACAGTAAAACAAAGTCTTCTATCATTATAGGCATTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTTTACAGTAAAACAAAGTCTTCTATCATTATAGGCATTACAG  300

seq1  ATTCCTCCAGAAAAAAAAATACAACGAGGAGATTCACTTAGTTGTTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCAGAAAAAAAAATACAACGAGGAGATTCACTTAGTTGTTTGGG  350

seq1  CTATAAAATCAGTCAATTAAAAAGTTTGTCCACAAAAGGTACAGATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATCAGTCAATTAAAAAGTTTGTCCACAAAAGGTACAGATTTGT  400

seq1  ATAAACAAACTCTTGACAATTTTCAAAACTAATTTGGAGATATTAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAACTCTTGACAATTTTCAAAACTAATTTGGAGATATTAACTGG  450

seq1  CTCTGGCCCATAAGTTGATTAAGTATATTTGAGTTAAGAAACTTGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCATAAGTTGATTAAGTATATTTGAGTTAAGAAACTTGTTCCA  500

seq1  TGTTGCAATATGTATTAATAATAATAAAAAAAACCCATCATGTTCCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAATATGTATTAATAATAATAAAAAAAACCCATCATGTTCCCACA  550

seq1  CTTGTGCAGGTCATTTTCTGACCCAGTGGGCTGGCTGGCCATGTACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAGGTCATTTTCTGACCCAGTGGGCTGGCTGGCCATGTACTGAT  600

seq1  CGACCTGCTTTTATCTTGTGGAGAGTCTGACTCAGAACTCCACAATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTGCTTTTATCTTGTGGAGAGTCTGACTCAGAACTCCACAATCTCT  650

seq1  CCACCCAGCTTGCTAGGTTCCCACAAGTGGGTTGTTACCATGCCACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGCTTGCTAGGTTCCCACAAGTGGGTTGTTACCATGCCACCCCA  700

seq1  TGGCCGTTGTGGTGCACATTTGGAAAACCCAAGCTTTGGGGATGTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTTGTGGTGCACATTTGGAAAACCCAAGCTTTGGGGATGTACCTT  750

seq1  TCTCTCTTACAAATGTTGAGATTATGTCATTATGGTTGATCAATGAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TCTCTCTTACAAATGTTGAGATTATGTCATTATGGTTGATC-ATG-AGAC  798

seq1  TGGTAAAGAGCTTGTAGTAACTACTTGGATGAAATTAATAACAAATAATT  850
      |||||||||||||||||| ||||||||||||        |||| | ||| 
seq2  TGGTAAAGAGCTTGTAGT-ACTACTTGGATG--------AACATACAATA  839

seq1  GAAAAACAAACATATAGAGTTTTTAAAAAGAACAAATTGGATTCTTCCAT  900
        ||||| |||||||||||||||  ||||||   |||||   |||  |||
seq2  TGAAAAC-AACATATAGAGTTTT--AAAAGA--CAATTG--ATCT--CAT  880

seq1  ATATTGTGAAAAGAATACGATTCAAAAGGCACCAACATATTCTACTGATG  950
      |||||||| || |||||||| ||||| | |||||   ||| |||||||||
seq2  ATATTGTG-AAGGAATACGAATCAAAGGCCACCA--CTATCCTACTGATG  927

seq1  CAAATAGGATGAGGATGGCAGGT  973
      |||||| ||||| ||||||||||
seq2  CAAATA-GATGA-GATGGCAGGT  948

seq1: chr1_110285222_110285791
seq2: B6Ng01-182D20.g_63_633 (reverse)

seq1  TCTAAAGTAATT-AAAGACACTTAAAAGTTTAAAATTTTTCTAAAATATC  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTAATTAAAAGACACTTAAAAGTTTAAAATTTTTCTAAAATATC  50

seq1  CACTGTCCCTACTGCATGCACCTTTAAAAAAATGTTGCATAGTTTTAATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCTACTGCATGCACCTTTAAAAAAATGTTGCATAGTTTTAATT  100

seq1  TTTTTAATATAGGACGGAAGATTCAGGGCATAGTCACAGTCAAATAAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATAGGACGGAAGATTCAGGGCATAGTCACAGTCAAATAAAAG  150

seq1  CAGGAACAAATGTAACTGTAAAATGTTCAGTGCTTGACTTCTGAGACGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAAATGTAACTGTAAAATGTTCAGTGCTTGACTTCTGAGACGCC  200

seq1  ACTCATGATTCTCTGGGCCCCACTACACATCTGGTTCTTCCTCAGAGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGATTCTCTGGGCCCCACTACACATCTGGTTCTTCCTCAGAGATA  250

seq1  ATTCCAAATGTTATCAGCATATATATATATATATATATATATATATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAATGTTATCAGCATATATATATATATATATATATATATATATAT  300

seq1  ATATATATATACACAAAAACCCATTTGAAAGCCAGCTGTCTATTGTTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATACACAAAAACCCATTTGAAAGCCAGCTGTCTATTGTTGTT  350

seq1  TCCATGGAATAACATATAACTAGTGATTTGGGGTATTGATAGGATTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAATAACATATAACTAGTGATTTGGGGTATTGATAGGATTTTAT  400

seq1  AATCATTCTTAGGTTTGGAAAATGGCACTTTTCCTGACCAATTCCCATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTTAGGTTTGGAAAATGGCACTTTTCCTGACCAATTCCCATAG  450

seq1  AGAAAGACTGACAGTGTTTCTACCTGACTCAGAAGAAAAGTTTTCAGTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACTGACAGTGTTTCTACCTGACTCAGAAGAAAAGTTTTCAGTTG  500

seq1  CAAGAATTTAAGCCAAAGCTCTCCAGTATATAATATAGTATGAAATAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTAAGCCAAAGCTCTCCAGTATATAATATAGTATGAAATAAGA  550

seq1  TTAGAAATGTTTAGGGAATTC  570
      |||||||||||||||||||||
seq2  TTAGAAATGTTTAGGGAATTC  571