BAC Information

Click to search

BAC

Clone NameB6Ng01-182I02
Chromosome11 (Build37)1 (Build37)
Map Location 91,485,504 - 91,486,02158,953,523 - 58,953,584
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976, Kif2b
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182I02.bB6Ng01-182I02.g
ACCGA008375GA008376
length766951
definitionB6Ng01-182I02.b B6Ng01-182I02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,485,504 - 91,486,021)(58,953,523 - 58,953,584)
sequence
gaattccagaaaaatcaaataaccctattgaaaatggggtacagagctaa
acaaattctcaaatgaggaatacagaatgtaagagaaacaaaaagatgtt
caacatccttaatcatcagggagatacaaatcaaaacaaccctgagattc
cacctcacaccagtcagaatggctgagatcaaaaattcaggtgacagtag
atgctggcggggatgtggagaaagaggaacactcctccattattggtgag
atttcaagctggtacaaccactctggaaatcagtctcgtggttcctcaga
aaattggacatagtactacaggaagatccagcaatacctctcctgggcat
atacccagaagatgttccaacttgtaataaggacacacactccactatgt
tcatagcagcctaatttataatagccagaagctggaatctctcacctccc
aggtctctggttcattctagggcatttttgaaacatcctatttcctgagt
ttgcctattttcattctttctgctggccctcaagacttcagtcttttttc
ccttatccaataccagatcagaatccatcccccactctacccctttccac
tttccctcccatgttctgtcttccctcacaacttgtggttgctttcttct
ccctcccaattgggactgaggcgccttcacttgggaacttcagcttgttg
agctcttttagttctgttgactgtatcctgtgtattctgtaatttttttt
gttttttgtttggttt
gaattcaagaagctagactcaagaaaaacaaacaccctaacgaaaaatgg
gctctagagctaaacaaaattctcaattgaggaatctctaaagcctgaga
agtacctaaagaaatgttcaacatcctcattcatagtgaaatacaaatca
aaaccaagctgagattccatcttataccaatcagaatggttaagaccaaa
atgtcaggtgacaatagctgctagagcaaatgtagataaaaagaacactt
tatcgttgctggtgggattgcaaagtgttttccagattccataatctgga
aaacaatctggcatttctttacaaatttggaaataagactatctgaatat
ccatatatataacttctgggcatataccccaaaatgctccaccatatcat
aagtaaatcttcggtgtttaaagcagccttaattataatagctgaatgct
ggaaacaacccagatgtccttcaaccgaaaaatagatacagaaaatgtgg
tacatttacccagtgaaagactactcaagaggcatgcagatttctgagtt
caagggcagcctggtctacagagtgatttccaggacagccagggctatac
agggagatcctgtcccgaaaaaacaaaacaaatcaaaacaaaacaaaaca
aaaacaaaaacaaaaacaaaaaacaaaaaacaaaaaaggccactcagcta
ttcaaaatgaggatatcggatttgtttttgtttgtttgtttgtttgtttg
tttgtttttcaggaaaatgcctggaactagaaactatcatcctgagtgaa
gtaacccagacaccaaaggagatatgtatgaatatatggtatgtactcac
tgataagtggaatattaccccaaaaagttaagaataatccatgaagaatc
ccacagacccatatgaagctttaggaagaggggaaagccccaaatgtgga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_91485504_91486021
seq2: B6Ng01-182I02.b_454_805 (reverse)

seq1  AAACCAAACAAAAAACAAAAAAACAGACCTCTTCAGTGAGAAT--CCAGG  48
      |||||||||||||||||||||||   ||          |||||   ||||
seq2  AAACCAAACAAAAAACAAAAAAAATTAC----------AGAATACACAGG  40

seq1  ATATCGTAAAAGGAATTAACAGAAGATATTAGACTCAGGAAGTAAAATCC  98
      |||  || ||  ||| ||| |||          ||||  |||        
seq2  ATACAGTCAACAGAACTAAAAGA---------GCTCAACAAG--------  73

seq1  ATGCTCCTGGA-TTAGCAGGCTTAATATTGTAAATAGCACCTACTAAAAT  147
            ||| | ||  ||        | ||   |  || |||        
seq2  ------CTGAAGTTCCCA--------AGTG---AAGGCGCCT--------  98

seq1  TAATATTTATATTTAATATAGTACCTGACGTAATAATATCATATTTCAAG  197
                         ||| ||         |||      |   | |
seq2  ------------------CAGTCCC---------AAT------TGGGAGG  115

seq1  GCTTAGAAATACAATCCAAAAATTGTATAGGTAACCAAAAACAACCAGAG  247
      |   |||||  ||| ||| || ||||  ||| ||   | ||||       
seq2  GAGAAGAAA-GCAA-CCACAAGTTGT-GAGGGAAGACAGAACA-------  155

seq1  ATGTAGGCTTAGATTTTTAAAAAAACTATTTTTAATAAGGGTTCTTAAAT  297
        | |||    ||   |  |||    ||     | |  |||       ||
seq2  TGGGAGG----GAAAGTGGAAAGGGGTA----GAGTGGGGG-------AT  190

seq1  GCTTTGACACCCTCTTTCCAGTCTACCATCCAAAGGTAAGGGACTAAAGT  347
      |    ||        |||   |||   ||     | |||||||  |||| 
seq2  G----GA--------TTCTGATCTGGTAT---TGGATAAGGGAAAAAAGA  225

seq1  TGGTAATAGGATAAGGGGATGTAGACCTGTTTAGAAGTAGTTTTTTGAGA  397
        | | |    | ||||   | |||         |||            |
seq2  CTGAAGT--CTTGAGGGCCAGCAGA---------AAG-----------AA  253

seq1  TGATTCTAATCTCTAAATGTCAGGATAACAGCA-GTCCAGTTCAATAGAG  446
      |||   ||  |    ||  |||||| || || | ||    ||||| |  |
seq2  TGAAAATAGGC----AAACTCAGGA-AATAGGATGT----TTCAAAAATG  294

seq1  TCTGGGTGCTAAACACAAAACAGTTGTTGTTGAGGGGCATCTGAGTTCTT  496
       |   |    || || | | |  | |  | |||| |             |
seq2  CCCTAGAATGAACCAGAGACC--TGGGAGGTGAGAG------------AT  330

seq1  TCCAGCTTCTGGCTATTATAAA  518
      ||||||||||||||||||||||
seq2  TCCAGCTTCTGGCTATTATAAA  352

seq1: chr1_58953523_58953584
seq2: B6Ng01-182I02.g_591_652

seq1  GCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGG  50
      |||||||||||||||||||| |||||||||||||||||||| ||||||| 
seq2  GCAGATTTCTGAGTTCAAGGGCAGCCTGGTCTACAGAGTGATTTCCAGGA  50

seq1  CAGCCAGGGCTA  62
      ||||||||||||
seq2  CAGCCAGGGCTA  62