BAC Information

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BAC

Clone NameB6Ng01-183F17
Chromosome1 (Build37)
Map Location 135,805,784 - 136,002,937
singlet/doubletdoublet
Overlap genePrelp, LOC100042352, LOC100042358, Fmod, Btg2
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc
Downstream geneEG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183F17.bB6Ng01-183F17.g
ACCGA009002GA009003
length8561,106
definitionB6Ng01-183F17.b B6Ng01-183F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,002,082 - 136,002,937)(135,805,784 - 135,806,909)
sequence
gaattcctcttcaaaatggggcatgggcaggaacctatagaacaagaggt
cattgaaccataaccctgtggaagaaaagccctggaggaagtcctgacca
gggtcaggtgttggagaggatcagtccagtggcctccagaggaggtgatg
taacccagaccttcaccctttaccctgtgtccaagcaggtgacaggagat
ggctacactattactcctgtccttcagggtctggtggctcacatggtagg
cctgataattcagggctttacagtttgccataattttgaacataaactga
ttttgcaaggaagagcagaaaggtgagctcagagaaacttgtgtaaacaa
ccagtgcactgcccacacctgtagatttaaattctcaggtcgagcctaaa
ctagttccttaagtggcctctgcccctccctctgctgtcccaacttcctg
aggaacagcaggtcgggtcttggcttaataactctgtagcttgttttgtt
tccaccttcagattacactacctggctaacatctacaggcttggctctca
ggcaaccacatatgcaggagacaggtgtacaacagactgctactgtaatc
ccgtgtggtgagtgtgcaaatatgtctaaaaggctggtgtagggagagtg
tataagtgtgtgcacacaggctgggtgctggggatgaaaccctgagacta
caccctgtcctacatcatagcctggggtgctgggcatttgtcagcttagg
gcatccattcttcccagggaggcccagcaaggcagagggaagggcttcca
ggagggtcacttcacacatgagaggtgtgtgatgtgtgtgggagatcggg
gaaagg
gaattccttcctggggcctgcctggcacacaccaggcaggtagggctggc
cgagggcatctgttagttttcatcctccacaagacagcctaggttaggcg
ggttgagaatccccctcggtagccaaatcccctctaaagagagccctggc
aactactcttgtccttttgaacttgtgcgtggcctgtagatctttccaga
tgatttagtccttggctgcttgccctgggcacttcctgtgcaccctgtat
ttctccaattagttagaaaagatgactcttcctgcagtgccttggtgctg
cgcactgagaaaccctccacagtttgacattggtggtttcaaagaacatg
gctgctttgatttcaagtggagctattagatttctggactgactttaggg
atacttttttattttttacatgaaggttatgagttttgaggatattgtct
aagaagaggctttgcgacatttcttttagaagtttttttcttctttcttt
tccttcccttcccttttttcttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttccttcttccttccttccttcct
tccttccttccttccttcctttctgaaacaagatcttactatgtagcctt
gactggtctcaaactcctagaggtttgcctgtctttgccatctgagtgct
gggatggcagccaccacccctggctgctaggagtttcttaataaggtatt
tggggggcttgaagccatgactcagaagctaggagcattcattacttact
cattcatttagaggactgggatttggttctcagcacacacacagaggctt
cttcaaccactcatcacctccagttctaggggatccagtggccaacttcc
taacctctgtggttcacaagccacaatggtggtgcacatacatacattgc
aagcctaagtgctcataccacacattttaaaccaccgttaagacagattt
ttttttctccttctatcttctcagcagcagatgggagctggaaaagacgc
ttaatatctcgctgctttgatctatcacgcagcttggctgggtttcatat
gacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136002082_136002937
seq2: B6Ng01-183F17.b_48_903 (reverse)

seq1  CCTTTCCCCGATCTCCCACACACATCACACACCTCTCATGTGTGAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCGATCTCCCACACACATCACACACCTCTCATGTGTGAAGTGA  50

seq1  CCCTCCTGGAAGCCCTTCCCTCTGCCTTGCTGGGCCTCCCTGGGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGAAGCCCTTCCCTCTGCCTTGCTGGGCCTCCCTGGGAAGAAT  100

seq1  GGATGCCCTAAGCTGACAAATGCCCAGCACCCCAGGCTATGATGTAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCTAAGCTGACAAATGCCCAGCACCCCAGGCTATGATGTAGGAC  150

seq1  AGGGTGTAGTCTCAGGGTTTCATCCCCAGCACCCAGCCTGTGTGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTAGTCTCAGGGTTTCATCCCCAGCACCCAGCCTGTGTGCACACA  200

seq1  CTTATACACTCTCCCTACACCAGCCTTTTAGACATATTTGCACACTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACACTCTCCCTACACCAGCCTTTTAGACATATTTGCACACTCACC  250

seq1  ACACGGGATTACAGTAGCAGTCTGTTGTACACCTGTCTCCTGCATATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGATTACAGTAGCAGTCTGTTGTACACCTGTCTCCTGCATATGTG  300

seq1  GTTGCCTGAGAGCCAAGCCTGTAGATGTTAGCCAGGTAGTGTAATCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGAGAGCCAAGCCTGTAGATGTTAGCCAGGTAGTGTAATCTGAA  350

seq1  GGTGGAAACAAAACAAGCTACAGAGTTATTAAGCCAAGACCCGACCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAACAAAACAAGCTACAGAGTTATTAAGCCAAGACCCGACCTGCT  400

seq1  GTTCCTCAGGAAGTTGGGACAGCAGAGGGAGGGGCAGAGGCCACTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAGGAAGTTGGGACAGCAGAGGGAGGGGCAGAGGCCACTTAAGG  450

seq1  AACTAGTTTAGGCTCGACCTGAGAATTTAAATCTACAGGTGTGGGCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTTAGGCTCGACCTGAGAATTTAAATCTACAGGTGTGGGCAGTG  500

seq1  CACTGGTTGTTTACACAAGTTTCTCTGAGCTCACCTTTCTGCTCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTGTTTACACAAGTTTCTCTGAGCTCACCTTTCTGCTCTTCCTT  550

seq1  GCAAAATCAGTTTATGTTCAAAATTATGGCAAACTGTAAAGCCCTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCAGTTTATGTTCAAAATTATGGCAAACTGTAAAGCCCTGAATT  600

seq1  ATCAGGCCTACCATGTGAGCCACCAGACCCTGAAGGACAGGAGTAATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTACCATGTGAGCCACCAGACCCTGAAGGACAGGAGTAATAGT  650

seq1  GTAGCCATCTCCTGTCACCTGCTTGGACACAGGGTAAAGGGTGAAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATCTCCTGTCACCTGCTTGGACACAGGGTAAAGGGTGAAGGTCT  700

seq1  GGGTTACATCACCTCCTCTGGAGGCCACTGGACTGATCCTCTCCAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACATCACCTCCTCTGGAGGCCACTGGACTGATCCTCTCCAACACC  750

seq1  TGACCCTGGTCAGGACTTCCTCCAGGGCTTTTCTTCCACAGGGTTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGGTCAGGACTTCCTCCAGGGCTTTTCTTCCACAGGGTTATGGT  800

seq1  TCAATGACCTCTTGTTCTATAGGTTCCTGCCCATGCCCCATTTTGAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCTCTTGTTCTATAGGTTCCTGCCCATGCCCCATTTTGAAGAG  850

seq1  GAATTC  856
      ||||||
seq2  GAATTC  856

seq1: chr1_135805784_135806909
seq2: B6Ng01-183F17.g_66_1171

seq1  GAATTCCTTCCTGGGGCCTGCCTGGCACACACCAGGCAGGTAGGGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGGGGCCTGCCTGGCACACACCAGGCAGGTAGGGCTGGC  50

seq1  CGAGGGCATCTGTTAGTTTTCATCCTCCACAAGACAGCCTAGGTTAGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCATCTGTTAGTTTTCATCCTCCACAAGACAGCCTAGGTTAGGCG  100

seq1  GGTTGAGAATCCCCCTCGGTAGCCAAATCCCCTCTAAAGAGAGCCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAATCCCCCTCGGTAGCCAAATCCCCTCTAAAGAGAGCCCTGGC  150

seq1  AACTACTCTTGTCCTTTTGAACTTGTGCGTGGCCTGTAGATCTTTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCTTGTCCTTTTGAACTTGTGCGTGGCCTGTAGATCTTTCCAGA  200

seq1  TGATTTAGTCCTTGGCTGCTTGCCCTGGGCACTTCCTGTGCACCCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGTCCTTGGCTGCTTGCCCTGGGCACTTCCTGTGCACCCTGTAT  250

seq1  TTCTCCAATTAGTTAGAAAAGATGACTCTTCCTGCAGTGCCTTGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAATTAGTTAGAAAAGATGACTCTTCCTGCAGTGCCTTGGTGCTG  300

seq1  CGCACTGAGAAACCCTCCACAGTTTGACATTGGTGGTTTCAAAGAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGAGAAACCCTCCACAGTTTGACATTGGTGGTTTCAAAGAACATG  350

seq1  GCTGCTTTGATTTCAAGTGGAGCTATTAGATTTCTGGACTGACTTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTGATTTCAAGTGGAGCTATTAGATTTCTGGACTGACTTTAGGG  400

seq1  ATACTTTTTTATTTTTTACATGAAGGTTATGAGTTTTGAGGATATTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTTTATTTTTTACATGAAGGTTATGAGTTTTGAGGATATTGTCT  450

seq1  AAGAAGAGGCTTTGCGACATTTCTTTTAGAAGTTTTTTTCTTCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGCTTTGCGACATTTCTTTTAGAAGTTTTTTTCTTCTTTCTTT  500

seq1  TCCTTCCCTTCCCTTTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  550
      ||||||||||||||||||||    ||||||||||||||||||||||||||
seq2  TCCTTCCCTTCCCTTTTTTC----TTCTTTCTTTCTTTCTTTCTTTCTTT  546

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTCCTTCCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTCCTTCCTTCCT  596

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTTCTGAAACAAGATCTTACTATGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTTCTGAAACAAGATCTTACTATGTAG  646

seq1  CCTTGACTGGTCTCAAACTCCTAGAGGTTTGCCTGTCTTTGCCATCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTGGTCTCAAACTCCTAGAGGTTTGCCTGTCTTTGCCATCTGAG  696

seq1  TGCTGGGATGGCAGCCACCACCCCTGGCTGCTAGGAGTTTCTTAATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATGGCAGCCACCACCCCTGGCTGCTAGGAGTTTCTTAATAAGG  746

seq1  TATTTGGGGGGCTTGAAGCCATGACTCAGAAGCTAGGAGCATTCATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGGGGCTTGAAGCCATGACTCAGAAGCTAGGAGCATTCATTACT  796

seq1  TACTCATTCATTTAGAGGACTGGGATTTGGTTCTCAGCACACACACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTCATTTAGAGGACTGGGATTTGGTTCTCAGCACACACACAGAG  846

seq1  GCT--CTCAACCACTCATCA-CTCCAGTTCTAGGGGATCCAGT-GCCAAC  896
      |||   |||||||||||||| |||||||||||||||||||||| ||||||
seq2  GCTTCTTCAACCACTCATCACCTCCAGTTCTAGGGGATCCAGTGGCCAAC  896

seq1  TT-CTAACCTCTGTGG-TCACCAAGCACACATGTGGTGCACATACATACA  944
      || ||||||||||||| |||| |  ||||   ||||||||||||||||||
seq2  TTCCTAACCTCTGTGGTTCACAAGCCACAATGGTGGTGCACATACATACA  946

seq1  -TGC-AGGCTAAGTGCTCATACACACAAATTTAAAACACACCTTTTAAGA  992
       ||| || |||||||||||||| |||| |||| |||| ||||  ||||||
seq2  TTGCAAGCCTAAGTGCTCATAC-CACACATTTTAAAC-CACC-GTTAAGA  993

seq1  CAAATTTTTTTTTCTCTCTCCCTATCTTCTCAGCGAGCAGTAGGGAGCTG  1042
      || |||||||||||||  |  ||||||||||||| |||||  ||||||||
seq2  CAGATTTTTTTTTCTCCTT--CTATCTTCTCAGC-AGCAGATGGGAGCTG  1040

seq1  GAGAAAAGACGGCTTTAAGTAGTCCTGCTGCCTTTGACTCATTCACACAG  1092
        |||||||| ||||  | || ||  |||| |||||| ||  ||||    
seq2  --GAAAAGAC-GCTT--AATA-TCTCGCTG-CTTTGA-TCTATCAC----  1078

seq1  TCAGCTTTGTGCTGGGTGTTTTCCATATGACTTT  1126
       ||||||   ||||||    || |||||||||||
seq2  GCAGCTT--GGCTGGG----TTTCATATGACTTT  1106