BAC Information

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BAC

Clone NameB6Ng01-185I10
Chromosome1 (Build37)
Map Location 14,630,250 - 14,763,059
singlet/doubletdoublet
Overlap geneMsc
Upstream geneLactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneSmt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I10.bB6Ng01-185I10.g
ACCGA010611GA010612
length872436
definitionB6Ng01-185I10.b B6Ng01-185I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,630,250 - 14,631,108)(14,762,618 - 14,763,059)
sequence
gaattctaaagtttaagagagtcttcctaattaagcaacagctttatcag
ctgatgaatgagcaagctccttttagacatacacaaacagtaaagaagat
aagttattagtttgccgaaagttgaaatacagggtctagagtttaagtcc
tgctccacacaaggacactgcatctttccatatggtattataactgaacc
tggagccttacacaaataaggagggcatttgctttctattgttactgttt
tggtttttgtttgttcctttgttttgagatgaagtcttattttgtactcc
aggttggtcttgaagtcaagactttcttgcttctgcctactaagtgctga
gattacagatgtgtgccagaaaaagtgtgtgcaatatcatcctggtcact
gtaagttttctaattgacttttcttgctgtagtcaatttcatgttttcaa
aagtcattgccttgagtggctgggttatgagcaattaagtagcatttaat
gcagggctgttgatagacattctgttcttagcactgctgaatacactgaa
agtaagatttgctcatgctattgttttctattgtaagactggtatagatc
aaacagtcatctcttcatgtggctctcacaacatgtacacatttgtatct
aagctgcatgctgttcaaagatttgaaatctggtacacaagaggacattt
ttctgtttaagtttccacaaccccctgttgataatgttttctgactcagc
actaagcatttataaggttctaagataaaacgttttgggtacttagcaca
ctttatcaataggacattaagaaatatagggcacatgagggaggagggaa
agaaaaagaggggggagagaga
agagacgatgtcaccatcagtgagagatggcttgttcagctcttgctaga
ttttctaatactcttaatgagatccatgggggaaggaagaagtgtctttt
gcttgtgttagatcacatgcccttccctgggacagttctcaaaatcaggg
aaatgaaatgttctgcctagccaggaggaagtgatatcacccttgaggga
tagaaatggtccagcctgatctttagcaggcagagtggtgctttcatatt
ggatcccggagtgctgtttgcaccaaaagaattgaaggtactgagccttc
aaaaggcagtaaagagaaataacatatggcttcttcctcttctttctcct
gcctacctctacccctcccctcccccttcccctcctccttcccaacatct
cctcctcctcctctcctcctcttcctctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14630250_14631108
seq2: B6Ng01-185I10.b_41_912

seq1  GAATTCTAAAGTTTAAGAGAGTCTTCCTAATTAAGCAACAGCTTTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGTTTAAGAGAGTCTTCCTAATTAAGCAACAGCTTTATCAG  50

seq1  CTGATGAATGAGCAAGCTCCTTTTAGACATACACAAACAGTAAAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATGAGCAAGCTCCTTTTAGACATACACAAACAGTAAAGAAGAT  100

seq1  AAGTTATTAGTTTGCCGAAAGTTGAAATACAGGGTCTAGAGTTTAAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTAGTTTGCCGAAAGTTGAAATACAGGGTCTAGAGTTTAAGTCC  150

seq1  TGCTCCACACAAGGACACTGCATCTTTCCATATGGTATTATAACTGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACACAAGGACACTGCATCTTTCCATATGGTATTATAACTGAACC  200

seq1  TGGAGCCTTACACAAATAAGGAGGGCATTTGCTTTCTATTGTTACTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTTACACAAATAAGGAGGGCATTTGCTTTCTATTGTTACTGTTT  250

seq1  TGGTTTTTGTTTGTTCCTTTGTTTTGAGATGAAGTCTTATTTTGTACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGTTTGTTCCTTTGTTTTGAGATGAAGTCTTATTTTGTACTCC  300

seq1  AGGTTGGTCTTGAAGTCAAGACTTTCTTGCTTCTGCCTACTAAGTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTCTTGAAGTCAAGACTTTCTTGCTTCTGCCTACTAAGTGCTGA  350

seq1  GATTACAGATGTGTGCCAGAAAAAGTGTGTGCAATATCATCCTGGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGATGTGTGCCAGAAAAAGTGTGTGCAATATCATCCTGGTCACT  400

seq1  GTAAGTTTTCTAATTGACTTTTCTTGCTGTAGTCAATTTCATGTTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTTCTAATTGACTTTTCTTGCTGTAGTCAATTTCATGTTTTCAA  450

seq1  AAGTCATTGCCTTGAGTGGCTGGGTTATGAGCAATTAAGTAGCATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGCCTTGAGTGGCTGGGTTATGAGCAATTAAGTAGCATTTAAT  500

seq1  GCAGGGCTGTTGATAGACATTCTGTTCTTAGCACTGCTGAATACACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTGTTGATAGACATTCTGTTCTTAGCACTGCTGAATACACTGAA  550

seq1  AGTAAGATTTGCTCATGCTATTG-TTTCTATTGTAAGACTGGTATAGATC  599
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTAAGATTTGCTCATGCTATTGTTTTCTATTGTAAGACTGGTATAGATC  600

seq1  AAACAGTCATCTCTTCATGTGGCTCTCACAACATGTACACA-TTGTATCT  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACAGTCATCTCTTCATGTGGCTCTCACAACATGTACACATTTGTATCT  650

seq1  AAGCTGCATGCTGTTCAAAGA-TTGAAATCTGGTACACAAGAGGACA-TT  696
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  AAGCTGCATGCTGTTCAAAGATTTGAAATCTGGTACACAAGAGGACATTT  700

seq1  TTCTGTTTAAGTTTCCACAA-CCCCTGTTGATAATGTTTTCTGACTCAGC  745
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTGTTTAAGTTTCCACAACCCCCTGTTGATAATGTTTTCTGACTCAGC  750

seq1  ACTAAGCATTTATAAGGTTCTAAGATAAAACG-TTTGGGTAC-TAGCACA  793
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  ACTAAGCATTTATAAGGTTCTAAGATAAAACGTTTTGGGTACTTAGCACA  800

seq1  C-TTATCAATAGGACATTAAGAAATATAGGGCACATGA-GGAGGAGG--A  839
      | |||||||||||||||||||||||||||||||||||| ||||||||  |
seq2  CTTTATCAATAGGACATTAAGAAATATAGGGCACATGAGGGAGGAGGGAA  850

seq1  AG-AAAAGA-GGGGGAGAGAGA  859
      || |||||| ||||||||||||
seq2  AGAAAAAGAGGGGGGAGAGAGA  872

seq1: chr1_14762618_14763059
seq2: B6Ng01-185I10.g_69_510 (reverse)

seq1  GGAGGAGGAGAGGAAGAGGAGGAGAGGAGGAGGAGGAGATGTTGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGAGGAAGAGGAGGAGAGGAGGAGGAGGAGATGTTGGGAAGG  50

seq1  AGGAGGGGAAGGGGGAGGGGAGGGGTAGAGGTAGGCAGGAGAAAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGAAGGGGGAGGGGAGGGGTAGAGGTAGGCAGGAGAAAGAAGAG  100

seq1  GAAGAAGCCATATGTTATTTCTCTTTACTGCCTTTTGAAGGCTCAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCATATGTTATTTCTCTTTACTGCCTTTTGAAGGCTCAGTACC  150

seq1  TTCAATTCTTTTGGTGCAAACAGCACTCCGGGATCCAATATGAAAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTTTTGGTGCAAACAGCACTCCGGGATCCAATATGAAAGCACC  200

seq1  ACTCTGCCTGCTAAAGATCAGGCTGGACCATTTCTATCCCTCAAGGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTGCTAAAGATCAGGCTGGACCATTTCTATCCCTCAAGGGTGA  250

seq1  TATCACTTCCTCCTGGCTAGGCAGAACATTTCATTTCCCTGATTTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTCCTCCTGGCTAGGCAGAACATTTCATTTCCCTGATTTTGAGA  300

seq1  ACTGTCCCAGGGAAGGGCATGTGATCTAACACAAGCAAAAGACACTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCAGGGAAGGGCATGTGATCTAACACAAGCAAAAGACACTTCTT  350

seq1  CCTTCCCCCATGGATCTCATTAAGAGTATTAGAAAATCTAGCAAGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCATGGATCTCATTAAGAGTATTAGAAAATCTAGCAAGAGCTG  400

seq1  AACAAGCCATCTCTCACTGATGGTGACATCGTCTCTGAATTC  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCATCTCTCACTGATGGTGACATCGTCTCTGAATTC  442