BAC Information

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BAC

Clone NameB6Ng01-185I22
Chromosome1 (Build37)
Map Location 99,803,501 - 99,956,203
singlet/doubletdoublet
Overlap genePam, LOC100041823
Upstream geneSlco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I22.bB6Ng01-185I22.g
ACCGA010635GA010636
length1,1651,095
definitionB6Ng01-185I22.b B6Ng01-185I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,803,501 - 99,804,671)(99,955,106 - 99,956,203)
sequence
gaattcaagaaactggtaagaaacatgtatcaaatctaaatctctaattt
taatgtctatcaaacatatttccatagcaaagttctatttcttatagact
tcaaaggcattttctttatgaaatatcccaaagcaaaaataaaggactct
agctagaatggacaagtagccagtaatacttaaagacatccacttaagca
ggaagctagattctcttaatgggaagtaaatgcatgggatatgaggttat
ccatcccaaactatttagcttgcttttctaataatagcttgcaattcctg
cttggattcatagctaagcaatagcgtaagcatgcagaataatgcatgac
catagaccattccatctcagggtcttagaaggctgttggcttctcctagt
tttctctctagagagagctttcttttccatgagctcatcttgtcctggtt
gtttcctgcttcaataaaagaacaggtcaaccatagatccttagggagcc
agggtattgttacaaactatatcccactaattggaaaaagtccttcagaa
agccagcagaagagatttcaattccccatattccctttggaagggaaggg
aagagaggaagtacatccctttcttcctgtcttcagccacagtttggata
atggatactttccttttagagctatagaaagaaagggccaggaccattaa
caaatgttagaaaaacaaggtgacatcactaacaatgatacttgtgttag
aaagctaaaagttccaaattctatcatgtctacccaccctccctcccttc
caaaacgttctgaatagaaagaacccttttctgtcttgaacgcccaaaca
aaaatgaacaaaagatgtcacagcaagtgcaaataacaatacgtggatat
tttaaatatctcttatgttgtcttgatctttaccttacagctccttgttc
cttattactaatgttgaattaatgagacaggtgatgcttttctgagacaa
atcacagctccaagtgatcagaaatgagactagttgggaaaactttcaca
tatttaaaattcgttgaaatccttcagagattaagagttggaggtctcta
tacagagcacatccagtttcttttggccatttgcatgatgttgtccaatt
ggccatgcttttatt

gaattcctgtttctggtgtggtgtccacttttggcactgtggcttttcct
aagcataagcaattactctagacaggggcaaacaggaagagtgttgaaaa
tgtgagatgccttacccagctcctgtgcattctcagtttcttgctttggc
tgctgatttttttttctcattctttagataaaactcaaatcacttttggg
aattttggagaaatcgtgaggagagccgtcatttggagcttagtctaact
ccagtgttgagatgctcatttctcctgtacaatgaagactttaaaggtgt
ttgtcagagcaactcctgctgagctaatgtgtgtgcactgatatctctgg
gcattgttactatcagttttgtatcaggcttcctagctatttcctttgtg
tattagcaaaatgatttttcttaaaagttgcccttctgacaaagaaagaa
atctttgctccttgtagagagaactctaaatggaaggacctggaacatct
gtattcatggcaggctatagtgttgatgtcagagatgtctgctgattgac
cttcattcttgactgaacgtcgggaaaatatgcataattgggcctttgtc
cacaaacaaatagcaaatgtctctagtggaaacagagaactctatttcct
ctgctttgggtatggaaaaggaactctttcccagccctgttatcagaggg
tctaatgatttaattttcttgaaatcttccactttggcaagcaacttttt
attaatcctaatttattttgtttaatttatatttatagggtccagaggcc
aataatatcacacaggagaaatgccttttgttaaatgaccaaacacacct
ttgttgacacattggacatcaacaaaacattccgtggtctggtgatagat
tttggattaaggtatttgagagcgaccttgagctggctaccaggaatcca
atggaagtttaaagtcacctttcgattgagtcagttcagtgacaggagcc
caacagagcctgagccctctgaactgaagttgaactgtactgaccttcgt
ggagtcagtctcaggggctgttctgcatgcatactaggactagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99803501_99804671
seq2: B6Ng01-185I22.b_40_1204

seq1  GAATTCAAGAAACTGGTAAGAAACATGTATCAAATCTAAATCTCTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAACTGGTAAGAAACATGTATCAAATCTAAATCTCTAATTT  50

seq1  TAATGTCTATCAAACATATTTCCATAGCAAAGTTCTATTTCTTATAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTATCAAACATATTTCCATAGCAAAGTTCTATTTCTTATAGACT  100

seq1  TCAAAGGCATTTTCTTTATGAAATATCCCAAAGCAAAAATAAAGGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCATTTTCTTTATGAAATATCCCAAAGCAAAAATAAAGGACTCT  150

seq1  AGCTAGAATGGACAAGTAGCCAGTAATACTTAAAGACATCCACTTAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAATGGACAAGTAGCCAGTAATACTTAAAGACATCCACTTAAGCA  200

seq1  GGAAGCTAGATTCTCTTAATGGGAAGTAAATGCATGGGATATGAGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAGATTCTCTTAATGGGAAGTAAATGCATGGGATATGAGGTTAT  250

seq1  CCATCCCAAACTATTTAGCTTGCTTTTCTAATAATAGCTTGCAATTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAAACTATTTAGCTTGCTTTTCTAATAATAGCTTGCAATTCCTG  300

seq1  CTTGGATTCATAGCTAAGCAATAGCGTAAGCATGCAGAATAATGCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTCATAGCTAAGCAATAGCGTAAGCATGCAGAATAATGCATGAC  350

seq1  CATAGACCATTCCATCTCAGGGTCTTAGAAGGCTGTTGGCTTCTCCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCATTCCATCTCAGGGTCTTAGAAGGCTGTTGGCTTCTCCTAGT  400

seq1  TTTCTCTCTAGAGAGAGCTTTCTTTTCCATGAGCTCATCTTGTCCTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTAGAGAGAGCTTTCTTTTCCATGAGCTCATCTTGTCCTGGTT  450

seq1  GTTTCCTGCTTCAATAAAAGAACAGGTCAACCATAGATCCTTAGGGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCTTCAATAAAAGAACAGGTCAACCATAGATCCTTAGGGAGCC  500

seq1  AGGGTATTGTTACAAACTATATCCCACTAATTGGAAAAAGTCCTTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTGTTACAAACTATATCCCACTAATTGGAAAAAGTCCTTCAGAA  550

seq1  AGCCAGCAGAAGAGATTTCAATTCCCCATATTCCCTTTGGAAGGGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGAAGAGATTTCAATTCCCCATATTCCCTTTGGAAGGGAAGGG  600

seq1  AAGAGAGGAAGTACATCCCTTTCTTCCTGTCTTCAGCCACAGTTTGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAAGTACATCCCTTTCTTCCTGTCTTCAGCCACAGTTTGGATA  650

seq1  ATGGATACTTTCCTTTTAGAGCTATAGAAAGAAAGGGCCAGGACCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTTTCCTTTTAGAGCTATAGAAAGAAAGGGCCAGGACCATTAA  700

seq1  CAAATGTTAGAAAAACAAGGTGACATCACTAACAATGATACTTGTGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTAGAAAAACAAGGTGACATCACTAACAATGATACTTGTGTTAG  750

seq1  AAAGCTAAAAGTTCCAAATTCTATCATGTCTACCCACCCTCCCTCCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAAGTTCCAAATTCTATCATGTCTACCCACCCTCCCTCCCTTC  800

seq1  CAAAACGTTCTGAATAGAAAGAACCCTTTTCTGTCTTGAACGCCCAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTTCTGAATAGAAAGAACCCTTTTCTGTCTTGAACGCCCAAACA  850

seq1  AAAATGAACAAAAGATGTCACAGCAAGTGCAAATAACAATACGTGGATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACAAAAGATGTCACAGCAAGTGCAAATAACAATACGTGGATAT  900

seq1  TTTAAATATCTCTTATGTTGTCTTGATCTTTACCTTACAGCTCTTTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTAAATATCTCTTATGTTGTCTTGATCTTTACCTTACAGCTCCTTGTTC  950

seq1  CTTATTACTAATGTTGAATTAATGAGACAGGTGATGCTTTTCTGAGACAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTATTACTAATGTTGAATTAATGAGACAGGTGATGCTTTTCTGAGAC-A  999

seq1  AATCACAGCTCCCAAGGTGATCAGAAATGAGACTAGTTGGGAAAAC-TTC  1049
      ||||||||||||  | |||||||||||||||||||||||||||||| |||
seq2  AATCACAGCTCC--AAGTGATCAGAAATGAGACTAGTTGGGAAAACTTTC  1047

seq1  ACATAATTAAAATTCCTTTGAAAATCCCTTCAGAGAATAAAGAGT--GAG  1097
      ||||| |||||||| | ||||||   ||||||||| || ||||||  |||
seq2  ACATATTTAAAATT-CGTTGAAA--TCCTTCAGAG-ATTAAGAGTTGGAG  1093

seq1  GTCTCTATACAAGAGCACCATCCAGTTTCTTT--GGCATTGGAATAGAGT  1145
      |||||||||| |||||| ||||||||||||||  | |||| | || || |
seq2  GTCTCTATAC-AGAGCA-CATCCAGTTTCTTTTGGCCATTTGCAT-GA-T  1139

seq1  GTTGTCAATTGGGCCATGCTTTTATT  1171
      |||||| | | |||||||||||||||
seq2  GTTGTCCAATTGGCCATGCTTTTATT  1165


seq1: chr1_99955106_99956203
seq2: B6Ng01-185I22.g_63_1157 (reverse)

seq1  TCCTAGGTCTAGTATGCATGCAGGACAGCCCCTGAGGACTGACTTCACGA  50
      ||||||  ||||||||||||||| ||||||||||| |||||||| |||||
seq2  TCCTAGTCCTAGTATGCATGCAGAACAGCCCCTGA-GACTGACTCCACGA  49

seq1  AGGGTCAGTACAGTTCAAACTTCAGTTCAGAGGGCTCAGGCTCTGTTGGG  100
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  A-GGTCAGTACAGTTC-AACTTCAGTTCAGAGGGCTCAGGCTCTGTTGGG  97

seq1  CTCCTTGTCACTGAACTGACTCAATCG-AAGGTGACTTTAAAACTTCCAT  149
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CTCC-TGTCACTGAACTGACTCAATCGAAAGGTGACTTT-AAACTTCCAT  145

seq1  TGGATTCCTGGTAGCCAGCTCAAGGTCGCTCTCAAATACCTTAATCCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCCTGGTAGCCAGCTCAAGGTCGCTCTCAAATACCTTAATCCAAA  195

seq1  ATCTATCACCAGACCACGGAATGTTTTGTTGATGTCCAATGTGTCAACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCACCAGACCACGGAATGTTTTGTTGATGTCCAATGTGTCAACAA  245

seq1  AGGTGTGTTTGGTCATTTAACAAAAGGCATTTCTCCTGTGTGATATTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTTTGGTCATTTAACAAAAGGCATTTCTCCTGTGTGATATTATT  295

seq1  GGCCTCTGGA-CCTATAAATATAAATTAAACAAAATAAATTAGGATTAAT  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGACCCTATAAATATAAATTAAACAAAATAAATTAGGATTAAT  345

seq1  AAAAAGTTGCTTGCCAAAGTGGAAGATTTCAAGAAAATTAAATCATTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTGCTTGCCAAAGTGGAAGATTTCAAGAAAATTAAATCATTAGA  395

seq1  CCCTCTGATAACAGGGCTGGGAAAGAGTTCCTTTTCCATACCCAAAGCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGATAACAGGGCTGGGAAAGAGTTCCTTTTCCATACCCAAAGCAG  445

seq1  AGGAAATAGAGTTCTCTGTTTCCACTAGAGACATTTGCTATTTGTTTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGAGTTCTCTGTTTCCACTAGAGACATTTGCTATTTGTTTGTG  495

seq1  GACAAAGGCCCAATTATGCATATTTTCCCGACGTTCAGTCAAGAATGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCCCAATTATGCATATTTTCCCGACGTTCAGTCAAGAATGAAG  545

seq1  GTCAATCAGCAGACATCTCTGACATCAACACTATAGCCTGCCATGAATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCAGCAGACATCTCTGACATCAACACTATAGCCTGCCATGAATAC  595

seq1  AGATGTTCCAGGTCCTTCCATTTAGAGTTCTCTCTACAAGGAGCAAAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCAGGTCCTTCCATTTAGAGTTCTCTCTACAAGGAGCAAAGAT  645

seq1  TTCTTTCTTTGTCAGAAGGGCAACTTTTAAGAAAAATCATTTTGCTAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTGTCAGAAGGGCAACTTTTAAGAAAAATCATTTTGCTAATA  695

seq1  CACAAAGGAAATAGCTAGGAAGCCTGATACAAAACTGATAGTAACAATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGAAATAGCTAGGAAGCCTGATACAAAACTGATAGTAACAATGC  745

seq1  CCAGAGATATCAGTGCACACACATTAGCTCAGCAGGAGTTGCTCTGACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATATCAGTGCACACACATTAGCTCAGCAGGAGTTGCTCTGACAA  795

seq1  ACACCTTTAAAGTCTTCATTGTACAGGAGAAATGAGCATCTCAACACTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAAAGTCTTCATTGTACAGGAGAAATGAGCATCTCAACACTGG  845

seq1  AGTTAGACTAAGCTCCAAATGACGGCTCTCCTCACGATTTCTCCAAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGACTAAGCTCCAAATGACGGCTCTCCTCACGATTTCTCCAAAATT  895

seq1  CCCAAAAGTGATTTGAGTTTTATCTAAAGAATGAGAAAAAAAAATCAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGTGATTTGAGTTTTATCTAAAGAATGAGAAAAAAAAATCAGCA  945

seq1  GCCAAAGCAAGAAACTGAGAATGCACAGGAGCTGGGTAAGGCATCTCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCAAGAAACTGAGAATGCACAGGAGCTGGGTAAGGCATCTCACA  995

seq1  TTTTCAACACTCTTCCTGTTTGCCCCTGTCTAGAGTAATTGCTTATGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACACTCTTCCTGTTTGCCCCTGTCTAGAGTAATTGCTTATGCTT  1045

seq1  AGGAAAAGCCACAGTGCCAAAAGTGGACACCACACCAGAAACAGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCCACAGTGCCAAAAGTGGACACCACACCAGAAACAGGAATTC  1095


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