BAC Information

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BAC

Clone NameB6Ng01-186C05
Chromosome4 (Build37)1 (Build37)
Map Location 28,069,997 - 28,071,2143,278,377 - 3,278,606
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186C05.bB6Ng01-186C05.g
ACCGA011061GA011062
length1,224738
definitionB6Ng01-186C05.b B6Ng01-186C05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,069,997 - 28,071,214)(3,278,377 - 3,278,606)
sequence
gaattccatagtgtagtgatcaccacagtcacctaacaacttgaaatcaa
cactaataaataaatataagggctttcagttaaaaacaaaaaacaataat
ggtgaccaagcgtgaggagtagggaatcagcatctcaataaatttctgtg
ggacaaatattagaaaaatgacatcaaaaagaacaatagatcgcttagaa
aagtaagagctaactggagtctctcctctgagtatattctactaaatatt
tattataagcaacatgcttcaaaatttttcagaatttccataactcaaac
aataaccagtgccttataattagcagcaaagagtctgtgttctgggttgt
tataacatacagtcaatccattaggtgcacaacaccgtgtggtgtgaggc
gagaataattagacaccagatggtgataccagctccaatagcgaatgccg
atgcattatgcatgagaagtgactttagtgttgtttcttatccatttggt
agcattatgctgctcttggacctcaatccacgtctctaaaactttgtatc
tggcatttctgttttaacaaacggtaacatcaccttgtcctaagccaatc
agctgcatcttactctgcatgcagaacagacactcttccagcagtgccgc
ggagctgcatgtttgcattgtctttcagatctgaggttagtgagtaaaaa
attatgcctctgcagcagcataatgtttgagagtagtatctttaaaaatg
gaatcagatttttcatgattgtgtgtcacaattctgagctgaggtccttt
taaaatatcattagtggagatgtgattaatcatgttatgtcttctgaata
ctaaaaataccttttattttcattacagatgcaatgaatttgaaactaga
aatgagtgagagcatatagagattggatggtgataaatctcattaaagtt
attaattcttcaacagagagatcaaaagatctcttttgatttatttatct
tgatacttttaagaaatgacaacttttcaggtgaaggaagatgctgattc
caaagttatgataacgttgaccacccacagactgcgtaatgttgaactct
ggaatatctagtacttggatagaaaagacagtggaaggtttaggtaggtc
ctttttagtaggtaagatctaattggaatagaactgctgtacagtggatg
ttatcatgaaacaatcctgagtgg

gaattctcctgtatttgccattaaaaacaatctggaaattggaggatgtt
gtaagtgatctaatctattggcccattatagactgcaatcttgctacatt
ctctattaccaaaagcatgacatctaatggcaattgacttaaaagcctga
ttctttattattttccgacaaaagcaagatagaaaaattattgcttttat
aatacctacttgcaacaatgttcaacctataaaaagatggtagtggaaaa
ctcttcctcaagaaatgttaaataacccaactctatattactaatttgta
caacagacactagaaataatttataaacaatttcctaaatccataattaa
ccattatatggatgatatgttgttgtccaattcaatgaaaaggtattaga
aggaatgttttatgaatcaataaagaattttaactatttggggattagag
atggctctgaaaaaataaagaggagatcctatcaattttataggatttaa
attcagtcaataacatagtcaacagcaaaagatatagatcagaagagata
agttactcttaataatactcttagtgacttacacattattaggagatatt
aactggttatggcctactattggattaactatttaagagttgactaattt
ttggttgtgagcctagcctttaatggctgagacatctctccatcaaacaa
gtgaaagatctgtatggcaagaacgtcaagtctctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28069997_28071214
seq2: B6Ng01-186C05.b_44_1267

seq1  GAATTCCATAGTGTAGTGATCACCACAGTCACCTAACAACTTGAAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTGTAGTGATCACCACAGTCACCTAACAACTTGAAATCAA  50

seq1  CACTAATAAATAAATATAAGGGCTTTCAGTTAAAAACAAAAAACAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAATAAATATAAGGGCTTTCAGTTAAAAACAAAAAACAATAAT  100

seq1  GGTGACCAAGCGTGAGGAGTAGGGAATCAGCATCTCAATAAATTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAAGCGTGAGGAGTAGGGAATCAGCATCTCAATAAATTTCTGTG  150

seq1  GGACAAATATTAGAAAAATGACATCAAAAAGAACAATAGATCGCTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATATTAGAAAAATGACATCAAAAAGAACAATAGATCGCTTAGAA  200

seq1  AAGTAAGAGCTAACTGGAGTCTCTCCTCTGAGTATATTCTACTAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAGCTAACTGGAGTCTCTCCTCTGAGTATATTCTACTAAATATT  250

seq1  TATTATAAGCAACATGCTTCAAAATTTTTCAGAATTTCCATAACTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAGCAACATGCTTCAAAATTTTTCAGAATTTCCATAACTCAAAC  300

seq1  AATAACCAGTGCCTTATAATTAGCAGCAAAGAGTCTGTGTTCTGGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAGTGCCTTATAATTAGCAGCAAAGAGTCTGTGTTCTGGGTTGT  350

seq1  TATAACATACAGTCAATCCATTAGGTGCACAACACCGTGTGGTGTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATACAGTCAATCCATTAGGTGCACAACACCGTGTGGTGTGAGGC  400

seq1  GAGAATAATTAGACACCAGATGGTGATACCAGCTCCAATAGCGAATGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATTAGACACCAGATGGTGATACCAGCTCCAATAGCGAATGCCG  450

seq1  ATGCATTATGCATGAGAAGTGACTTTAGTGTTGTTTCTTATCCATTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATGCATGAGAAGTGACTTTAGTGTTGTTTCTTATCCATTTGGT  500

seq1  AGCATTATGCTGCTCTTGGACCTCAATCCACGTCTCTAAAACTTTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATGCTGCTCTTGGACCTCAATCCACGTCTCTAAAACTTTGTATC  550

seq1  TGGCATTTCTGTTTTAACAAACGGTAACATCACCTTGTCCTAAGCCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTCTGTTTTAACAAACGGTAACATCACCTTGTCCTAAGCCAATC  600

seq1  AGCTGCATCTTACTCTGCATGCAGAACAGACACTCTTCCAGCAGTGCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATCTTACTCTGCATGCAGAACAGACACTCTTCCAGCAGTGCCGC  650

seq1  GGAGCTGCATGTTTGCATTGTCTTTCAGATCTGAGGTTAGTGAGTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCATGTTTGCATTGTCTTTCAGATCTGAGGTTAGTGAGTAAAAA  700

seq1  ATTATGCCTCTGCAGCAGCATAATGTTTGAGAGTAGTATCTTTAAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCTCTGCAGCAGCATAATGTTTGAGAGTAGTATCTTTAAAAATG  750

seq1  GAATCAGATTTTTCATGATTGTGTGTCACAATTCTGAGCTGAGGTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGATTTTTCATGATTGTGTGTCACAATTCTGAGCTGAGGTCCTTT  800

seq1  TAAAATATCATTAGTGGAGATGTGATTAATCATGTTATGTCTTCTGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCATTAGTGGAGATGTGATTAATCATGTTATGTCTTCTGAATA  850

seq1  CTAAAAATACCTTTTATTTTCATTACAGATGCAATGAATTTGAAACTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATACCTTTTATTTTCATTACAGATGCAATGAATTTGAAACTAGA  900

seq1  AATGAGTGAGAGCATATAGAGATTGGATGGTGATAAATCTCATTAAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAGAGCATATAGAGATTGGATGGTGATAAATCTCATTAAAGTT  950

seq1  ATTAATTCTTCAACAGAGAGATCAAAAGATCTCTTTTGATTTATTTATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTTCAACAGAGAGATCAAAAGATCTCTTTTGATTTATTTATCT  1000

seq1  TGATACTTTTAAGAAAATGACAACTTTTCAGGGTGAAGGAAGATGCTGAT  1050
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TGATACTTTTAAG-AAATGACAACTTTTCA-GGTGAAGGAAGATGCTGAT  1048

seq1  TCCAAAGTTATGATACCG-TGACCA-CCACAGACTGCGTAATGTTGACCT  1098
      ||||||||||||||| || |||||| ||||||||||||||||||||| ||
seq2  TCCAAAGTTATGATAACGTTGACCACCCACAGACTGCGTAATGTTGAACT  1098

seq1  TTG--ATATCTAGTACTT-GATAG--AAGACAGT-GAAAGTTTA-GTA-G  1140
       ||  ||||||||||||| |||||  |||||||| ||| ||||| ||| |
seq2  CTGGAATATCTAGTACTTGGATAGAAAAGACAGTGGAAGGTTTAGGTAGG  1148

seq1  TTCTTTTTAGTAAGT-AGATCTAAT--GGATAGAATTGCTGTAACAGTGA  1187
      | |||||||||| || |||||||||  | |||||| |||||| |||||| 
seq2  TCCTTTTTAGTAGGTAAGATCTAATTGGAATAGAACTGCTGT-ACAGTG-  1196

seq1  GATGTTATCAATGAAAACAATCCTTAAGTGG  1218
      ||||||||| ||| ||||||||| | |||||
seq2  GATGTTATC-ATG-AAACAATCC-TGAGTGG  1224


seq1: chr1_3278377_3278606
seq2: B6Ng01-186C05.g_712_802

seq1  TTTTTGGTTGTGAGCCTAGCCTTCAACGGCTGAGCCATCTCTCCAGCCCT  50
      ||||||||||||||||||||||| || ||||||| |||||||||| |   
seq2  TTTTTGGTTGTGAGCCTAGCCTTTAATGGCTGAGACATCTCTCCATCAAA  50

seq1  CTTCTTCTTTTTAAGTTACTTTTAATTTTTACA-----GTCAAGTCATT-  94
      |           |||| |    |   | |  ||     ||||||||  | 
seq2  C-----------AAGTGAAAGATCTGTATGGCAAGAACGTCAAGTCTCTC  89

seq1  -ACCCCCTTCCTGGTCTGCCATCCCACAGTTCCTCACCCCATTCCTTCTC  143
       |                                                
seq2  AA------------------------------------------------  91

seq1  TCGCTTGTCTTTAAGAGGATGGCCCCAAACCCCAAACCCCCACCCTCTGC  193
                                                        
seq2  --------------------------------------------------  91

seq1  CAGGCCTTCCCACTCTCTGGGGCCTCAAGTCTCTCAA  230
                                           
seq2  -------------------------------------  91


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