BAC Information

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BAC

Clone NameB6Ng01-186F18
Chromosome1 (Build37)
Map Location 59,378,753 - 59,505,739
singlet/doubletdoublet
Overlap geneAls2cr7
Upstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186F18.bB6Ng01-186F18.g
ACCGA011225GA011226
length1,1901,111
definitionB6Ng01-186F18.b B6Ng01-186F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,504,549 - 59,505,739)(59,378,753 - 59,379,871)
sequence
gaattcctgcttccaccagaggaggatgcttgatgcaaactgatggtctg
cctggaagtggctttggtccacaactacctggagaatcaaaaaacaaagc
aaaacaaaacaaaacaaaacaaaaaaaacccacaaaacagattccccagg
gatcctttgagtcggaatctcagtgggaaggctgcctgaggattgttttt
ctaaagcctctcctcaggtacggaggtggtacggaaactgaagacttata
aagacctttctagcatgaatacagtctttgttgtgctttaaacctgcaaa
tgcttgttaactagttggaattccaaatccacaaactggctaaacttctg
tgggcctgagtggtatctggggcggattcttctgaccggtatctttccta
agatgggccaggagggccttccccctggattctttcagacttttgagctc
ctagcacagggactcagtagctttgggcttatgttgccaagatctgacgc
cttagaaggggtagacatggctgacacagggaggagggagaacaagtccc
cctacttgcccaagcccagagtgttcctacagcttctgtctgatggctcc
tgcctgatgccctcccaatcaactgtctctctttcatcccccactttccc
ctgaaaccctctcctgcttccttaggacttatttcctcgtattccctgca
gtccataggcattcacgcttacggcctttaaagcggatcttttcgactta
catattcttgctcaacgtatattgtatctcagtcatcaattcattcaaca
catgtttgttgagtttcctgctttgtgccagacttttgtgggccacattg
gtgaacaaacttgacaaagacccttgcttctcatgggatgcatattctaa
caggatgatacacatttactttatgggtttaaaagaaaagaaaggactgc
agggctggagcccggttggtagagctaggctaatacacacaaagcactgg
gttttcatccccagcagcacaaaaaacactatggcagccacacatctgta
actcagcggtatgaggcagagcaagagcactagagtccaggttcaaggtc
attatggatcgattctgggacaaggactgaagggcatatttctacaaaac
agacctgtcctccaaggtcctccgagcatccctcgagtca
gaattccaactgaactcagataagagctcacttaagacagctgctgtgga
aggagttggaggaaaagccgccctggtgatttattattgtctttggaaga
aagcatttttagaggctgctgaagccagagaaacagaccctcttgaaatg
gtgctgtgtaagatgcttgtttgtccatagctctttctctcattgatcgc
tcaaaacttaactactgaaaaaaaaatcaatagcaaagaggcaaggtcat
ctggcttgtgggtatctgcatgcaagtgggagggtaggtcagagacaggc
tgtgggccttggctctgcttcccagcagctccccaactgaccctgcctgc
tttgctgatgtagctacagaaaagatgtggagagagtctgaatttcagtc
tatacagaaccagagggctcaagttcaaaatgttgtttgccctcctgggg
tccaagggcatccatctggaattcctgagaggctcgtttgcccttgttac
attctctctttcctgttttgggggaaaaaaaaaaaaaaaaaacctcactc
actaagtaggagtctgatgttgtgttctgcagtttttatacacactggtt
aatggacttctcacaacagtctccctgggttgctgcagttgcggaagtga
agctcaggcaagcatgtcgagttgctggcaagtgctaggccccgctttct
gggctggatcagcaatcctccaaccttaacctcactagcaacatctggag
cctattaaagacataataacagcaaacaactaaccgatgtgtggcccctc
ccagacctgttaaatcaggctctctagggggtggagccaggcccgccttc
ttttaaaagctctgcaggtgaggccaccctaccctgttggccctgcgccc
atctcctgaaacttctgttcaagagcaaaggagagaggagagaaaacatt
gagaccaggagcttttgagactgtacacatgccagaggccttattctaat
cttcgatactccaatgattctcatttaacagttctgaaactctcctgtgc
ttcaccagacagtttagatcctccacccttaagtcccagagccactgaat
tggcagaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59504549_59505739
seq2: B6Ng01-186F18.b_32_1220 (reverse)

seq1  GACT-GAGGGATGCTGGGAGAACC-TGGAGGCCAGGTCTGTTTTGTAG-A  47
      |||| |||||||||| |||| ||| |||||| |||||||||||||||| |
seq2  GACTCGAGGGATGCTCGGAGGACCTTGGAGGACAGGTCTGTTTTGTAGAA  50

seq1  ATATGCCCCTCAGTCCCTTGTCCCAGGATCTGAAACCAAATAATGGCCTT  97
      |||||||| ||||| ||||||||||| |||   | ||  |||||| ||||
seq2  ATATGCCCTTCAGT-CCTTGTCCCAGAATC--GATCC--ATAATGACCTT  95

seq1  GAACCTGGAACTTCTGGTGCTCTTGCCTCTGCCTCCTGACCGCTGGAGTT  147
      |||||||||   ||| ||||||||| ||||||||| | |||||| |||||
seq2  GAACCTGGA--CTCTAGTGCTCTTG-CTCTGCCTCAT-ACCGCT-GAGTT  140

seq1  ACAGATGTGT-GCTGCCATAGTG-TTTTTGTGCTGCTGGGGATGAAAACC  195
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAGATGTGTGGCTGCCATAGTGTTTTTTGTGCTGCTGGGGATGAAAACC  190

seq1  CAGTGCTTTGTGTGTATTAGCCTAGCTCTACCAACCGGGCTCCAGCCCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGTGTGTATTAGCCTAGCTCTACCAACCGGGCTCCAGCCCTG  240

seq1  CAGTCCTTTC-TTTCTTTTAAACCCAT-AAGTAAATGTGTATCATCCTGT  293
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  CAGTCCTTTCTTTTCTTTTAAACCCATAAAGTAAATGTGTATCATCCTGT  290

seq1  TAGAATATGCATCCCATGAG-AGCAAGGGTCTTTGTCAAGTTTGTTCACC  342
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGAATATGCATCCCATGAGAAGCAAGGGTCTTTGTCAAGTTTGTTCACC  340

seq1  AATGTGGCCCACAAAAGTCTGGCACAAAGCAGGAAACTCAACAAACATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCCCACAAAAGTCTGGCACAAAGCAGGAAACTCAACAAACATGT  390

seq1  GTTGAATGAATTGATGACTGAGATACAATATACGTTGAGCAAGAATATGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGAATTGATGACTGAGATACAATATACGTTGAGCAAGAATATGT  440

seq1  AAGTCGAAAAGATCCGCTTTAAAGGCCGTAAGCGTGAATGCCTATGGACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGAAAAGATCCGCTTTAAAGGCCGTAAGCGTGAATGCCTATGGACT  490

seq1  GCAGGGAATACGAGGAAATAAGTCCTAAGGAAGCAGGAGAGGGTTTCAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAATACGAGGAAATAAGTCCTAAGGAAGCAGGAGAGGGTTTCAGG  540

seq1  GGAAAGTGGGGGATGAAAGAGAGACAGTTGATTGGGAGGGCATCAGGCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGGGGGATGAAAGAGAGACAGTTGATTGGGAGGGCATCAGGCAG  590

seq1  GAGCCATCAGACAGAAGCTGTAGGAACACTCTGGGCTTGGGCAAGTAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCAGACAGAAGCTGTAGGAACACTCTGGGCTTGGGCAAGTAGGG  640

seq1  GGACTTGTTCTCCCTCCTCCCTGTGTCAGCCATGTCTACCCCTTCTAAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTTCTCCCTCCTCCCTGTGTCAGCCATGTCTACCCCTTCTAAGG  690

seq1  CGTCAGATCTTGGCAACATAAGCCCAAAGCTACTGAGTCCCTGTGCTAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGATCTTGGCAACATAAGCCCAAAGCTACTGAGTCCCTGTGCTAGG  740

seq1  AGCTCAAAAGTCTGAAAGAATCCAGGGGGAAGGCCCTCCTGGCCCATCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAAGTCTGAAAGAATCCAGGGGGAAGGCCCTCCTGGCCCATCTT  790

seq1  AGGAAAGATACCGGTCAGAAGAATCCGCCCCAGATACCACTCAGGCCCAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATACCGGTCAGAAGAATCCGCCCCAGATACCACTCAGGCCCAC  840

seq1  AGAAGTTTAGCCAGTTTGTGGATTTGGAATTCCAACTAGTTAACAAGCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTAGCCAGTTTGTGGATTTGGAATTCCAACTAGTTAACAAGCAT  890

seq1  TTGCAGGTTTAAAGCACAACAAAGACTGTATTCATGCTAGAAAGGTCTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTTTAAAGCACAACAAAGACTGTATTCATGCTAGAAAGGTCTTT  940

seq1  ATAAGTCTTCAGTTTCCGTACCACCTCCGTACCTGAGGAGAGGCTTTAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTTCAGTTTCCGTACCACCTCCGTACCTGAGGAGAGGCTTTAGA  990

seq1  AAAACAATCCTCAGGCAGCCTTCCCACTGAGATTCCGACTCAAAGGATCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCCTCAGGCAGCCTTCCCACTGAGATTCCGACTCAAAGGATCC  1040

seq1  CTGGGGAATCTGTTTTGTGGGTTTTTTTTGTTTTGTTTTGTTTTGTTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAATCTGTTTTGTGGGTTTTTTTTGTTTTGTTTTGTTTTGTTTTG  1090

seq1  CTTTGTTTTTTGATTCTCCAGGTAGTTGTGGACCAAAGCCACTTCCAGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTTGATTCTCCAGGTAGTTGTGGACCAAAGCCACTTCCAGGC  1140

seq1  AGACCATCAGTTTGCATCAAGCATCCTCCTCTGGTGGAAGCAGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCAGTTTGCATCAAGCATCCTCCTCTGGTGGAAGCAGGAATTC  1189

seq1: chr1_59378753_59379871
seq2: B6Ng01-186F18.g_65_1175

seq1  GAATTCCAACTGAACTCAGATAAGAGCTCACTTAAGACAGCTGCTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGAACTCAGATAAGAGCTCACTTAAGACAGCTGCTGTGGA  50

seq1  AGGAGTTGGAGGAAAAGCCGCCCTGGTGATTTATTATTGTCTTTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGAGGAAAAGCCGCCCTGGTGATTTATTATTGTCTTTGGAAGA  100

seq1  AAGCATTTTTAGAGGCTGCTGAAGCCAGAGAAACAGACCCTCTTGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTTAGAGGCTGCTGAAGCCAGAGAAACAGACCCTCTTGAAATG  150

seq1  GTGCTGTGTAAGATGCTTGTTTGTCCATAGCTCTTTCTCTCATTGATCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTAAGATGCTTGTTTGTCCATAGCTCTTTCTCTCATTGATCGC  200

seq1  TCAAAACTTAACTACTGAAAAAAAAATCAATAGCAAAGAGGCAAGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTAACTACTGAAAAAAAAATCAATAGCAAAGAGGCAAGGTCAT  250

seq1  CTGGCTTGTGGGTATCTGCATGCAAGTGGGAGGGTAGGTCAGAGACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTGGGTATCTGCATGCAAGTGGGAGGGTAGGTCAGAGACAGGC  300

seq1  TGTGGGCCTTGGCTCTGCTTCCCAGCAGCTCCCCAACTGACCCTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCTTGGCTCTGCTTCCCAGCAGCTCCCCAACTGACCCTGCCTGC  350

seq1  TTTGCTGATGTAGCTACAGAAAAGATGTGGAGAGAGTCTGAATTTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATGTAGCTACAGAAAAGATGTGGAGAGAGTCTGAATTTCAGTC  400

seq1  TATACAGAACCAGAGGGCTCAAGTTCAAAATGTTGTTTGCCCTCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAACCAGAGGGCTCAAGTTCAAAATGTTGTTTGCCCTCCTGGGG  450

seq1  TCCAAGGGCATCCATCTGGAATTCCTGAGAGGCTCGTTTGCCCTTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGCATCCATCTGGAATTCCTGAGAGGCTCGTTTGCCCTTGTTAC  500

seq1  ATTCTCTCTTTCCTGTTTTGGGGGAAAAAAAAAAAAAAAAAACCTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTTTCCTGTTTTGGGGGAAAAAAAAAAAAAAAAAACCTCACTC  550

seq1  ACTAAGTAGGAGTCTGATGTTGTGTTCTGCAGTTTTTATACACACTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTAGGAGTCTGATGTTGTGTTCTGCAGTTTTTATACACACTGGTT  600

seq1  AATGGACTTCTCACAACAGTCTCCCTGGGTTGCTGCAGTTGCGGAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTTCTCACAACAGTCTCCCTGGGTTGCTGCAGTTGCGGAAGTGA  650

seq1  AGCTCAGGCAAGCATGTCGAGTTGCTGGCAAGTGCTAGGCCCCGCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCAAGCATGTCGAGTTGCTGGCAAGTGCTAGGCCCCGCTTTCT  700

seq1  GGGCTGGATCAGCAATCCTCCAACCTTAACCTCACTAGCAACATCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGATCAGCAATCCTCCAACCTTAACCTCACTAGCAACATCTGGAG  750

seq1  CCTATTAAAGACATAATAACAGCAAACAACTAACCGATGTGTGGCCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAAGACATAATAACAGCAAACAACTAACCGATGTGTGGCCCCTC  800

seq1  CCAGACCTGTTAAATCAGGCTCTCTAGGGGGTGGAGCCAGG-CCGCCTTC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGACCTGTTAAATCAGGCTCTCTAGGGGGTGGAGCCAGGCCCGCCTTC  850

seq1  TTTTAAAAGCTCTGCAGGTGAGGCCACCCTACCCTGTTGG-CCTGCGCCC  898
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TTTTAAAAGCTCTGCAGGTGAGGCCACCCTACCCTGTTGGCCCTGCG-CC  899

seq1  CATCTCCTGAAAC-TCTGTTCAAGAGCAAAAGGAAGAGAGGAGAGAAAAA  947
      ||||||||||||| ||||||||||||||||  | ||||||||||| ||||
seq2  CATCTCCTGAAACTTCTGTTCAAGAGCAAA--GGAGAGAGGAGAG-AAAA  946

seq1  CAATGAGACCAGGAGCTTTTGAGACTGTACCACATGCCAGAGGCCTTA-T  996
      || |||||||||||||||||||||||||| |||||||||||||||||| |
seq2  CATTGAGACCAGGAGCTTTTGAGACTGTA-CACATGCCAGAGGCCTTATT  995

seq1  CTAATCTTTCCGGATACTCCAAAATGATTCTCATTT-ACAGTTCTGGAAA  1045
      ||||||||    ||||||||  |||||||||||||| |||||||| ||||
seq2  CTAATCTT---CGATACTCC--AATGATTCTCATTTAACAGTTCT-GAAA  1039

seq1  CTCTCTGTTGCTTCACCAGACAGGTTAAGAAATCCT-CACCCCTAAGTCC  1094
      |||||   ||||||||||||||| ||   | ||||| ||||| |||||||
seq2  CTCTCCTGTGCTTCACCAGACAGTTT---AGATCCTCCACCCTTAAGTCC  1086

seq1  CAGAGCACCTGAA-TGGCAGAGAGAT  1119
      ||||||  ||||| ||||||| ||||
seq2  CAGAGCCACTGAATTGGCAGA-AGAT  1111