BAC Information

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BAC

Clone NameB6Ng01-186N24
Chromosome1 (Build37)
Map Location 102,467,069 - 102,641,872
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N24.bB6Ng01-186N24.g
ACCGA011606GA011607
length1,1701,026
definitionB6Ng01-186N24.b B6Ng01-186N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,640,697 - 102,641,872)(102,467,069 - 102,468,078)
sequence
gaattcagaagtctgagaaagtctctaaaacaggacagatgcaaaaagcc
cttcacaacttttatacagagtaagaacacctaaggagtcacagaccatc
caagctgcctggaaacgcatggaaagctctctgatctgttgagtcatgca
aagtgctcaggctaataagattcatgaggcatcacctgagctctgaaaat
ttcttacagaagaccccagactcagatagtatgcaaagactaaaagcatt
tattctgaagaaacatgtagcataaaagtgtaaccattgttcaaaatggc
aagagtagacaaagacatttgagtcccttttatatcagaactgctcaatc
gcttctgagataactgaaacataatacacattcttaggggaaaaacaaaa
acaaaaaacaaaacaaaacaaaaaaacattaacagaactcgggaggcaga
ggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttc
caggtcagccagggctatatggagaaaccctgtctcgaaaaacaaaaaaa
caacaaaaagaaggtataaagaagatatacaccacgggattcctggtgca
aaaacaggagctaagatattgactgggtttatctaaacaaaacttcaaag
atggctaatttagagtcttaagcttttcatgatcctttaatctagtaaca
aatagtgaatgtaaagcaagataattgcttctaagatatatgcacacaga
cattctcttatagctacttttttcaatttatgacatgaatttaagtgcaa
acttctagtgatctttttatctttgtgagcatatgcaagaaatgagaaca
aaggacagagataagtctccctctccttttcttcccagacttagagctgt
aacagttacaacagagacaggagaaaggctgctttccccctagccctccc
tctatgtcacattgtgataatcagaggctgaagcttccagccccaaagtg
actaagacaggtagatcagatttgaaagcaaggtaccttagccaatgaga
ctgtggcctaatttcttgggtggaaataaatgggatgacaaaacaaaaaa
agggactactttacatgtaccagcatgaggcctaattgccatgatcatgt
aaggttggcaaagttctgct

gaattcaaggtaggtcagtctggtaaagcagcagaaaagatcatttcagg
aggcattttgtatatttctatgtgtgtgagtatagctgtgagcataaaaa
cacagaggaggagttctttataggcttttctgcaaatatgaaatagaggt
tcttgcaaaagcctcataaagtcacaccttaccttttaagaatgaaataa
aatgacacataattcagagtctaagtgagcattttaaaaatggaataaca
tttattcaatatataattaaattgatagatttgatttgagttttaaaaga
ataatttctaaattccccatacttaagacaaaggatatctttcctaacca
ctttgcacatgagagattagaaacagagttcagcagtcaagaagaaatat
actgaaatggaacaaaatgggaaatagaatttttgcaaagcatgtcaagt
aaacaggatatatcagtagaagatgaaatataaaaagccaaaagtccaca
ctccttgtgtcccatctagtgcagtaattactatttttctgctttctttc
cttatgccttgcagttgtaccatcggtatttactacactcatgccatttg
tataatgaaatttggagaatatagaaagtagtgttttactcaaaggttgg
aagaaaatcaattatcatgtaacttttgtaattttcaacatggctataat
ctctatgtaggtacaaatatgcatttgttttattagtatatattaattac
aaataagatttcaattatgatattttcatatgtttgtacaatgtaaaaga
acatcaaaaaacaaacagttaaacagggctttttctttgggtgtgtctat
gttttttgatatgtgtcctactgtatttctgggatgtgggttgctcttcc
atcttaagtttttggaggtttctcattggaagtttgatatcataaattat
ctaagaactagctgtccagtatggcctagggaatctatccgaacttcttc
catcttattcaccaccacagtttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102640697_102641872
seq2: B6Ng01-186N24.b_43_1212 (reverse)

seq1  AGCAGACTTTTTCCAAACTTACATGATCATTGGGCAAATTTAGCTTCTAT  50
      ||||||  ||| |||| |||||||||||||  ||| ||||  || ||   
seq2  AGCAGAACTTTGCCAACCTTACATGATCAT--GGC-AATTAGGCCTC---  44

seq1  TTCTTTGTACATGT-AAGTAGTTCCTTTTTTTTTTTTTTTTTTTTCATCC  99
       |  | |||||||| ||||||| ||      ||||||| |||| ||||||
seq2  ATGCTGGTACATGTAAAGTAGTCCC------TTTTTTTGTTTTGTCATCC  88

seq1  CATTTTATTTCCACCC-AGAAATTAGGCCACAGTCTCATT-GCTAAGGTA  147
      || ||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CA-TTTATTTCCACCCAAGAAATTAGGCCACAGTCTCATTGGCTAAGGTA  137

seq1  CTTTGCTTTCAAATCTGATCTACCTGTCTTAGTCACTTTGGGGCTGGAAG  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTCAAATCTGATCTACCTGTCTTAGTCACTTTGGGGCTGGAAG  187

seq1  CTTCAGCCTCTGATTATCACAATGTGACATAGAGGGA-GGCTAGGGGG-A  245
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  CTTCAGCCTCTGATTATCACAATGTGACATAGAGGGAGGGCTAGGGGGAA  237

seq1  AGCAGCCTTTCTCCTGTCTCTGTTGTAACTGTTACAGCTCTAAGTCTGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTTCTCCTGTCTCTGTTGTAACTGTTACAGCTCTAAGTCTGGG  287

seq1  AAGAAAAGGAGAGGGAGACTTATCTCTGTCCTTTGTTCTCATTTCTTGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAGAGGGAGACTTATCTCTGTCCTTTGTTCTCATTTCTTGCA  337

seq1  TATGCTCAC-AAGATAAAAAGATCACTAGAAGTTTGCACTTAAATTCATG  394
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCACAAAGATAAAAAGATCACTAGAAGTTTGCACTTAAATTCATG  387

seq1  TCATAAATTG-AAAAAGTAGCTATAAGAGAATGTCTGTGTGCATATATCT  443
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTGAAAAAAGTAGCTATAAGAGAATGTCTGTGTGCATATATCT  437

seq1  TAGAAGCAATTATCTTGCTTTACATTCACTATTTGTTACTAGATTAAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAATTATCTTGCTTTACATTCACTATTTGTTACTAGATTAAAGG  487

seq1  ATCATGAAAAGCTTAAGACTCTAAATTAGCCATCTTTGAAGTTTTGTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAAGCTTAAGACTCTAAATTAGCCATCTTTGAAGTTTTGTTTA  537

seq1  GATAAACCCAGTCAATATCTTAGCTCCTGTTTTTGCACCAGGAATCCCGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCAGTCAATATCTTAGCTCCTGTTTTTGCACCAGGAATCCCGT  587

seq1  GGTGTATATCTTCTTTATACCTTCTTTTTGTTGTTTTTTTGTTTTTCGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATATCTTCTTTATACCTTCTTTTTGTTGTTTTTTTGTTTTTCGAG  637

seq1  ACAGGGTTTCTCCATATAGCCCTGGCTGACCTGGAACTCACTTTGTAGAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCCATATAGCCCTGGCTGACCTGGAACTCACTTTGTAGAC  687

seq1  CAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCT  737

seq1  GTTAATGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTCCCCTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTCCCCTAA  787

seq1  GAATGTGTATTATGTTTCAGTTATCTCAGAAGCGATTGAGCAGTTCTGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTATTATGTTTCAGTTATCTCAGAAGCGATTGAGCAGTTCTGAT  837

seq1  ATAAAAGGGACTCAAATGTCTTTGTCTACTCTTGCCATTTTGAACAATGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGACTCAAATGTCTTTGTCTACTCTTGCCATTTTGAACAATGG  887

seq1  TTACACTTTTATGCTACATGTTTCTTCAGAATAAATGCTTTTAGTCTTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTTATGCTACATGTTTCTTCAGAATAAATGCTTTTAGTCTTTG  937

seq1  CATACTATCTGAGTCTGGGGTCTTCTGTAAGAAATTTTCAGAGCTCAGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATCTGAGTCTGGGGTCTTCTGTAAGAAATTTTCAGAGCTCAGGT  987

seq1  GATGCCTCATGAATCTTATTAGCCTGAGCACTTTGCATGACTCAACAGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCATGAATCTTATTAGCCTGAGCACTTTGCATGACTCAACAGAT  1037

seq1  CAGAGAGCTTTCCATGCGTTTCCAGGCAGCTTGGATGGTCTGTGACTCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTTTCCATGCGTTTCCAGGCAGCTTGGATGGTCTGTGACTCCT  1087

seq1  TAGGTGTTCTTACTCTGTATAAAAGTTGTGAAGGGCTTTTTGCATCTGTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCTTACTCTGTATAAAAGTTGTGAAGGGCTTTTTGCATCTGTC  1137

seq1  CTGTTTTAGAGACTTTCTCAGACTTCTGAATTC  1176
      |||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGAGACTTTCTCAGACTTCTGAATTC  1170


seq1: chr1_102467069_102468078
seq2: B6Ng01-186N24.g_66_1091

seq1  GAATTCAAGGTAGGTCAGTCTGGTAAAGCAGCAGAAAAGATCATTTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTAGGTCAGTCTGGTAAAGCAGCAGAAAAGATCATTTCAGG  50

seq1  AGGCATTTTGTATATTTCTATGTGTGTGAGTATAGCTGTGAGCATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTGTATATTTCTATGTGTGTGAGTATAGCTGTGAGCATAAAAA  100

seq1  CACAGAGGAGGAGTTCTTTATAGGCTTTTCTGCAAATATGAAATAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGAGGAGTTCTTTATAGGCTTTTCTGCAAATATGAAATAGAGGT  150

seq1  TCTTGCAAAAGCCTCATAAAGTCACACCTTACCTTTTAAGAATGAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAAAGCCTCATAAAGTCACACCTTACCTTTTAAGAATGAAATAA  200

seq1  AATGACACATAATTCAGAGTCTAAGTGAGCATTTTAAAAATGGAATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACATAATTCAGAGTCTAAGTGAGCATTTTAAAAATGGAATAACA  250

seq1  TTTATTCAATATATAATTAAATTGATAGATTTGATTTGAGTTTTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAATATATAATTAAATTGATAGATTTGATTTGAGTTTTAAAAGA  300

seq1  ATAATTTCTAAATTCCCCATACTTAAGACAAAGGATATCTTTCCTAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTAAATTCCCCATACTTAAGACAAAGGATATCTTTCCTAACCA  350

seq1  CTTTGCACATGAGAGATTAGAAACAGAGTTCAGCAGTCAAGAAGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCACATGAGAGATTAGAAACAGAGTTCAGCAGTCAAGAAGAAATAT  400

seq1  ACTGAAATGGAACAAAATGGGAAATAGAATTTTTGCAAAGCATGTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGGAACAAAATGGGAAATAGAATTTTTGCAAAGCATGTCAAGT  450

seq1  AAACAGGATATATCAGTAGAAGATGAAATATAAAAAGCCAAAAGTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGATATATCAGTAGAAGATGAAATATAAAAAGCCAAAAGTCCACA  500

seq1  CTCCTTGTGTCCCATCTAGTGCAGTAATTACTATTTTTCTGCTTTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTGTCCCATCTAGTGCAGTAATTACTATTTTTCTGCTTTCTTTC  550

seq1  CTTATGCCTTGCAGTTGTACCATCGGTATTTACTACACTCATGCCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCTTGCAGTTGTACCATCGGTATTTACTACACTCATGCCATTTG  600

seq1  TATAATGAAATTTGGAGAATATAGAAAGTAGTGTTTTACTCAAAGGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAAATTTGGAGAATATAGAAAGTAGTGTTTTACTCAAAGGTTGG  650

seq1  AAGAAAATCAATTATCATGTAACTTTTGTAATTTTCAACATGGCTATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCAATTATCATGTAACTTTTGTAATTTTCAACATGGCTATAAT  700

seq1  CTCTATGTAGGTACAAATATGCATTTGTTTTATTAGTATATATTAATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTAGGTACAAATATGCATTTGTTTTATTAGTATATATTAATTAC  750

seq1  AAATAAGATTTCAATTATGATATTTTCATATGTTTGTACAATGTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATTTCAATTATGATATTTTCATATGTTTGTACAATGTAAAAGA  800

seq1  ACATC-AAAAACAAACAGTTAAACAGGGCTTTTTCTTT-GGTGTGTCTAT  848
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATCAAAAAACAAACAGTTAAACAGGGCTTTTTCTTTGGGTGTGTCTAT  850

seq1  G-TTTTTGATATGTGT-CTACTGTATTTCT-GGATGTGGGTTGCTC-TCC  894
      | |||||||||||||| ||||||||||||| ||||||||||||||| |||
seq2  GTTTTTTGATATGTGTCCTACTGTATTTCTGGGATGTGGGTTGCTCTTCC  900

seq1  ATCTT-AGTTTTT-GAGGTTTCTCATT-GAAGCTTGATATCATAAATTAT  941
      ||||| ||||||| ||||||||||||| |||| |||||||||||||||||
seq2  ATCTTAAGTTTTTGGAGGTTTCTCATTGGAAGTTTGATATCATAAATTAT  950

seq1  CTA--GACTAGCTGTCCAGTATGCCCTAGGG-ATCTATCTGA--CTCTTC  986
      |||   ||||||||||||||||| ||||||| ||||||| ||   |||||
seq2  CTAAGAACTAGCTGTCCAGTATGGCCTAGGGAATCTATCCGAACTTCTTC  1000

seq1  CATC-TATTCA-CACCACAGTTTCTG  1010
      |||| |||||| ||||||||||||||
seq2  CATCTTATTCACCACCACAGTTTCTG  1026


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