BAC Information

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BAC

Clone NameB6Ng01-187N05
Chromosome1 (Build37)
Map Location 133,249,111 - 133,371,951
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042826, LOC100042821
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187N05.bB6Ng01-187N05.g
ACCGA012298GA012299
length1,203896
definitionB6Ng01-187N05.b B6Ng01-187N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,249,111 - 133,250,315)(133,371,060 - 133,371,951)
sequence
gaattccagtgccgtactctctgcagaggacagagtgttgaaaaagcata
ggcctctaacctagaaagctagtttatccctctggcctgaaaaaggggaa
aataccagctttgttgctggttatgtgctaaacagataatacacttcaca
catatctggtactgtgtagacttgaagctaacaccaatcacaagcatcct
ccaatctactgacctctacctttcagcttctcacatttcttttcctgaaa
tattacccttcactttcacctgctggaattggactcactctttaagatcc
atattaaattctcagactctgggaagccaaccagccctgcattcctggtc
ccacttgaactcaactgcattcatcctcatatgacccccaatacacgcag
tcattccgaggcctgcaatttcatatcaccccacccagaatgcaggtatc
ttagagttttccagcatcttattcctgtttacaatttttcctagtaggtc
ttattcatggaaaacattcaataaagttgactgatggataccacaggcaa
agactcaagcttttcaggaaatcatctagtgggctgagtgctgacccatg
tgttctgctgcatagtctaagaacatcagggagcaatacctctatcaccc
ttctgtagcttctctgtgccaatgagtcagggtcaaacatacaatgtgcc
ctccggttttaccatgctttcagctaacccaggagacatggaaagggcct
tggtcatctacatatttgtagggggaaaactcagccttcaaaaaagaagc
cgtatctggcagggttaattgaaatttgagtatttcccatgagaattcca
acaggtagagagaacacacagttttgtttataccagaaataaatgctata
caaatactataaaatgctacacaaatactataaaaacttggggagaaaat
aaatttttagaaaaatattgaagacagagcatctcagtgtatggggcatt
aagtccatagctcatgattcccttacggctgagattctctctcagatatc
tagagaaaacctagaaacaaaaaaaaaaatggggtgctcgtatcactcat
ttccttacggagaaagaaaaaacactgttctcataaactcatatgggaaa
ccaggtccttcatgtccagttcaggtgtatagtggccatcaccaggactt
tct
gaattcagggagctggagagatggtttagtggttaagaacacttgttctt
gtggagaacttgggttcaaatggtggctcacaaccatctatgtaattcca
ggtccaggagatttgactcctgatctatgaggacaccaagcacacacatg
ttgtacatatatgcatgaaagcaaaaacactcatatacataaaaataaat
aaataaatctaaaactggaattcagctcctcattctctgtgcatgtctac
ctgtgcttttgcatacaagattcttcctcttcttcctccgcaaccatgct
ttctcttactcttcaccttgtgctctgctgcataacactggactcctgtt
gcttcccttaatctgccaagcatgcttagcagagtcctgccttgagactc
tgaagcttcttcttcctagcacactagcattttcatagttcatttctctg
ctgtcttgaatctctacttgaaagttaccttattaaatagcctttgtgac
agttctctagaaaatgtaccctgacttggtattttctttttctttttttt
taaatggaaatcagagttagtttttttttttttaagatttatttatgtat
atgagtacactgtacacaccagaagaggacatcggatcccactacagatg
gttgtgagccaccatgtggttgctgggaattgaactcaaggacctctgga
agagtagtcagtgctctttaacagctgagtcatctctccagccctgacct
gtttgttttctgttcgattaaatttcaaatcactttcccccactccccac
tgtcctctaatgttcctgtgggaaaaggattttgttctgctctgtcttta
atgcttacaaagtgcttggtaggtattttgttgattgaatacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133249111_133250315
seq2: B6Ng01-187N05.b_46_1248

seq1  GAATTCCAGTGCCGTACTCTCTGCAGAGGACAGAGTGTTGAAAAAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCGTACTCTCTGCAGAGGACAGAGTGTTGAAAAAGCATA  50

seq1  GGCCTCTAACCTAGAAAGCTAGTTTATCCCTCTGGCCTGAAAAAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAACCTAGAAAGCTAGTTTATCCCTCTGGCCTGAAAAAGGGGAA  100

seq1  AATACCAGCTTTGTTGCTGGTTATGTGCTAAACAGATAATACACTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCTTTGTTGCTGGTTATGTGCTAAACAGATAATACACTTCACA  150

seq1  CATATCTGGTACTGTGTAGACTTGAAGCTAACACCAATCACAAGCATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGTACTGTGTAGACTTGAAGCTAACACCAATCACAAGCATCCT  200

seq1  CCAATCTACTGACCTCTACCTTTCAGCTTCTCACATTTCTTTTCCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTACTGACCTCTACCTTTCAGCTTCTCACATTTCTTTTCCTGAAA  250

seq1  TATTACCCTTCACTTTCACCTGCTGGAATTGGACTCACTCTTTAAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCTTCACTTTCACCTGCTGGAATTGGACTCACTCTTTAAGATCC  300

seq1  ATATTAAATTCTCAGACTCTGGGAAGCCAACCAGCCCTGCATTCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTCTCAGACTCTGGGAAGCCAACCAGCCCTGCATTCCTGGTC  350

seq1  CCACTTGAACTCAACTGCATTCATCCTCATATGACCCCCAATACACGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGAACTCAACTGCATTCATCCTCATATGACCCCCAATACACGCAG  400

seq1  TCATTCCGAGGCCTGCAATTTCATATCACCCCACCCAGAATGCAGGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCGAGGCCTGCAATTTCATATCACCCCACCCAGAATGCAGGTATC  450

seq1  TTAGAGTTTTCCAGCATCTTATTCCTGTTTACAATTTTTCCTAGTAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTTCCAGCATCTTATTCCTGTTTACAATTTTTCCTAGTAGGTC  500

seq1  TTATTCATGGAAAACATTCAATAAAGTTGACTGATGGATACCACAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGGAAAACATTCAATAAAGTTGACTGATGGATACCACAGGCAA  550

seq1  AGACTCAAGCTTTTCAGGAAATCATCTAGTGGGCTGAGTGCTGACCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAGCTTTTCAGGAAATCATCTAGTGGGCTGAGTGCTGACCCATG  600

seq1  TGTTCTGCTGCATAGTCTAAGAACATCAGGGAGCAATACCTCTATCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCTGCATAGTCTAAGAACATCAGGGAGCAATACCTCTATCACCC  650

seq1  TTCTGTAGCTTCTCTGTGCCAATGAGTCAGGGTCAAACATACAATGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCTTCTCTGTGCCAATGAGTCAGGGTCAAACATACAATGTGCC  700

seq1  CTCCGGTTTTACCATGCTTTCAGCTAACCCAGGAGACATGGAAAGGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTTTTACCATGCTTTCAGCTAACCCAGGAGACATGGAAAGGGCCT  750

seq1  TGGTCATCTACATATTTGTAGGGGGAAAACTCAGCCTTCAAAAAAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCTACATATTTGTAGGGGGAAAACTCAGCCTTCAAAAAAGAAGC  800

seq1  CGTATCTGGCAGGGTTAATTGAAATTTGAGTATTTCCCATGAGAATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTGGCAGGGTTAATTGAAATTTGAGTATTTCCCATGAGAATTCCA  850

seq1  ACAGGTAGAGAGAACACACAGTTTTGTTTATACCAGAAATAAATGCTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGAGAGAACACACAGTTTTGTTTATACCAGAAATAAATGCTATA  900

seq1  CAAATACTATAAAATGCTACACAAATACTATAAAAACTT-GGGAG-AAAT  948
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  CAAATACTATAAAATGCTACACAAATACTATAAAAACTTGGGGAGAAAAT  950

seq1  AAATTTTTAG-AAAATATTGAAGAACAGAGCATCTCAGTGTAT-GGGCAT  996
      |||||||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  AAATTTTTAGAAAAATATTGAAG-ACAGAGCATCTCAGTGTATGGGGCAT  999

seq1  TAAGTCCATAGCTCATGATTCCCTTACCGGCTGAGATTCTCTCTCAGATA  1046
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TAAGTCCATAGCTCATGATTCCCTTA-CGGCTGAGATTCTCTCTCAGAT-  1047

seq1  ATCTAGAGAAAACCTAGAAACAAAAAAAAAA--TGAGTGCTTCGTATCAC  1094
      |||||||||||||||||||||||||||||||   | |||| |||||||||
seq2  ATCTAGAGAAAACCTAGAAACAAAAAAAAAAATGGGGTGC-TCGTATCAC  1096

seq1  TTCAATTTCTTACAGGAGAAAGAAAAACAACTGTTCTCAATAAAACTCCA  1144
       ||| || ||||| |||||||||||||  ||||||||||   ||||| ||
seq2  -TCATTTCCTTAC-GGAGAAAGAAAAAACACTGTTCTCA--TAAACT-CA  1141

seq1  TAATGGGAAAACCAAGTTCTCTCATGTCCAGTTTCAGTGTAT-GTGG-CA  1192
      | ||||| |||||| || || ||||||||||||   |||||| |||| ||
seq2  T-ATGGG-AAACCAGGTCCT-TCATGTCCAGTTCAGGTGTATAGTGGCCA  1188

seq1  TCAC--AGACTTTCT  1205
      ||||   ||||||||
seq2  TCACCAGGACTTTCT  1203

seq1: chr1_133371060_133371951
seq2: B6Ng01-187N05.g_63_958 (reverse)

seq1  TGATGTATTCAATCAAC-AAATACCTACCAAGCACTTTGTAAGCATTAAA  49
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATGTATTCAATCAACAAAATACCTACCAAGCACTTTGTAAGCATTAAA  50

seq1  GACAGAGCAGAACAAAATCCTTTTCCCACAGGAACATTAGAGGACAGTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCAGAACAAAATCCTTTTCCCACAGGAACATTAGAGGACAGTGG  100

seq1  GGAGTGGGGGAAAGTGATTTGAAA-TTAATCGAACAGAAAAC-AACAGGT  147
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GGAGTGGGGGAAAGTGATTTGAAATTTAATCGAACAGAAAACAAACAGGT  150

seq1  CAGGGCTGGAGAGATGACTCAGCTGTT-AAGAGCACTGACTACTCTTCCA  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGGCTGGAGAGATGACTCAGCTGTTAAAGAGCACTGACTACTCTTCCA  200

seq1  GAGGTCCTTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATC  250

seq1  TGTAGTGGGATCCGATGTCCTCTTCTGGTGTGTACAGTGTACTCATATAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGGATCCGATGTCCTCTTCTGGTGTGTACAGTGTACTCATATAC  300

seq1  ATAAATAAATCTTAAAAAAAAAAAAACTAACTCTGATTTCCATTTAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCTTAAAAAAAAAAAAACTAACTCTGATTTCCATTTAAAAA  350

seq1  AAAAGAAAAAGAAAATACCAAGTCAGGGTACATTTTCTAGAGAACTGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAAAATACCAAGTCAGGGTACATTTTCTAGAGAACTGTCA  400

seq1  CAAAGGCTATTTAATAAGGTAACTTTCAAGTAGAGATTCAAGACAGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTATTTAATAAGGTAACTTTCAAGTAGAGATTCAAGACAGCAGA  450

seq1  GAAATGAACTATGAAAATGCTAGTGTGCTAGGAAGAAGAAGCTTCAGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACTATGAAAATGCTAGTGTGCTAGGAAGAAGAAGCTTCAGAGT  500

seq1  CTCAAGGCAGGACTCTGCTAAGCATGCTTGGCAGATTAAGGGAAGCAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGCAGGACTCTGCTAAGCATGCTTGGCAGATTAAGGGAAGCAACA  550

seq1  GGAGTCCAGTGTTATGCAGCAGAGCACAAGGTGAAGAGTAAGAGAAAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCAGTGTTATGCAGCAGAGCACAAGGTGAAGAGTAAGAGAAAGCA  600

seq1  TGGTTGCGGAGGAAGAAGAGGAAGAATCTTGTATGCAAAAGCACAGGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCGGAGGAAGAAGAGGAAGAATCTTGTATGCAAAAGCACAGGTAG  650

seq1  ACATGCACAGAGAATGAGGAGCTGAATTCCAGTTTTAGATTTATTTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGAGAATGAGGAGCTGAATTCCAGTTTTAGATTTATTTATTT  700

seq1  ATTTTTATGTATATGAGTGTTTTTGCTTTCATGCATATATGTACAACATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTATATGAGTGTTTTTGCTTTCATGCATATATGTACAACATG  750

seq1  TGTGTGCTTGGTGTCCTCATAGATCAGGAGTCAAATCTCCTGGACCTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTGGTGTCCTCATAGATCAGGAGTCAAATCTCCTGGACCTGGA  800

seq1  ATTACATAGATGGTTGTGAGCCACCATTTGAACCCAAGTTCTCCACAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAGATGGTTGTGAGCCACCATTTGAACCCAAGTTCTCCACAAGA  850

seq1  ACAAGTGTTCTTAACCACTAAACCATCTCTCCAGCTCCCTGAATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTCTTAACCACTAAACCATCTCTCCAGCTCCCTGAATTC  896