BAC Information

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BAC

Clone NameB6Ng01-187N13
Chromosome1 (Build37)
Map Location 163,685,447 - 163,828,376
singlet/doubletdoublet
Overlap geneFasl, AI848100, EG665109
Upstream geneRabgap1l, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134
Downstream genePigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187N13.bB6Ng01-187N13.g
ACCGA012310GA012311
length1,1851,113
definitionB6Ng01-187N13.b B6Ng01-187N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,685,447 - 163,686,620)(163,827,279 - 163,828,376)
sequence
gaattccatgtcacagcaaccttgtttcctgttatctaaggtcaatggtt
ctctatccacaagaaagtctttacttaatccatggcccatgtcaacctgt
ggccgtggtctaaaacaggttcagcagaatgctttgctactcaaagatga
tgcaaacgcaacagttggcaggtgtcagttttcaagctttgaagcggtac
ttttatgctttggtcatagcactataatcaaatatcttctcaaaatgcag
agtgagcatcaatgtaatgatccccagcacccagagaaccatgtgaccat
gacgtagcactctgtacaactacagtgaatggtgctgctatactggactg
actcctccaagctcctccaagacacaagtgaagatgcgtgattgattgcc
ttatacactcccacccatctaagatattgcttcttgactgctgcctgtag
atcccgagagctcactggtagataccagcagttcaagaacttaaatttaa
gagaaaaaatatacatatatacctttattttcactaattctaatatgttg
tatttatttattttgatgtggaaatgtcaattttaaatataaaaatgatt
ggcattaaggcattaatttaattatacaattaattaattaattaattgta
taattagctaaaaaacaaaaacaaaaacaaaaggggccataatatgagaa
agaattcttgcaataagttcacaaaagtctactaaagcatccaatcaaat
aatctctaaacaaaagtctaatacttagcacctattaaactctccaatga
gaaaaaaaacttagcaatatatctcttggatttactttcaaaaatttttt
attgttttttaattgaaaaatagattcttctctcatatatcccaaccaca
attttctctcaactcctccagcttctctcccttctcccctccccctccct
cagactcactcccccttctgtttccatttcagaaaaagcaggcttccaag
agacaacagccaaaacagggacaaaaagatacataaagaacagggcaaaa
agcctcctcacattggaggcctggagaagcccaacccaataggagaaaaa
tgtcttcaggaacgggcaaaagggtcaagaatacaccccactcctcactg
ttagagttccagaaactccgaggctaacaacatag
gaattccaatccacatgtactggctagttttgtgtcaacttgacacaggc
tggagttatcacagagaaaggagcttcagttggggaaatgcctacatgag
atccagctgtaaggcatttctcaattagtgatcaagctcggaggtcccct
tgtgggtgggaccatctctgggctggtagtcttaggttctataagagagc
aggctgagcaagccaggggaagcaagtcagtaagaaacacccctccatgg
cccctgcatcagctcttgctacctgacctgcttgagttccagtcctgact
tcctttgatgataaacagcagtatggaagtataagctgaataaacccttt
tgtccccaacttgcttcttggtcatgagtttgtgtaggaatagaaaccct
gactaagacatagttcacagatttgagaattccaatccacattagccagt
aatttacaaaggtaaacttactgcacaactagaattaataatgatcatat
ttgagttggatctgttcaacaaatcactagattgcctattcttttggaag
acacttatctgggcaacagggaaaaaaaaagtttatgtttatttcctaag
gagaatgttgttaggggcagtctcttttctcttaagacaaaaaacataag
aggatacatgtgagaagatgagaaagcagcggtggcaaaggaggttgaag
ataggaaatcagttctggtttgatggaaacatttgattgggtgagagaaa
atttcccaagggacagaaagggcttccgtttgctgccacagtaagttaac
ttgtaacgcgaaaggaggaagaaaatgtccgtggacttgatgattaggac
ataatattgtttgaaaaggaagtcagttatttaacaaatgcttcgttgtt
cttctcatgagttagttactttgccctgtcagaggggagtcagcagcccg
cagttgccatttctggttattctattagaggagtgaatctaacaacgaaa
aacagtctggctcctgttcttggacagaaaatgaattcatacttcttttt
tttattgaggaaatgatttatctatgattagttatatcacttgggcactc
cttcattttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163685447_163686620
seq2: B6Ng01-187N13.b_46_1230

seq1  GAATTCCATGTCACAGCAACCTTGTTTCCTGTTATCTAAGGTCAATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCACAGCAACCTTGTTTCCTGTTATCTAAGGTCAATGGTT  50

seq1  CTCTATCCACAAGAAAGTCTTTACTTAATCCATGGCCCATGTCAACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCACAAGAAAGTCTTTACTTAATCCATGGCCCATGTCAACCTGT  100

seq1  GGCCGTGGTCTAAAACAGGTTCAGCAGAATGCTTTGCTACTCAAAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGGTCTAAAACAGGTTCAGCAGAATGCTTTGCTACTCAAAGATGA  150

seq1  TGCAAACGCAACAGTTGGCAGGTGTCAGTTTTCAAGCTTTGAAGCGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGCAACAGTTGGCAGGTGTCAGTTTTCAAGCTTTGAAGCGGTAC  200

seq1  TTTTATGCTTTGGTCATAGCACTATAATCAAATATCTTCTCAAAATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTTGGTCATAGCACTATAATCAAATATCTTCTCAAAATGCAG  250

seq1  AGTGAGCATCAATGTAATGATCCCCAGCACCCAGAGAACCATGTGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCATCAATGTAATGATCCCCAGCACCCAGAGAACCATGTGACCAT  300

seq1  GACGTAGCACTCTGTACAACTACAGTGAATGGTGCTGCTATACTGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGCACTCTGTACAACTACAGTGAATGGTGCTGCTATACTGGACTG  350

seq1  ACTCCTCCAAGCTCCTCCAAGACACAAGTGAAGATGCGTGATTGATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCAAGCTCCTCCAAGACACAAGTGAAGATGCGTGATTGATTGCC  400

seq1  TTATACACTCCCACCCATCTAAGATATTGCTTCTTGACTGCTGCCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTCCCACCCATCTAAGATATTGCTTCTTGACTGCTGCCTGTAG  450

seq1  ATCCCGAGAGCTCACTGGTAGATACCAGCAGTTCAAGAACTTAAATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAGAGCTCACTGGTAGATACCAGCAGTTCAAGAACTTAAATTTAA  500

seq1  GAGAAAAAATATACATATATACCTTTATTTTCACTAATTCTAATATGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAATATACATATATACCTTTATTTTCACTAATTCTAATATGTTG  550

seq1  TATTTATTTATTTTGATGTGGAAATGTCAATTTTAAATATAAAAATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTTGATGTGGAAATGTCAATTTTAAATATAAAAATGATT  600

seq1  GGCATTAAGGCATTAATTTAATTATACAATTAATTAATTAATTAATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAGGCATTAATTTAATTATACAATTAATTAATTAATTAATTGTA  650

seq1  TAATTAGCTAAAAAACAAAAACAAAAACAAAAGGGGCCATAATATGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCTAAAAAACAAAAACAAAAACAAAAGGGGCCATAATATGAGAA  700

seq1  AGAATTCTTGCAATAAGTTCACAAAAGTCTACTAAAGCATCCAATCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTGCAATAAGTTCACAAAAGTCTACTAAAGCATCCAATCAAAT  750

seq1  AATCTCTAAACAAAAGTCTAATACTTAGCACCTATTAAACTCTCCAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAAACAAAAGTCTAATACTTAGCACCTATTAAACTCTCCAATGA  800

seq1  GAAAAAAAACTTAGCAATATATCTCTTGGATTTACTTTCAAAAATTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACTTAGCAATATATCTCTTGGATTTACTTTCAAAAATTTTTT  850

seq1  ATTGTTTTTTAATTG-AAAATAGATTCTTCTCTCATATATCCCAACCACA  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTAATTGAAAAATAGATTCTTCTCTCATATATCCCAACCACA  900

seq1  ATTTTCTCTCAACTCCTCCAGCTTCTCTCCC-TCTCCCCTCCCCCTCCCT  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTCTCTCAACTCCTCCAGCTTCTCTCCCTTCTCCCCTCCCCCTCCCT  950

seq1  CAGACTCACTCCCCC-TCTGTTTCCATTTCAGAAAAAGCAGGCTTCCAAG  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGACTCACTCCCCCTTCTGTTTCCATTTCAGAAAAAGCAGGCTTCCAAG  1000

seq1  AGACAACAGCC-AAACAGGACAAAAAAGATACAATAAG-ACAAGGC-AAA  1044
      ||||||||||| |||||||   |||||||||||  ||| ||| ||| |||
seq2  AGACAACAGCCAAAACAGGGACAAAAAGATACATAAAGAACAGGGCAAAA  1050

seq1  AGC--TCTCACATT-GAGG-CTGGAGA--GCCAACCCAATAGGAGGAAAA  1088
      |||   |||||||| |||| |||||||   |||||||||||||||  |||
seq2  AGCCTCCTCACATTGGAGGCCTGGAGAAGCCCAACCCAATAGGAG--AAA  1098

seq1  AATGTC-TCAAGGACAGGCAAAAGGGTCAGAGATACA-CCCACTCC-CAC  1135
      |||||| ||| | || |||||||||||||   ||||| |||||||| |||
seq2  AATGTCTTCAGGAACGGGCAAAAGGGTCAAGAATACACCCCACTCCTCAC  1148

seq1  TGTTAGGAGTCCCACAGAAACACC-AAGCTAACACCATAG  1174
      ||||| |||| |  ||||||| || | ||||||| |||||
seq2  TGTTA-GAGTTC--CAGAAACTCCGAGGCTAACAACATAG  1185

seq1: chr1_163827279_163828376
seq2: B6Ng01-187N13.g_67_1179 (reverse)

seq1  CCTT-AAATGAA-GAGTTCCC-AGTTATATAACTATTCATAGAT-AATCA  46
      |||| ||||||| |||| ||| ||| ||||||||| |||||||| |||||
seq2  CCTTAAAATGAAGGAGTGCCCAAGTGATATAACTAATCATAGATAAATCA  50

seq1  TTTCTTC-ATAAAAAAAAG-AGTATG-ATTCATTTTTCTGTCC-AGAACA  92
      |||| || ||||||||||| |||||| ||||| |||||||||| ||||||
seq2  TTTCCTCAATAAAAAAAAGAAGTATGAATTCA-TTTTCTGTCCAAGAACA  99

seq1  GGAG-CAGACTGTTTTTCGTTGTTAGA-TCACT-CTCT-ATAGAATAACC  138
      |||| |||||||||||||||||||||| ||||| |||| |||||||||||
seq2  GGAGCCAGACTGTTTTTCGTTGTTAGATTCACTCCTCTAATAGAATAACC  149

seq1  AGAAATGGCAACTGCGGGCTGCTGACT-CCCTCTGACAGGGC-AAGTAAC  186
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AGAAATGGCAACTGCGGGCTGCTGACTCCCCTCTGACAGGGCAAAGTAAC  199

seq1  TAACTCATGAGAAGAACAACGAAGCATTTGTT-AATAACTGACTTCCTTT  235
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAACTCATGAGAAGAACAACGAAGCATTTGTTAAATAACTGACTTCCTTT  249

seq1  TCAAACAATATTATGTCCTAATCATCAAGTCCACGGACATTTTCTTCCTC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATATTATGTCCTAATCATCAAGTCCACGGACATTTTCTTCCTC  299

seq1  CTTTCGCGTTACAAGTTAACTTACTGTGGCAGC-AACGGAAGCCCTTTCT  334
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTCGCGTTACAAGTTAACTTACTGTGGCAGCAAACGGAAGCCCTTTCT  349

seq1  GTCCCTTGGGAAATTTTCTCTCACCCAATCAAATGTTTCCATCAAACCAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGGGAAATTTTCTCTCACCCAATCAAATGTTTCCATCAAACCAG  399

seq1  AACTGATTTCCTATCTTCAACCTCCTTTGCCACCGCTGCTTTCTCATCTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTCCTATCTTCAACCTCCTTTGCCACCGCTGCTTTCTCATCTT  449

seq1  CTCACATGTATCCTCTTATGTTTTTTGTCTTAAGAGAAAAGAGACTGCCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTATCCTCTTATGTTTTTTGTCTTAAGAGAAAAGAGACTGCCC  499

seq1  CTAACAACATTCTCCTTAGGAAATAAACATAAACTTTTTTTTTCCCTGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACATTCTCCTTAGGAAATAAACATAAACTTTTTTTTTCCCTGTT  549

seq1  GCCCAGATAAGTGTCTTCCAAAAGAATAGGCAATCTAGTGATTTGTTGAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATAAGTGTCTTCCAAAAGAATAGGCAATCTAGTGATTTGTTGAA  599

seq1  CAGATCCAACTCAAATATGATCATTATTAATTCTAGTTGTGCAGTAAGTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAACTCAAATATGATCATTATTAATTCTAGTTGTGCAGTAAGTT  649

seq1  TACCTTTGTAAATTACTGGCTAATGTGGATTGGAATTCTCAAATCTGTGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGTAAATTACTGGCTAATGTGGATTGGAATTCTCAAATCTGTGA  699

seq1  ACTATGTCTTAGTCAGGGTTTCTATTCCTACACAAACTCATGACCAAGAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTTAGTCAGGGTTTCTATTCCTACACAAACTCATGACCAAGAA  749

seq1  GCAAGTTGGGGACAAAAGGGTTTATTCAGCTTATACTTCCATACTGCTGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGGGGACAAAAGGGTTTATTCAGCTTATACTTCCATACTGCTGT  799

seq1  TTATCATCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGTAGCAAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGTAGCAAG  849

seq1  AGCTGATGCAGGGGCCATGGAGGGGTGTTTCTTACTGACTTGCTTCCCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGGGGCCATGGAGGGGTGTTTCTTACTGACTTGCTTCCCCT  899

seq1  GGCTTGCTCAGCCTGCTCTCTTATAGAACCTAAGACTACCAGCCCAGAGA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTCAGCCTGCTCTCTTATAGAACCTAAGACTACCAGCCCAGAGA  949

seq1  TGGTCCCACCCACAAGGGGACCTCCGAGCTTGATCACTAATTGAGAAATG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCACCCACAAGGGGACCTCCGAGCTTGATCACTAATTGAGAAATG  999

seq1  CCTTACAGCTGGATCTCATGTAGGCATTTCCCCAACTGAAGCTCCTTTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGCTGGATCTCATGTAGGCATTTCCCCAACTGAAGCTCCTTTCT  1049

seq1  CTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACAT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACAT  1099

seq1  GTGGATTGGAATTC  1098
      ||||||||||||||
seq2  GTGGATTGGAATTC  1113