BAC Information

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BAC

Clone NameB6Ng01-187P13
Chromosome1 (Build37)
Map Location 136,020,094 - 136,207,584
singlet/doubletdoublet
Overlap geneChit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4
Upstream genePpp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414
Downstream geneLOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187P13.bB6Ng01-187P13.g
ACCGA012403GA012404
length1,1161,156
definitionB6Ng01-187P13.b B6Ng01-187P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,020,094 - 136,021,205)(136,206,437 - 136,207,584)
sequence
gaattcatagagtcatggcttgaagcattgctaaaggggtaaaggaagcc
tcgagtgtcgctaagtgacagcgcttgcctagcagttgtgtgaggctggg
gtaaatcctcaacaataaaacaaaacaaacaaaatgccctgttactgtat
aggagagtaaatcagaacaaagaaatataaaatcttgaaattattaaaag
gagcgagagatagactaacagccaatgtttccacaggaacacagctgtta
taacagtaagatgatatatttagtgttccaagagagtaattctattctca
gaagaaacatgctctaggaagaacacgaagtagggcaatttcataggacg
agaaaatggaattattttaccagcatacttatactaaaaaaagtattaaa
gggtgttctccagacagaaggaaaacaattctagatggaaaggctggaga
taaagatttttaaagtgacaaagatcaaaactcataggccagagtctgga
gagatggctcagcagttaagagtactgactactctttcagaggatctggg
ttaaagccccagcatccacacagtggctccagtcccaggagatcccatgc
cctcttcttgcctctgaaggcactacacataagtggtgcacacatatata
cacataagtggtgcacacacatatgtgcaggccaagcacctgtgtacata
aaataataaatattttatacacgctacaaaaaccattttaagacataaaa
catagaaaagtaaattcataggcttagagaaagggctaaatggagttaat
tgttacctagagattactagggaaaatataaggcaccaattatttgtact
attaatatttataatttctaaaaatatgaaagagcatataacttctaact
atgatccatgactgatcctttttaaactgtatttttcttttctttttttt
tttttagcatgccttgtaattcattggttgctgaaagccagacaatcatg
tttttcaaaataaaagaactgaaaaaaaaattttactgtgatattttata
ttaacttggacagggaccagcaccattactgcttgctatatttatactgt
tctctgagtttttcta
gaattcactccatagaccagactgtcctttgaactcagagatccacctgc
ctcttcccattaagtgttgggattaaaggcatgagccaccaccaccaggc
taatgccttctttcttgtagtagaaggatggtagacagttgggtatagca
actgtgtgtgggcaggcagtggggagcaggacgcaggggaaagaaagggc
agaggctctcctagttctgcacttggatgcggactatagaggataacttc
atttgtctgcttgataataaacatattctattcggtgtacaattttacat
atatcagcatgtgcagtttccttttaaaacagaacagctcaatgtgaaaa
catctagcaggatatgggaaaggtgtttgagggttgctatcaaaactgaa
ctgtccctgtttgctgtctgtagaggtaatgccttgtagtgcagtcttct
tgaggcgagtgacatcatgagtgggaacattaataaaggacctggagaat
tgcccaagtgatgacctggcctttggggaagcacactggctattcaagta
caggctactctgtgcttttttttctcccctagccttcagccaacattcag
tcattctctggacttcgaagctagccattccccagagtcaggctggcatc
ctttgcagatccactataccctggctgcctctcctctggctcagcaggct
tgaggttgacataagttggcaagttgtctatacatcactacacaccacct
tccagaggtggcaggaagggctctgtttttcttactccttggacaattgc
tcttgttcattgatgtaggccagaagtttctcgacccgtgggtcacagtt
gctttgggggtcagatatcagatagttatattatgatacataccattaca
aattacagttatgaaatagcaatgacgtctattttatgggttgggagtca
ccacaaggtgaagaactgcaagggtcgctgcattagacgacttgaggacc
cctggtgtagacagctgatacctgagtagacctgggtcattctgagatct
tgagatactctggcaccctcaaatcacttcagcttctttaggtaacaata
aactgaaaatgtaattgaccagcttcgtaccttccattggcgtgtaaggg
gtgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136020094_136021205
seq2: B6Ng01-187P13.b_46_1161

seq1  GAATTCATAGAGTCATGGCTTGAAGCATTGCTAAAGGGGTAAAGGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGTCATGGCTTGAAGCATTGCTAAAGGGGTAAAGGAAGCC  50

seq1  TCGAGTGTCGCTAAGTGACAGCGCTTGCCTAGCAGTTGTGTGAGGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGTCGCTAAGTGACAGCGCTTGCCTAGCAGTTGTGTGAGGCTGGG  100

seq1  GTAAATCCTCAACAATAAAACAAAACAAACAAAATGCCCTGTTACTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCTCAACAATAAAACAAAACAAACAAAATGCCCTGTTACTGTAT  150

seq1  AGGAGAGTAAATCAGAACAAAGAAATATAAAATCTTGAAATTATTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTAAATCAGAACAAAGAAATATAAAATCTTGAAATTATTAAAAG  200

seq1  GAGCGAGAGATAGACTAACAGCCAATGTTTCCACAGGAACACAGCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGAGATAGACTAACAGCCAATGTTTCCACAGGAACACAGCTGTTA  250

seq1  TAACAGTAAGATGATATATTTAGTGTTCCAAGAGAGTAATTCTATTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAAGATGATATATTTAGTGTTCCAAGAGAGTAATTCTATTCTCA  300

seq1  GAAGAAACATGCTCTAGGAAGAACACGAAGTAGGGCAATTTCATAGGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACATGCTCTAGGAAGAACACGAAGTAGGGCAATTTCATAGGACG  350

seq1  AGAAAATGGAATTATTTTACCAGCATACTTATACTAAAAAAAGTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGAATTATTTTACCAGCATACTTATACTAAAAAAAGTATTAAA  400

seq1  GGGTGTTCTCCAGACAGAAGGAAAACAATTCTAGATGGAAAGGCTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTCCAGACAGAAGGAAAACAATTCTAGATGGAAAGGCTGGAGA  450

seq1  TAAAGATTTTTAAAGTGACAAAGATCAAAACTCATAGGCCAGAGTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTTTTAAAGTGACAAAGATCAAAACTCATAGGCCAGAGTCTGGA  500

seq1  GAGATGGCTCAGCAGTTAAGAGTACTGACTACTCTTTCAGAGGATCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCAGTTAAGAGTACTGACTACTCTTTCAGAGGATCTGGG  550

seq1  TTAAAGCCCCAGCATCCACACAGTGGCTCCAGTCCCAGGAGATCCCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCCAGCATCCACACAGTGGCTCCAGTCCCAGGAGATCCCATGC  600

seq1  CCTCTTCTTGCCTCTGAAGGCACTACACATAAGTGGTGCACACATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTGCCTCTGAAGGCACTACACATAAGTGGTGCACACATATATA  650

seq1  CACATAAGTGGTGCACACACATATGTGCAGGCCAAGCACCTGTGTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGTGGTGCACACACATATGTGCAGGCCAAGCACCTGTGTACATA  700

seq1  AAATAATAAATATTTTATACACGCTACAAAAACCATTTTAAGACATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAATATTTTATACACGCTACAAAAACCATTTTAAGACATAAAA  750

seq1  CATAGAAAAGTAAATTCATAGGCTTAGAG-AAGGGCTAAATGGAGTTAAT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATAGAAAAGTAAATTCATAGGCTTAGAGAAAGGGCTAAATGGAGTTAAT  800

seq1  TGTTACCTAGAGATTACTAGGGAAAATATAAGGCACCAATTATTTGTACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTAGAGATTACTAGGGAAAATATAAGGCACCAATTATTTGTACT  850

seq1  ATTAATA-TTATAATTTCTAAAAATATGAAAGAGCATATAACTTCTAAAC  898
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  ATTAATATTTATAATTTCTAAAAATATGAAAGAGCATATAACTTCT-AAC  899

seq1  TATGATCCATGACTGATCCTTTTTAAACTGTATTTTTCTTTTCTTTTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCCATGACTGATCCTTTTTAAACTGTATTTTTCTTTTCTTTTTTT  949

seq1  TTTTTTAGCATGCCTTGTAATTCATT-GTTGCTGAAAGCCAGAC-ATCAT  996
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TTTTTTAGCATGCCTTGTAATTCATTGGTTGCTGAAAGCCAGACAATCAT  999

seq1  GTTTT--CAAATAAAAGAAACTGAAAAAAAA--TTTACTGTGATATTTTA  1042
      |||||   ||||||||| |||||||||||||  |||||||||||||||||
seq2  GTTTTTCAAAATAAAAG-AACTGAAAAAAAAATTTTACTGTGATATTTTA  1048

seq1  TATTAACTT-GACAGGGAACCAAGCACCATTTACTGCTTGCTATATTTAT  1091
      ||||||||| ||||||||  | ||||||| ||||||||||||||||||||
seq2  TATTAACTTGGACAGGGA--CCAGCACCA-TTACTGCTTGCTATATTTAT  1095

seq1  AACTG-TCTCTGAGTTTTTCTA  1112
       |||| ||||||||||||||||
seq2  -ACTGTTCTCTGAGTTTTTCTA  1116

seq1: chr1_136206437_136207584
seq2: B6Ng01-187P13.g_64_1219 (reverse)

seq1  AATCACCCCTT---CACCCATGAGAGGT--CAAGCTGTTCAATAACA-TT  44
      |||||||||||   | || |||  ||||   |||||| ||||| ||| ||
seq2  AATCACCCCTTACACGCCAATGGAAGGTACGAAGCTGGTCAATTACATTT  50

seq1  TCAGTTTATTTGTAC--TAAGGAGCTGATAGTGATTGGA-GGTGACAGAG  91
      ||||||||||  |||   ||| |||||| ||||||| || |||| |||| 
seq2  TCAGTTTATTGTTACCTAAAGAAGCTGA-AGTGATTTGAGGGTGCCAGA-  98

seq1  GTATTTCAGGATCTCAGAATGACCCAGGTCTACTCAGGTATCAGCTGTCT  141
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCAAGATCTCAGAATGACCCAGGTCTACTCAGGTATCAGCTGTCT  148

seq1  ACACCAGGGGTCCTC-AGGCGTCCTAATGCAGCGACCCTTTGCAGTTCTT  190
      ||||||||||||||| || ||| ||||||||||||||| |||||||||||
seq2  ACACCAGGGGTCCTCAAGTCGT-CTAATGCAGCGACCC-TTGCAGTTCTT  196

seq1  CACCTTGTGGTGACTCCCAA-CCATAAAATA-ACTTCATTGCTATTTCAT  238
      |||||||||||||||||||| |||||||||| || |||||||||||||||
seq2  CACCTTGTGGTGACTCCCAACCCATAAAATAGACGTCATTGCTATTTCAT  246

seq1  AACTGTAATTTGTTATTGTTATGTATCATAATATAACTATCTGATATCTG  288
      |||||||||||| || || |||||||||||||||||||||||||||||||
seq2  AACTGTAATTTG-TAATGGTATGTATCATAATATAACTATCTGATATCTG  295

seq1  ACCCCCAAAGCAACTGTGACCCACGGGTCGAG-AACTTCTGGCCTACATC  337
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCCCCAAAGCAACTGTGACCCACGGGTCGAGAAACTTCTGGCCTACATC  345

seq1  AATGAACAAGAGCAATTGTCCAAGGAGTAAGAAAAACAGAGCCCTTCCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAGAGCAATTGTCCAAGGAGTAAGAAAAACAGAGCCCTTCCTG  395

seq1  CCACCTCTGGAAGGTGGTGTGTAGTGATGTATAGACAACTTGCCAACTTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGGAAGGTGGTGTGTAGTGATGTATAGACAACTTGCCAACTTA  445

seq1  TGTCAACCTCAAGCCTGCTGAGCCAGAGGAGAGGCAGCCAGGGTATAGTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCTCAAGCCTGCTGAGCCAGAGGAGAGGCAGCCAGGGTATAGTG  495

seq1  GATCTGCAAAGGATGCCAGCCTGACTCTGGGGAATGGCTAGCTTCGAAGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAAAGGATGCCAGCCTGACTCTGGGGAATGGCTAGCTTCGAAGT  545

seq1  CCAGAGAATGACTGAATGTTGGCTGAAGGCTAGGGGAGAAAAAAAAGCAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAATGACTGAATGTTGGCTGAAGGCTAGGGGAGAAAAAAAAGCAC  595

seq1  AGAGTAGCCTGTACTTGAATAGCCAGTGTGCTTCCCCAAAGGCCAGGTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCCTGTACTTGAATAGCCAGTGTGCTTCCCCAAAGGCCAGGTCA  645

seq1  TCACTTGGGCAATTCTCCAGGTCCTTTATTAATGTTCCCACTCATGATGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGGCAATTCTCCAGGTCCTTTATTAATGTTCCCACTCATGATGT  695

seq1  CACTCGCCTCAAGAAGACTGCACTACAAGGCATTACCTCTACAGACAGCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCCTCAAGAAGACTGCACTACAAGGCATTACCTCTACAGACAGCA  745

seq1  AACAGGGACAGTTCAGTTTTGATAGCAACCCTCAAACACCTTTCCCATAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGACAGTTCAGTTTTGATAGCAACCCTCAAACACCTTTCCCATAT  795

seq1  CCTGCTAGATGTTTTCACATTGAGCTGTTCTGTTTTAAAAGGAAACTGCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGATGTTTTCACATTGAGCTGTTCTGTTTTAAAAGGAAACTGCA  845

seq1  CATGCTGATATATGTAAAATTGTACACCGAATAGAATATGTTTATTATCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGATATATGTAAAATTGTACACCGAATAGAATATGTTTATTATCA  895

seq1  AGCAGACAAATGAAGTTATCCTCTATAGTCCGCATCCAAGTGCAGAACTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAAATGAAGTTATCCTCTATAGTCCGCATCCAAGTGCAGAACTA  945

seq1  GGAGAGCCTCTGCCCTTTCTTTCCCCTGCGTCCTGCTCCCCACTGCCTGC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCTCTGCCCTTTCTTTCCCCTGCGTCCTGCTCCCCACTGCCTGC  995

seq1  CCACACACAGTTGCTATACCCAACTGTCTACCATCCTTCTACTACAAGAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACAGTTGCTATACCCAACTGTCTACCATCCTTCTACTACAAGAA  1045

seq1  AGAAGGCATTAGCCTGGTGGTGGTGGCTCATGCCTTTAATCCCAACACTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATTAGCCTGGTGGTGGTGGCTCATGCCTTTAATCCCAACACTT  1095

seq1  AATGGGAAGAGGCAGGTGGATCTCTGAGTTCAAAGGACAGTCTGGTCTAT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGAGGCAGGTGGATCTCTGAGTTCAAAGGACAGTCTGGTCTAT  1145

seq1  GGAGTGAATTC  1148
      |||||||||||
seq2  GGAGTGAATTC  1156