BAC Information

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BAC

Clone NameB6Ng01-188D04
Chromosome1 (Build37)
Map Location 36,497,484 - 36,658,752
singlet/doubletdoublet
Overlap geneLman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik
Downstream geneCox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188D04.bB6Ng01-188D04.g
ACCGA012566GA012567
length1,1441,096
definitionB6Ng01-188D04.b B6Ng01-188D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,657,613 - 36,658,752)(36,497,484 - 36,498,561)
sequence
gaattcttatatggatataatcctcagtgccaccaggaagcaggtcacca
cccttacttgcatcagcaaaggggtcgaaagagtggaggttctggatagc
ggacatacgatacgattccttttcttaccatcattgaacaggcaaaagag
atggcttctgtggaaggacgaccatcagagagatgagaggtagggtttcc
tgctttcgaggtcccaggatgctgaagctggagagctcctctgaatgttg
agcaagaggaactcagtgaccaccccctcagtgcagtgcatactctcccc
acacccaggtgggctacaggggtaggaacaataggggtgtggtgtccagc
tcaggtctgaaaagccacagcagtcatgggggtacttccctcctactctg
ggaaaggtactcctgtcaccatatggaagagtcccatgtggcagggactc
aggaccctcccaatccatggttgtattgttgagctgagagacaggtccct
agcttagtcaagcctgatatgaaggtagccccacccagccttgaagacca
ctgtagaactaccccctaactgactgtttctggacccttgactctcagaa
tctcagtggcatacttttgttgtaatttttgttgttgttgttttaagaca
gggtttctttgtatagtcctggatgtcctggaactcactacatagactag
gctggcctcaaactcttcctgcttccgcctcctgagtgctagaattaatg
acatgcacccaccagtatctggctataataaaagtttttaagcctctcct
tgtggaaaggtctgtcctagcagatgatgaggggaccctagacaagcagg
tcctctgtgcactctctgtttctctggctctgcttttctttctcccttaa
gcacctcctaccaccttaagcacttgcatataatgatattgtttctgtct
ttatgtcaggttgcttgagagtgaggccagcctggattcaacaggatcct
ccccaggaaggtgcccttggacattaagttgactacatctacaggtgagc
caagccttcctttcccaactcaccccaaacgactactcagtgctttaggt
ggtagcttccaccaagcatccacagagtgagccaactcaacccc
gaattcagccaagctgaggggcaagcctgagttcccaagagaacagatag
tagagttaagttaccgtcccccaaacctttgtgcccatggctaggaagca
taaatgtgccagaggcagatgctatctccttctgagttttgtaattgtgt
gccaaaacctcataaaaagggaggcgggggccgggagtggaggcgcacgc
cttcagtcccagcactcgggaggcagaggcaggtggatttctgagttcga
ggccagcctggtctacaaagtgagttccaggacagccaaggctacacaga
gaaaccctgtctcgaaaaacaaaaaaacaaaaccaaaaaaaaaaacaaca
acaaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaa
ggaaggaaggaagaaagaaagggatgcggggtgaggctggctaagtgcga
gacacagctgtcatgtctccaggagaaaccaggttgagtgcagtatttgg
tctcgggagacttctagttaaaatctgctgtgaagaaagaagggaagggt
tcagctgggtttggctgggttctgccaaaggctttccaagtagattgttc
tgggccttgagcaacacagtgcttcatcatgttcggtttttcgtttttaa
tttctgggccatcatccaaaagaactagtgttaggagtacagagccacag
tgagggggtggatgcgttcctactctgcagggagccctggtgtctccaac
aatctgctctattctgtcttctctgtttgagttatctcttctgctgtgac
atttagcttttcaggacaagcagaaagctgtcctgtagccagcaggtagt
acaatggccctgcaaaaagggcaggaccagagaagcccacgatgaataag
caggtagctgtagctaaattcttgggcctttgggtatcacaatgcaggtt
ttgatcatggtgattttttaagaagtggctctgaaacttcgatgcatgtt
ggaaatccaagttagctgaaatcgggtgggggaatggctcacgtggttta
attatcagccactaagggagccagggcagcagattcctctaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36657613_36658752
seq2: B6Ng01-188D04.b_47_1190 (reverse)

seq1  GGGGTTGAGTTGGCTCA--CTGTGGGTGCCTGGT-GAAGCTACCCACCTA  47
      |||||||||||||||||  |||||| ||| |||| ||||||| |||||||
seq2  GGGGTTGAGTTGGCTCACTCTGTGGATGCTTGGTGGAAGCTA-CCACCTA  49

seq1  AACCACTGAGTAAGTCGTTTGGGGTGAGTTGGGAAAGGAAAGCTTGGCTC  97
      || |||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AAGCACTGAGT-AGTCGTTTGGGGTGAGTTGGGAAAGGAAGGCTTGGCTC  98

seq1  ACCTTGTAGATGTAGTTCAACTTAATGTCCAAGGCCA-CTTCCTGGGGAG  146
      ||| ||||||||||| |||||||||||||||||| || ||||||||||||
seq2  ACC-TGTAGATGTAG-TCAACTTAATGTCCAAGGGCACCTTCCTGGGGAG  146

seq1  GATCCTG-TGAATCCAGGCTGGCCTCACTCTCAAGCACCCTGACAT-AAG  194
      ||||||| ||||||||||||||||||||||||||||| |||||||| |||
seq2  GATCCTGTTGAATCCAGGCTGGCCTCACTCTCAAGCAACCTGACATAAAG  196

seq1  ACAGAAACAATATCATTATATGCAAGTGCTTAAGGTGGTAGGAGGTGCTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACAATATCATTATATGCAAGTGCTTAAGGTGGTAGGAGGTGCTT  246

seq1  AA-GGAGAAAGAAAAGCAGAGCCAGAGAAACAGAGAGTGCACAGAGGACC  293
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAAGAAAAGCAGAGCCAGAGAAACAGAGAGTGCACAGAGGACC  296

seq1  TGCTTGTCTAGGGTCCCCTCATCATCTGCTAGGACAGACC-TTCCACAAG  342
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTTGTCTAGGGTCCCCTCATCATCTGCTAGGACAGACCTTTCCACAAG  346

seq1  GAGAGGCTTAAAAACTTTTATTATAGCCAGATACTGGTGGGTGCATGTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTTAAAAACTTTTATTATAGCCAGATACTGGTGGGTGCATGTCA  396

seq1  TTAATTCTAGCACTCAGGAGGCGGAAGCAGGAAGAGTTTGAGGCCAGCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTAGCACTCAGGAGGCGGAAGCAGGAAGAGTTTGAGGCCAGCCT  446

seq1  AGTCTATGTAGTGAGTTCCAGGACATCCAGGACTATACAAAGAAACCCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTAGTGAGTTCCAGGACATCCAGGACTATACAAAGAAACCCTG  496

seq1  TCTTAAAACAACAACAACAAAAATTACAACAAAAGTATGCCACTGAGATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACAACAACAACAAAAATTACAACAAAAGTATGCCACTGAGATT  546

seq1  CTGAGAGTCAAGGGTCCAGAAACAGTCAGTTAGGGGGTAGTTCTACAGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCAAGGGTCCAGAAACAGTCAGTTAGGGGGTAGTTCTACAGTG  596

seq1  GTCTTCAAGGCTGGGTGGGGCTACCTTCATATCAGGCTTGACTAAGCTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGGCTGGGTGGGGCTACCTTCATATCAGGCTTGACTAAGCTAG  646

seq1  GGACCTGTCTCTCAGCTCAACAATACAACCATGGATTGGGAGGGTCCTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTCTCTCAGCTCAACAATACAACCATGGATTGGGAGGGTCCTGA  696

seq1  GTCCCTGCCACATGGGACTCTTCCATATGGTGACAGGAGTACCTTTCCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCCACATGGGACTCTTCCATATGGTGACAGGAGTACCTTTCCCA  746

seq1  GAGTAGGAGGGAAGTACCCCCATGACTGCTGTGGCTTTTCAGACCTGAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAGGGAAGTACCCCCATGACTGCTGTGGCTTTTCAGACCTGAGC  796

seq1  TGGACACCACACCCCTATTGTTCCTACCCCTGTAGCCCACCTGGGTGTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCACACCCCTATTGTTCCTACCCCTGTAGCCCACCTGGGTGTGG  846

seq1  GGAGAGTATGCACTGCACTGAGGGGGTGGTCACTGAGTTCCTCTTGCTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTATGCACTGCACTGAGGGGGTGGTCACTGAGTTCCTCTTGCTCA  896

seq1  ACATTCAGAGGAGCTCTCCAGCTTCAGCATCCTGGGACCTCGAAAGCAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAGGAGCTCTCCAGCTTCAGCATCCTGGGACCTCGAAAGCAGG  946

seq1  AAACCCTACCTCTCATCTCTCTGATGGTCGTCCTTCCACAGAAGCCATCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTACCTCTCATCTCTCTGATGGTCGTCCTTCCACAGAAGCCATCT  996

seq1  CTTTTGCCTGTTCAATGATGGTAAGAAAAGGAATCGTATCGTATGTCCGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCTGTTCAATGATGGTAAGAAAAGGAATCGTATCGTATGTCCGC  1046

seq1  TATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTG  1096

seq1  GTGACCTGCTTCCTGGTGGCACTGAGGATTATATCCATATAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGCTTCCTGGTGGCACTGAGGATTATATCCATATAAGAATTC  1144

seq1: chr1_36497484_36498561
seq2: B6Ng01-188D04.g_65_1160

seq1  GAATTCAGCCAAGCTGAGGGGCAAGCCTGAGTTCCCAAGAGAACAGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAAGCTGAGGGGCAAGCCTGAGTTCCCAAGAGAACAGATAG  50

seq1  TAGAGTTAAGTTACCGTCCCCCAAACCTTTGTGCCCATGGCTAGGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAAGTTACCGTCCCCCAAACCTTTGTGCCCATGGCTAGGAAGCA  100

seq1  TAAATGTGCCAGAGGCAGATGCTATCTCCTTCTGAGTTTTGTAATTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGCCAGAGGCAGATGCTATCTCCTTCTGAGTTTTGTAATTGTGT  150

seq1  GCCAAAACCTCATAAAAAGGGAGGCGGGGGCCGGGAGTGGAGGCGCACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACCTCATAAAAAGGGAGGCGGGGGCCGGGAGTGGAGGCGCACGC  200

seq1  CTTCAGTCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA  250

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGA  300

seq1  GAAACCCTGTCTCGAAAAACAAAAAAACAAAACCAAAAAAAAAAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAACAAAAAAACAAAACCAAAAAAAAAAACAACA  350

seq1  ACAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAA  400

seq1  GGAAGGAAGGAAGAAAGAAAGGGATGCGGGGTGAGGCTGGCTAAGTGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGAAAGAAAGGGATGCGGGGTGAGGCTGGCTAAGTGCGA  450

seq1  GACACAGCTGTCATGTCTCCAGGAGAAACCAGGTTGAGTGCAGTATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTGTCATGTCTCCAGGAGAAACCAGGTTGAGTGCAGTATTTGG  500

seq1  TCTCGGGAGACTTCTAGTTAAAATCTGCTGTGAAGAAAGAAGGGAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAGACTTCTAGTTAAAATCTGCTGTGAAGAAAGAAGGGAAGGGT  550

seq1  TCAGCTGGGTTTGGCTGGGTTCTGCCAAAGGCTTTCCAAGTAGATTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGGTTTGGCTGGGTTCTGCCAAAGGCTTTCCAAGTAGATTGTTC  600

seq1  TGGGCCTTGAGCAACACAGTGCTTCATCATGTTCGGTTTTTCGTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGAGCAACACAGTGCTTCATCATGTTCGGTTTTTCGTTTTTAA  650

seq1  TTTCTGGGCCATCATCCAAAAGAACTAGTGTTAGGAGTACAGAGCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCCATCATCCAAAAGAACTAGTGTTAGGAGTACAGAGCCACAG  700

seq1  TGAGGGGGTGGATGCGTTCCTACTCTGCAGGGAGCCCTGGTGTCTCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGTGGATGCGTTCCTACTCTGCAGGGAGCCCTGGTGTCTCCAAC  750

seq1  AATCTGCTCTATTCTGTCTTCTCTG-TTGAGTTATCTC-TCTGCTGTGAC  798
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AATCTGCTCTATTCTGTCTTCTCTGTTTGAGTTATCTCTTCTGCTGTGAC  800

seq1  ATTTAGC-TTTCAGGACAAGCAGAAAGCTGTCCTGTAGCCAGCAGGTAGT  847
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTTTTCAGGACAAGCAGAAAGCTGTCCTGTAGCCAGCAGGTAGT  850

seq1  ACAATGGCCCTGCAAAAAGGGCAGGACCAGAGAAGCCCACGATGAATAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCCCTGCAAAAAGGGCAGGACCAGAGAAGCCCACGATGAATAAG  900

seq1  CAGGTAGCTGTAGCT-AATTCTTGG--CCTTGGGTATCACAATGCA-GTT  943
      ||||||||||||||| |||||||||  | ||||||||||||||||| |||
seq2  CAGGTAGCTGTAGCTAAATTCTTGGGCCTTTGGGTATCACAATGCAGGTT  950

seq1  TTGATCATGGTGA-TTTTTAAG-AGTGGCTCTGAAACTTCGATGCATGTT  991
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TTGATCATGGTGATTTTTTAAGAAGTGGCTCTGAAACTTCGATGCATGTT  1000

seq1  TGAAATCCCAG-TAGCTG-AATC-GGTGGGG--ATGGCTCACGT-GTTTA  1035
       ||||||| || |||||| |||| |||||||  ||||||||||| |||||
seq2  GGAAATCCAAGTTAGCTGAAATCGGGTGGGGGAATGGCTCACGTGGTTTA  1050

seq1  A-TATCAG-CACT-AGGGAGGCAGGGGCAGGCAGAT--CTCTAAATTT  1078
      | |||||| |||| |||||| || ||||| ||||||  ||||||||||
seq2  ATTATCAGCCACTAAGGGAGCCA-GGGCA-GCAGATTCCTCTAAATTT  1096