BAC Information

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BAC

Clone NameB6Ng01-188F07
Chromosome1 (Build37)
Map Location 190,829,939 - 190,993,660
singlet/doubletdoublet
Overlap geneKctd3
Upstream geneEsrrg, 9330162B11Rik, Ush2a
Downstream geneKcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188F07.bB6Ng01-188F07.g
ACCGA012656GA012657
length1,139474
definitionB6Ng01-188F07.b B6Ng01-188F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,829,939 - 190,831,065)(190,993,181 - 190,993,660)
sequence
gaattcagttcccagcatccatgtcaggtggctctcaacaaaacttacca
cacctgtaatccccgctctaagggaccctttctttggcctccacctgcac
tcacacatacaagtaagacagaccaatcttttctaaagtgacaatataac
ttagttgtttgtcataaagctatattctcttgaatgcctggaaggaaata
tgtgagccatccacagagaaaccagggttaaggtttgccacgagcaccat
tctgcttctctgtagtaacactgcccacgccttttgtggactatttcact
ttcacataccaggtcacttgcaataggttcctgtaatcgtaggtgggcag
ggaagacacactatttacactagatgaggtcatttgcacaggacctagta
agtataaaatgcagcggaagtcatttgcatatgacctgctacttaaggaa
tgcactagaggtgcaaggtctccaactgttaaaactttgctttggaggta
aaaggtgacaaagcaggaagaccaccccaagttctccagcactcagagag
cccattgtttcacaactgttaatttgtatttttaaataacaaaagtgtta
cacgtttaaaatcttaagacattgaaaactagccttcccaggacaacaga
atagcctgcgcattagaacccccctctccctctattcttactatgcctta
aacccaagcttccctcaactagtaggggcaatatccttttctgagaagag
tcatgtgtaagtcacggcaaatacaaaaatgggtttttggttttgttgct
tgtttgggtttgtttgtttgttttgccaacaaacttccactccaacaaaa
tgggagtggaaaggtctaatagagactaaagactcaacagtccaaccggg
ttgctcctatgcaacaactcaagcccttagcacgggagacgacaaccagc
tgcaacgctgacagctcggttgtcagcatgccttcatcccttcagagggc
ccaagtcacttgggtcaggcagcccaccattgccaactgtgttctgtggc
cttacttaacacataggaccggggggattaaagactggagtttaacagtc
ttaatacacctcgaacctggaacaggactctctggaaga

cggtggtccaggctcttctgatgccttttgcattcagggttgacactata
atcatattttctcatccaggtcccagcagacaagtaatgttcaagacctc
agagtgaattagaggagacgtggaaaagataattgggttggtggcgacta
aatggcttttaaaggcaccaaggtgttgacgggggagaaggatcccagtg
agttaagcaagactcaggtcacccaggaaatcgcccttactcatttgcag
cttttcactttctaatttgataatttaagaaaagattctagagctgggcg
tggtggcacatgcctttaatcccagcactccggaggcagaggcaggcaga
tttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcc
agggctatacagagaaaccctgtctcggaaaaaagaagaagaagaagaag
gagaaggaggaggaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190829939_190831065
seq2: B6Ng01-188F07.b_48_1186

seq1  GAATTCAGTTCCCAGCATCCATGTCAGGTGGCTCTCAACAAAACTTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGCATCCATGTCAGGTGGCTCTCAACAAAACTTACCA  50

seq1  CACCTGTAATCCCCGCTCTAAGGGACCCTTTCTTTGGCCTCCACCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAATCCCCGCTCTAAGGGACCCTTTCTTTGGCCTCCACCTGCAC  100

seq1  TCACACATACAAGTAAGACAGACCAATCTTTTCTAAAGTGACAATATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATACAAGTAAGACAGACCAATCTTTTCTAAAGTGACAATATAAC  150

seq1  TTAGTTGTTTGTCATAAAGCTATATTCTCTTGAATGCCTGGAAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTTGTCATAAAGCTATATTCTCTTGAATGCCTGGAAGGAAATA  200

seq1  TGTGAGCCATCCACAGAGAAACCAGGGTTAAGGTTTGCCACGAGCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCATCCACAGAGAAACCAGGGTTAAGGTTTGCCACGAGCACCAT  250

seq1  TCTGCTTCTCTGTAGTAACACTGCCCACGCCTTTTGTGGACTATTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCTGTAGTAACACTGCCCACGCCTTTTGTGGACTATTTCACT  300

seq1  TTCACATACCAGGTCACTTGCAATAGGTTCCTGTAATCGTAGGTGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATACCAGGTCACTTGCAATAGGTTCCTGTAATCGTAGGTGGGCAG  350

seq1  GGAAGACACACTATTTACACTAGATGAGGTCATTTGCACAGGACCTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACACTATTTACACTAGATGAGGTCATTTGCACAGGACCTAGTA  400

seq1  AGTATAAAATGCAGCGGAAGTCATTTGCATATGACCTGCTACTTAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAATGCAGCGGAAGTCATTTGCATATGACCTGCTACTTAAGGAA  450

seq1  TGCACTAGAGGTGCAAGGTCTCCAACTGTTAAAACTTTGCTTTGGAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAGAGGTGCAAGGTCTCCAACTGTTAAAACTTTGCTTTGGAGGTA  500

seq1  AAAGGTGACAAAGCAGGAAGACCACCCCAAGTTCTCCAGCACTCAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGACAAAGCAGGAAGACCACCCCAAGTTCTCCAGCACTCAGAGAG  550

seq1  CCCATTGTTTCACAACTGTTAATTTGTATTTTTAAATAACAAAAGTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTTTCACAACTGTTAATTTGTATTTTTAAATAACAAAAGTGTTA  600

seq1  CACGTTTAAAATCTTAAGACATTGAAAACTAGCCTTCCCAGGACAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTAAAATCTTAAGACATTGAAAACTAGCCTTCCCAGGACAACAGA  650

seq1  ATAGCCTGCGCATTAGAACCCCCCTCTCCCTCTATTCTTACTATGCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGCGCATTAGAACCCCCCTCTCCCTCTATTCTTACTATGCCTTA  700

seq1  AACCCAAGCTTCCCTCAACTAGTAGGGGCAATATCCTTTTCTGAGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGCTTCCCTCAACTAGTAGGGGCAATATCCTTTTCTGAGAAGAG  750

seq1  TCATGTGTAAGTCACGGCAAATACAAAAATGGGTTTTTGGTTTTGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTAAGTCACGGCAAATACAAAAATGGGTTTTTGGTTTTGTTGCT  800

seq1  TGTTT-GGTTTGTTTGTTTGTTTTGCCAACAAACTTCCACTCCAACAAAA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGTTTGTTTGTTTGTTTTGCCAACAAACTTCCACTCCAACAAAA  850

seq1  TGGGAGTGG-AAGGTCTAATAGAGACTAAAGACTCAACAGTCCAACC-GG  897
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TGGGAGTGGAAAGGTCTAATAGAGACTAAAGACTCAACAGTCCAACCGGG  900

seq1  TTGCTCCTATGCAACAACTCAAGCCC-TAGCACGGGAGACGACAACCAGC  946
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCTCCTATGCAACAACTCAAGCCCTTAGCACGGGAGACGACAACCAGC  950

seq1  TGCAACGCTGACAGCTCGG-TGTCAGCATGCC-TCAACCCTCCAGAGGCC  994
      ||||||||||||||||||| |||||||||||| ||| |||| |||||| |
seq2  TGCAACGCTGACAGCTCGGTTGTCAGCATGCCTTCATCCCTTCAGAGGGC  1000

seq1  CCAAGTCACTT-GGTCAGGCAGGCCCACCA-TGCCAACTGTGTTCCTGTG  1042
      ||||||||||| ||||||||| |||||||| ||||||||||||| |||||
seq2  CCAAGTCACTTGGGTCAGGCA-GCCCACCATTGCCAACTGTGTT-CTGTG  1048

seq1  GCCTTACTTACACCATAGGAACCCGGGGGAATAAAGACTGAGTTTTAACA  1092
      ||||||||||   |||||| ||| |||||| |||||||||   |||||||
seq2  GCCTTACTTAACACATAGG-ACCGGGGGGATTAAAGACTGGAGTTTAACA  1097

seq1  GTCT--ATACA-CTCG-ACCTGGAACCAGACTCT---GAAGA  1127
      ||||  ||||| |||| |||||||||  ||||||   |||||
seq2  GTCTTAATACACCTCGAACCTGGAACAGGACTCTCTGGAAGA  1139


seq1: chr1_190993181_190993660
seq2: B6Ng01-188F07.g_66_545 (reverse)

seq1  CTCCTCCTCCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTCTTTTTTCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTCTTTTTTCCGA  50

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  100

seq1  CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGTGC  150

seq1  TGGGATTAAAGGCATGTGCCACCACGCCCAGCTCTAGAATCTTTTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCATGTGCCACCACGCCCAGCTCTAGAATCTTTTCTTAA  200

seq1  ATTATCAAATTAGAAAGTGAAAAGCTGCAAATGAGTAAGGGCGATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAATTAGAAAGTGAAAAGCTGCAAATGAGTAAGGGCGATTTCCT  250

seq1  GGGTGACCTGAGTCTTGCTTAACTCACTGGGATCCTTCTCCCCCGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCTGAGTCTTGCTTAACTCACTGGGATCCTTCTCCCCCGTCAAC  300

seq1  ACCTTGGTGCCTTTAAAAGCCATTTAGTCGCCACCAACCCAATTATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGCCTTTAAAAGCCATTTAGTCGCCACCAACCCAATTATCTTT  350

seq1  TCCACGTCTCCTCTAATTCACTCTGAGGTCTTGAACATTACTTGTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTCTCCTCTAATTCACTCTGAGGTCTTGAACATTACTTGTCTGCT  400

seq1  GGGACCTGGATGAGAAAATATGATTATAGTGTCAACCCTGAATGCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGATGAGAAAATATGATTATAGTGTCAACCCTGAATGCAAAAG  450

seq1  GCATCAGAAGAGCCTGGACCACCGGAATTC  480
      ||||||||||||||||||||||||||||||
seq2  GCATCAGAAGAGCCTGGACCACCGGAATTC  480


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