BAC Information

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BAC

Clone NameB6Ng01-188J17
Chromosome1 (Build37)
Map Location 110,799,819 - 110,800,968
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J17.bB6Ng01-188J17.g
ACCGA012865GA012866
length1,1401,191
definitionB6Ng01-188J17.b B6Ng01-188J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatgagatggcaaatgtgtgctttagcatggctgtacttcaat
taagagaagttatgggtttacgaaaaccaaactgcactccctaaaagatt
catattcttttatcatgattaaatcataaagttatcataaggaaaatagc
agtataattcatgtcagtcaaagagtttttgttcatttttttgccttttt
tcacctgaattacattatagaaaataaaatcattatggtactagatttgt
tttatgtattcctgtttttgccactatacaattatgctcttcaaaaagct
agattataactaatgttttcatatttatcctataaggcattttctcagtc
tgtgcacattagctatgatatccatcttctcccagctgaaaatcttaatg
tagatatattcttttcagctactgcagttgtctcctttagctaataatgg
taaaaaatgttatttttcagttgacatgaggaaagcactacttacaaata
taaaagtctatcttcaagggggataaacaaaactatgttcttccagggaa
agaagctatataagataatagggaattgagttttacccttaaacttttca
aaaatttgacatcaatgcatttttaaatattatgaaaaagaaatggcaat
tcatacatttcttttccttccccttctctgtttccttcacacaacctggg
tcctttcatctttgcattctgcacctatgtttgcatgcactgcagactaa
gcaattgctatccttctaacaggcacagcactatacactatacactatta
agtattattcttagcttaaaattatttaaacgtctacttactagaccgtc
caaagtgatcaatgacatttcagctttgaacttaagaacagctttatcac
tcttgtgtaatccaagcagtggaacagggaaaggttcagaaatacaacaa
ggggaaataactctaacactctagcccttattctggaaataagttacttc
agttcacatactctaaacatgatatgcatttgtttcagacaagaccaaag
attgagagagtaagaaaaggtataataaaaacatgtgataagaataaatg
tgacgaatacataggatggtaccttggggagggaaaagac

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatataatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaagc
atagaagtggatgctcacagtcggctattggatggatcacatggccccca
atgaaggagctagagaaagtaccaagaagctaaagggatctgcaacacta
tagtgacaacattatgactacccagtaccccggagctctgactctagctg
catatggcatcaaagatgtcttagtcggtcatcacttggaaagaagagtc
attgacactgccaaccttttatatgccagtacaggctacgctagggccat
aatgggaagtgagttgcgtcaagggatgtaacggcattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_110799819_110800968
seq2: B6Ng01-188J17.b_46_1185 (reverse)

seq1  GTCTTTTCCCTCCCCAAGTTCCCAATTCTATGTA-TCGTCACATGTATTC  49
      |||||||||||||||||| | || || ||||||| ||||||||| |||||
seq2  GTCTTTTCCCTCCCCAAGGTACC-ATCCTATGTATTCGTCACATTTATTC  49

seq1  TTATCACATGGTTTTTATTATACCTTTTTCTTTACT-TCTCCTTCAAAAT  98
      ||||||||| ||||||||||||||||||   ||||| ||||      |||
seq2  TTATCACAT-GTTTTTATTATACCTTTT--CTTACTCTCTC------AAT  90

seq1  CTTTGGTCTTGTCTTGAAACAAATGCATATCATGTTTAGAGTATGTGAAC  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTGTC-TGAAACAAATGCATATCATGTTTAGAGTATGTGAAC  139

seq1  TTGAAGTAACTTATTTCCAGAATAAGGGCTAGAGTGTTAGAGTTATTTCC  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGAAGTAACTTATTTCCAGAATAAGGGCTAGAGTGTTAGAGTTATTTCC  188

seq1  CCTTGTTGTATTTCTGAACCTTTCCCTGTTCCACTGCTTGGATTACACAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGTATTTCTGAACCTTTCCCTGTTCCACTGCTTGGATTACACAA  238

seq1  GAGTGATAAAGCTGTTCTTAAGTTCAAAGCTGAAATGTCATTGATCACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATAAAGCTGTTCTTAAGTTCAAAGCTGAAATGTCATTGATCACTT  288

seq1  TGGACGGTCTAGTAAGTAGACGTTTAAATAATTTTAAGCTAAGAATAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGTCTAGTAAGTAGACGTTTAAATAATTTTAAGCTAAGAATAATA  338

seq1  CTTAATAGTGTATAGTGTATAGTGCTGTGCCTGTTAGAAGGATAGCAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGTGTATAGTGTATAGTGCTGTGCCTGTTAGAAGGATAGCAATT  388

seq1  GCTTAGTCTGCAGTGCATGCAAACATAGGTGCAGAATGCAAAGATGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCTGCAGTGCATGCAAACATAGGTGCAGAATGCAAAGATGAAAG  438

seq1  GACCCAGGTTGTGTGAAGGAAACAGAGAAGGGGAAGGAAAAGAAATGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGTTGTGTGAAGGAAACAGAGAAGGGGAAGGAAAAGAAATGTAT  488

seq1  GAATTGCCATTTCTTTTTCATAATATTTAAAAATGCATTGATGTCAAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCATTTCTTTTTCATAATATTTAAAAATGCATTGATGTCAAATT  538

seq1  TTTGAAAAGTTTAAGGGTAAAACTCAATTCCCTATTATCTTATATAGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGTTTAAGGGTAAAACTCAATTCCCTATTATCTTATATAGCTT  588

seq1  CTTTCCCTGGAAGAACATAGTTTTGTTTATCCCCCTTGAAGATAGACTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGGAAGAACATAGTTTTGTTTATCCCCCTTGAAGATAGACTTT  638

seq1  TATATTTGTAAGTAGTGCTTTCCTCATGTCAACTGAAAAATAACATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTAAGTAGTGCTTTCCTCATGTCAACTGAAAAATAACATTTTT  688

seq1  TACCATTATTAGCTAAAGGAGACAACTGCAGTAGCTGAAAAGAATATATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTATTAGCTAAAGGAGACAACTGCAGTAGCTGAAAAGAATATATC  738

seq1  TACATTAAGATTTTCAGCTGGGAGAAGATGGATATCATAGCTAATGTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAGATTTTCAGCTGGGAGAAGATGGATATCATAGCTAATGTGCA  788

seq1  CAGACTGAGAAAATGCCTTATAGGATAAATATGAAAACATTAGTTATAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGAAAATGCCTTATAGGATAAATATGAAAACATTAGTTATAAT  838

seq1  CTAGCTTTTTGAAGAGCATAATTGTATAGTGGCAAAAACAGGAATACATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTTTGAAGAGCATAATTGTATAGTGGCAAAAACAGGAATACATA  888

seq1  AAACAAATCTAGTACCATAATGATTTTATTTTCTATAATGTAATTCAGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCTAGTACCATAATGATTTTATTTTCTATAATGTAATTCAGGT  938

seq1  GAAAAAAGGCAAAAAAATGAACAAAAACTCTTTGACTGACATGAATTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGCAAAAAAATGAACAAAAACTCTTTGACTGACATGAATTATA  988

seq1  CTGCTATTTTCCTTATGATAACTTTATGATTTAATCATGATAAAAGAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTTTCCTTATGATAACTTTATGATTTAATCATGATAAAAGAATA  1038

seq1  TGAATCTTTTAGGGAGTGCAGTTTGGTTTTCGTAAACCCATAACTTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTTAGGGAGTGCAGTTTGGTTTTCGTAAACCCATAACTTCTCT  1088

seq1  TAATTGAAGTACAGCCATGCTAAAGCACACATTTGCCATCTCATCTGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAGTACAGCCATGCTAAAGCACACATTTGCCATCTCATCTGAAT  1138

seq1  TC  1150
      ||
seq2  TC  1140


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