BAC Information

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BAC

Clone NameB6Ng01-188K08
Chromosome1 (Build37)
Map Location 111,014,402 - 111,085,624
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188K08.bB6Ng01-188K08.g
ACCGA012891GA012892
length1,1061,155
definitionB6Ng01-188K08.b B6Ng01-188K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,014,402 - 111,015,510)(111,084,465 - 111,085,624)
sequence
gaattctttgtttagctctgtgccccatcttttaatgggattatttgatt
ttactggattccagctcctcgagttctctaatattgactattagttccct
gtctgattaagggttggtaaagatcctttcccaatctgttggtggcaaat
ttgtatgttttaattttatctggtactctgcctttgaaattcagaatatt
attgtcttggcaaattaatatataacattattagtttaaattttcatagt
atattcatttcagaaatatataaaaaaagatagatgtaagaagtatctag
tactcatataaccatttattttacctcttttggtagtgtgtatccaaaat
ttcagcacatgggtataaaacagactgactataagtccaaggctaagcag
gctttacaaatattaaaggcattttgagttacacaatgatattttacgta
tatatgcattcttatttttaagagcaaacacaaaatcattaaactgtttc
atgcagtggcttctctctcagatgtagtacctgtctgtacatctttaacg
taattattagctatcatataatgttagcatattacaacctgtatagatat
caagtaaaaattaagaaccaatgtgcacttgttttaatcattagcataga
aataatgataataattgcctttttcctcttgacaaataaaatttcctgtt
tagaatccaaatttcttatacagtgcttaaaagctttttggtgcataata
atacatcctgttatattgttttgcaacatacttttgatagactataattt
ctgccacattaattgatttctaggatatggggatattagagtaaatgaaa
aaaaaaagatttaagtattgcttatacttagccacagcttccaaagccaa
acctacccttcatgttcacagggttcatttaaattttggatgtctttctc
ataaatgtcttacagtcttaacttttgctaatccaaatgaggaacatatt
ttatcttgcttccatacattagcgatatcccattatcatgttacataggt
aaacatctacactctttcatgtcacccttgatagatactgctctcagctg
attttt

gaattcttgataagtattcatatgtgtttcactttttctatttctactgg
aaactctaactaatgcagatatttccattatttaaattctggaaccaact
tgtgtctaggggaaaaggaactatgaccaatagggcagaagtcattgtca
ggcatttgtcagtcattccccagcctatgttttgagataaggactctctc
tgaaccttgatgtcactgttttaagtagacagatttattagtcccaggag
taccccttaaccatgacctttatagggattatgtacatgctgagatgcca
ggacagtgagaatctaactttgaatcatcatgtttggacatcagacattt
tacctactgagacatcaataagtgcccaaagttgtacactttaaaaatgt
aattcattaatgaaaataattaaaatatttactttaaaatttttatttta
gtcaaattattaatattataccatgctttcttatgatatttattcttttc
tgagaatatagtatgcaacttattaaaataatattagttataattaataa
aagagcagtctagagagatagaacaacactggttactcctccagagcatc
caggtatcattctcagcatgctcatggcagcttagaatcatctgtaactc
cagtcccagggcttccagtgccatcttcgtcagccaatgggaaaaacatg
tttgttgtgcacagatatacatgcaatcaaagcatacaagcacataaaat
aaatgtaaaatagttccaaaatattaatttaaattaaattctaaaatata
ctctcttttaacagaacatagtctaaaatttaaagcataaatttaaggtg
acttcattgaaagaataatacttttttatatgaattactcttgtaaaact
tgaaatagttttacatttgtataattttcttgtatataaaatatattact
tcactattttattctattaatattaataaaatatttaattagaaaaaaat
tgactgttaaactgaatattcagcaggaaataagacaatcttctctgagt
agttttcaacactacgacataactagcctgaaaaataaaacaagaaccca
gaatatttattatatggtatatgactatagatttggaatgttactataga
ctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111014402_111015510
seq2: B6Ng01-188K08.b_46_1151

seq1  GAATTCTTTGTTTAGCTCTGTGCCCCATCTTTTAATGGGATTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTGCCCCATCTTTTAATGGGATTATTTGATT  50

seq1  TTACTGGATTCCAGCTCCTCGAGTTCTCTAATATTGACTATTAGTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATTCCAGCTCCTCGAGTTCTCTAATATTGACTATTAGTTCCCT  100

seq1  GTCTGATTAAGGGTTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTAAGGGTTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCAAAT  150

seq1  TTGTATGTTTTAATTTTATCTGGTACTCTGCCTTTGAAATTCAGAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTTTTAATTTTATCTGGTACTCTGCCTTTGAAATTCAGAATATT  200

seq1  ATTGTCTTGGCAAATTAATATATAACATTATTAGTTTAAATTTTCATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTGGCAAATTAATATATAACATTATTAGTTTAAATTTTCATAGT  250

seq1  ATATTCATTTCAGAAATATATAAAAAAAGATAGATGTAAGAAGTATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTTCAGAAATATATAAAAAAAGATAGATGTAAGAAGTATCTAG  300

seq1  TACTCATATAACCATTTATTTTACCTCTTTTGGTAGTGTGTATCCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATAACCATTTATTTTACCTCTTTTGGTAGTGTGTATCCAAAAT  350

seq1  TTCAGCACATGGGTATAAAACAGACTGACTATAAGTCCAAGGCTAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACATGGGTATAAAACAGACTGACTATAAGTCCAAGGCTAAGCAG  400

seq1  GCTTTACAAATATTAAAGGCATTTTGAGTTACACAATGATATTTTACGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAAATATTAAAGGCATTTTGAGTTACACAATGATATTTTACGTA  450

seq1  TATATGCATTCTTATTTTTAAGAGCAAACACAAAATCATTAAACTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATTCTTATTTTTAAGAGCAAACACAAAATCATTAAACTGTTTC  500

seq1  ATGCAGTGGCTTCTCTCTCAGATGTAGTACCTGTCTGTACATCTTTAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGGCTTCTCTCTCAGATGTAGTACCTGTCTGTACATCTTTAACG  550

seq1  TAATTATTAGCTATCATATAATGTTAGCATATTACAACCTGTATAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAGCTATCATATAATGTTAGCATATTACAACCTGTATAGATAT  600

seq1  CAAGTAAAAATTAAGAACCAATGTGCACTTGTTTTAATCATTAGCATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAAATTAAGAACCAATGTGCACTTGTTTTAATCATTAGCATAGA  650

seq1  AATAATGATAATAATTGCCTTTTTCCTCTTGACAAATAAAATTTCCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATAATAATTGCCTTTTTCCTCTTGACAAATAAAATTTCCTGTT  700

seq1  TAGAATCCAAATTTCTTATACAGTGCTTAAAAGCTTTTTGGTGCATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCAAATTTCTTATACAGTGCTTAAAAGCTTTTTGGTGCATAATA  750

seq1  ATACATCCTGTTATATTGTTTTGCAACATACTTTTGATAGACTATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCTGTTATATTGTTTTGCAACATACTTTTGATAGACTATAATTT  800

seq1  CTGCCACATTAATTGATTTCTAGGATATGGGGATATTAGAGTAAATG-AA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGCCACATTAATTGATTTCTAGGATATGGGGATATTAGAGTAAATGAAA  850

seq1  AAAAAAAGATTTAAGTATTGCTTATACTTAGCCACAGCTTCCAAAGCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATTTAAGTATTGCTTATACTTAGCCACAGCTTCCAAAGCCAA  900

seq1  ACCTACCCTTCATGTTCACAGGGTTCATTTAAATTTTGGATGTCTTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCCTTCATGTTCACAGGGTTCATTTAAATTTTGGATGTCTTTCTC  950

seq1  ATAAATGTCTTACAGTCTTAACTTTTGCTAATCCAAAATGAGGAACATA-  998
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ATAAATGTCTTACAGTCTTAACTTTTGCTAATCC-AAATGAGGAACATAT  999

seq1  TTTATCTTGCTTCCATACATTAGCGATATCCCCATTATCATGTTACATAG  1048
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTATCTTGCTTCCATACATTAGCGATAT-CCCATTATCATGTTACATAG  1048

seq1  TAAACCATCTACACTCCTTTCCATTGTCACCCTTGATAGATACTGCTCTC  1098
        || |||||||||| |||||   ||||||||||||||||||||||||||
seq2  GTAAACATCTACACT-CTTTC--ATGTCACCCTTGATAGATACTGCTCTC  1095

seq1  AGCTGATTTTT  1109
      |||||||||||
seq2  AGCTGATTTTT  1106


seq1: chr1_111084465_111085624
seq2: B6Ng01-188K08.g_68_1222 (reverse)

seq1  CAGAGTCTATAGT-ACATATCCATATGTATAGTACATATA-CATATAATA  48
      ||||||||||||| |||| |||| || |||||| |||||| |||||||||
seq2  CAGAGTCTATAGTAACAT-TCCAAATCTATAGT-CATATACCATATAATA  48

seq1  AATA-TCTGGTGTCTTGTTTATTTTTTCAGGCTAGTTTATTGGTTCGTAG  97
      |||| |||||  ||||||||  ||||||||||||| ||||    ||||||
seq2  AATATTCTGGGTTCTTGTTTTATTTTTCAGGCTAG-TTAT---GTCGTAG  94

seq1  TGTTGGAAAACTACTCAGAGAAGATTGGTCTTATTTCCTGCTGAATATTC  147
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTT-GAAAACTACTCAGAGAAGATT-GTCTTATTTCCTGCTGAATATTC  142

seq1  AGTTTAACAGTCAATTTTTTTCTAATTAAATATTTTATTAATATTAATAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACAGTCAATTTTTTTCTAATTAAATATTTTATTAATATTAATAG  192

seq1  AATAAAATAGTGAAGTAATATATTTTATATACAAGAAAATTATACAAATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAGTGAAGTAATATATTTTATATACAAGAAAATTATACAAATG  242

seq1  TAAAACTATTTCAAGTTTTACAAGAGTAATTCATATAAAAAAGTATTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATTTCAAGTTTTACAAGAGTAATTCATATAAAAAAGTATTATT  292

seq1  CTTTCAATGAAGTCACCTTAAATTTATGCTTTAAATTTTAGACTATGTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGAAGTCACCTTAAATTTATGCTTTAAATTTTAGACTATGTTC  342

seq1  TGTTAAAAGAGAGTATATTTTAGAATTTAATTTAAATTAATATTTTGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAGAGAGTATATTTTAGAATTTAATTTAAATTAATATTTTGGAA  392

seq1  CTATTTTACATTTATTTTATGTGCTTGTATGCTTTGATTGCATGTATATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTACATTTATTTTATGTGCTTGTATGCTTTGATTGCATGTATATC  442

seq1  TGTGCACAACAAACATGTTTTTCCCATTGGCTGACGAAGATGGCACTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAACAAACATGTTTTTCCCATTGGCTGACGAAGATGGCACTGGA  492

seq1  AGCCCTGGGACTGGAGTTACAGATGATTCTAAGCTGCCATGAGCATGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGGACTGGAGTTACAGATGATTCTAAGCTGCCATGAGCATGCTG  542

seq1  AGAATGATACCTGGATGCTCTGGAGGAGTAACCAGTGTTGTTCTATCTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATACCTGGATGCTCTGGAGGAGTAACCAGTGTTGTTCTATCTCT  592

seq1  CTAGACTGCTCTTTTATTAATTATAACTAATATTATTTTAATAAGTTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGCTCTTTTATTAATTATAACTAATATTATTTTAATAAGTTGCA  642

seq1  TACTATATTCTCAGAAAAGAATAAATATCATAAGAAAGCATGGTATAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATTCTCAGAAAAGAATAAATATCATAAGAAAGCATGGTATAATA  692

seq1  TTAATAATTTGACTAAAATAAAAATTTTAAAGTAAATATTTTAATTATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATTTGACTAAAATAAAAATTTTAAAGTAAATATTTTAATTATTT  742

seq1  TCATTAATGAATTACATTTTTAAAGTGTACAACTTTGGGCACTTATTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATGAATTACATTTTTAAAGTGTACAACTTTGGGCACTTATTGAT  792

seq1  GTCTCAGTAGGTAAAATGTCTGATGTCCAAACATGATGATTCAAAGTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTAGGTAAAATGTCTGATGTCCAAACATGATGATTCAAAGTTAG  842

seq1  ATTCTCACTGTCCTGGCATCTCAGCATGTACATAATCCCTATAAAGGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGTCCTGGCATCTCAGCATGTACATAATCCCTATAAAGGTCA  892

seq1  TGGTTAAGGGGTACTCCTGGGACTAATAAATCTGTCTACTTAAAACAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGGGGTACTCCTGGGACTAATAAATCTGTCTACTTAAAACAGTG  942

seq1  ACATCAAGGTTCAGAGAGAGTCCTTATCTCAAAACATAGGCTGGGGAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGGTTCAGAGAGAGTCCTTATCTCAAAACATAGGCTGGGGAATG  992

seq1  ACTGACAAATGCCTGACAATGACTTCTGCCCTATTGGTCATAGTTCCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAATGCCTGACAATGACTTCTGCCCTATTGGTCATAGTTCCTTT  1042

seq1  TCCCCTAGACACAAGTTGGTTCCAGAATTTAAATAATGGAAATATCTGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGACACAAGTTGGTTCCAGAATTTAAATAATGGAAATATCTGCA  1092

seq1  TTAGTTAGAGTTTCCAGTAGAAATAGAAAAAGTGAAACACATATGAATAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGAGTTTCCAGTAGAAATAGAAAAAGTGAAACACATATGAATAC  1142

seq1  TTATCAAGAATTC  1160
      |||||||||||||
seq2  TTATCAAGAATTC  1155


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