BAC Information

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BAC

Clone NameB6Ng01-188L18
Chromosome1 (Build37)
Map Location 174,725,441 - 174,886,443
singlet/doubletdoublet
Overlap geneApcs
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
Downstream geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188L18.bB6Ng01-188L18.g
ACCGA012955GA012956
length1,234990
definitionB6Ng01-188L18.b B6Ng01-188L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,885,237 - 174,886,443)(174,725,441 - 174,726,201)
sequence
gaattctaaatgtcaagacttgagttcaccaagaaaatatgagccagaaa
tttcacactctcaaagaagagcaactccaaagtggcttctaccacattca
gtcctgtgcaattgacctctgaaagctcaaccaaagaaatgtttacttgc
tgattgcagtaatcttttgggtgacttcaagaaaagacctgtgagtgaga
aaacaattagtttccactgtgatcaagaaaagtttttaagacaatgtgaa
gtatggaagaaaatataagttccattgttaagagggaaagagtgggcgat
gtatttgaagcctaactggtaagtatcttgaaaatcaccaaacaggcaat
ttgatgtgattatgagagtcacagaaaactagcctcttctttaaaggaga
gggtctataggctggaggtttggttgtctatcatgcatgaggacttggat
tcagtcaccgaagatgcatggagctgtcatgatggcacacatgcaggtag
agacagaaggactggaagttttaggtcatcctcaactatcttgtaagctc
aaggccagcagcctggaatgagagagacagtgacagagacagacagacag
acagacagacacacacatacacacacacacacacacacatacacacacac
aagacagagagacagagagactgtaaggatagcacatacagtgactactt
cactgttcctgtttcatttccagttttactgaatagatttctttttctca
tgctcactgatttgctgcctgttggcatcacgtgttcatgcttatgaaac
cattcactcaagtgtcactgaaggagtctccactactaaagctgtcagac
tgtttttcttccttttccttgttgttcggtttgacacgtctgaccctagc
tcctgcaaacattctctagccgtggtttccatgaccaccacactatgtat
ctgtcatcccttgtgcttatttagttactgtccatgaatctctttattct
gactgtaccatgaacataacctgctctgtgaattctactttgcttccgat
ttttcctagccattctttaaaatttcaattttcttctgctgtttcttatg
ttgaattgctttccacatatctatggtttacagcaaaattccttcccaaa
atatctctacttaaattccattcttaacgattgtaagtccttgaaatcca
gtgatgaatatttattataaattttattaaaaca
gaattcccgtgaccaaaatctcatacatggtcttgggttttttgttagat
ggtttatgtctcttggggggaagcattgtcagcccaagtagcacaaattc
atctaaattacatatatatatgtaatacatatacatatatatatatgtaa
tttagatgaatttgtatgtatatatatgtatatatacatacacacacaca
catatatatatataatagtttaagtaagtatataataataatttctgatt
cccttttcagatatcttggcactgctgatgaggccaagaaccccagatta
gatagaccatggacttcaaataaaaaagtctgctatttttatgctctgtg
aatatagaaataagataactcttaatatcatactgctatatatgcacaga
tcagtgcattgccttaactctcatcagagaaggctcttctttcagtaggc
tggaaagaagtaaaaatatgcatttaagatgattattgaaaggtgtgtgc
tgattgcagtcctttttgatgtttgcgttcttagtcgtactttgcgtttc
agtaattacagagtcatttgttatcttcctccagactcttggctgcttct
tccatcatcagtcgcaactcttgctttctgtatgctgtttgggactggtc
tgctggctatgatttatttcagcctgtttggaacaagaattgcattttta
ttctctttaaacaatggaagatagttttgctcttgttggtataataatat
aggttggcagttttggtcttttagaatttggagtgtatgggtcatggctt
tctcttgactttcaaagttttcattgagaaaagaaaagttgttactttga
ctggctttttcatttatataaaacctgtggtttttcttttgcagttttta
aacagtttttttttgttctgtgtatttagtgtttttactatatataatgg
ggcggtttccttttcttttcttttttttctactggctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174885237_174886443
seq2: B6Ng01-188L18.b_50_1283 (reverse)

seq1  TGTTT---TAAAAATTAT-ATAAA-ATTCATCA--TGATTTCAA-GACCT  42
      |||||   ||||| |||| ||||| ||||||||   |||||||| ||| |
seq2  TGTTTTAATAAAATTTATAATAAATATTCATCACTGGATTTCAAGGACTT  50

seq1  ACAAATGTTAAGAATG--AATTAAGT-TAGATA-TTTGGGA---GATATT  85
      ||||  ||||||||||  | ||||||  ||||| |||||||    || ||
seq2  ACAATCGTTAAGAATGGAATTTAAGTAGAGATATTTTGGGAAGGAATTTT  100

seq1  GCTGTAAA-CATAGATATGT-GAAAGCAA-TCAACAT-AGAAACAGCAG-  130
      |||||||| ||||||||||| |||||||| ||||||| ||||||||||| 
seq2  GCTGTAAACCATAGATATGTGGAAAGCAATTCAACATAAGAAACAGCAGA  150

seq1  AGAAAATTGAAA-TTTAAAGAATGGCTA-GAAAAATCGGGAGCAAAGTAG  178
      |||||||||||| ||||||||||||||| |||||||||| ||||||||||
seq2  AGAAAATTGAAATTTTAAAGAATGGCTAGGAAAAATCGGAAGCAAAGTAG  200

seq1  AATCCACAGAGCAGG-TATG-TCATGGTACAGTCAGAATAAAGAGATTCA  226
      ||| ||||||||||| |||| |||||||||||||||||||||||||||||
seq2  AATTCACAGAGCAGGTTATGTTCATGGTACAGTCAGAATAAAGAGATTCA  250

seq1  TGGACAGTAACTAAATAAGCAC-AGGGATGACAGATACATAGTGTGGT-G  274
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TGGACAGTAACTAAATAAGCACAAGGGATGACAGATACATAGTGTGGTGG  300

seq1  TCATGGAAACCACGGCTAGAGAATGTTTGCAGGAGCTAGGGTCAGACGTG  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAACCACGGCTAGAGAATGTTTGCAGGAGCTAGGGTCAGACGTG  350

seq1  TCAAACCGAACAACAAGG-AAAGGAAGAAAAACAGTCTGACAGCTTTAGT  373
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAACCGAACAACAAGGAAAAGGAAGAAAAACAGTCTGACAGCTTTAGT  400

seq1  AGTGGAGACTCCTTCAGTGACACTTGAGTGAATGGTTTCATAAGCATGAA  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGACTCCTTCAGTGACACTTGAGTGAATGGTTTCATAAGCATGAA  450

seq1  CACGTGATGCCAACAGGCAGCAAATCAGTGAGCATGAGAAAAAGAAATCT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGATGCCAACAGGCAGCAAATCAGTGAGCATGAGAAAAAGAAATCT  500

seq1  ATTCAGTAAAACTGGAAATGAAACAGGAACAGTGAAGTAGTCACTGTATG  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAAACTGGAAATGAAACAGGAACAGTGAAGTAGTCACTGTATG  550

seq1  TGCTATCCTTACAGTCTCTCTGTCTCTCTGTCTTGTGTGTGTGTATGTGT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCTTACAGTCTCTCTGTCTCTCTGTCTTGTGTGTGTGTATGTGT  600

seq1  GTGTGTGTGTGTGTGTATGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTCT  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTCT  650

seq1  GTCACTGTCTCTCTCATTCCAGGCTGCTGGCCTTGAGCTTACAAGATAGT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTCTCTCTCATTCCAGGCTGCTGGCCTTGAGCTTACAAGATAGT  700

seq1  TGAGGATGACCTAAAACTTCCAGTCCTTCTGTCTCTACCTGCATGTGTGC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGACCTAAAACTTCCAGTCCTTCTGTCTCTACCTGCATGTGTGC  750

seq1  CATCATGACAGCTCCATGCATCTTCGGTGACTGAATCCAAGTCCTCATGC  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACAGCTCCATGCATCTTCGGTGACTGAATCCAAGTCCTCATGC  800

seq1  ATGATAGACAACCAAACCTCCAGCCTATAGACCCTCTCCTTTAAAGAAGA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGACAACCAAACCTCCAGCCTATAGACCCTCTCCTTTAAAGAAGA  850

seq1  GGCTAGTTTTCTGTGACTCTCATAATCACATCAAATTGCCTGTTTGGTGA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTTTTCTGTGACTCTCATAATCACATCAAATTGCCTGTTTGGTGA  900

seq1  TTTTCAAGATACTTACCAGTTAGGCTTCAAATACATCGCCCACTCTTTCC  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGATACTTACCAGTTAGGCTTCAAATACATCGCCCACTCTTTCC  950

seq1  CTCTTAACAATGGAACTTATATTTTCTTCCATACTTCACATTGTCTTAAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACAATGGAACTTATATTTTCTTCCATACTTCACATTGTCTTAAA  1000

seq1  AACTTTTCTTGATCACAGTGGAAACTAATTGTTTTCTCACTCACAGGTCT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTTGATCACAGTGGAAACTAATTGTTTTCTCACTCACAGGTCT  1050

seq1  TTTCTTGAAGTCACCCAAAAGATTACTGCAATCAGCAAGTAAACATTTCT  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAAGTCACCCAAAAGATTACTGCAATCAGCAAGTAAACATTTCT  1100

seq1  TTGGTTGAGCTTTCAGAGGTCAATTGCACAGGACTGAATGTGGTAGAAGC  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAGCTTTCAGAGGTCAATTGCACAGGACTGAATGTGGTAGAAGC  1150

seq1  CACTTTGGAGTTGCTCTTCTTTGAGAGTGTGAAATTTCTGGCTCATATTT  1173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGAGTTGCTCTTCTTTGAGAGTGTGAAATTTCTGGCTCATATTT  1200

seq1  TCTTGGTGAACTCAAGTCTTGACATTTAGAATTC  1207
      ||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGAACTCAAGTCTTGACATTTAGAATTC  1234

seq1: chr1_174725441_174726201
seq2: B6Ng01-188L18.g_68_828

seq1  GAATTCCCGTGACCAAAATCTCATACATGGTCTTGGGTTTTTTGTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTGACCAAAATCTCATACATGGTCTTGGGTTTTTTGTTAGAT  50

seq1  GGTTTATGTCTCTTGGGGGGAAGCATTGTCAGCCCAAGTAGCACAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTCTCTTGGGGGGAAGCATTGTCAGCCCAAGTAGCACAAATTC  100

seq1  ATCTAAATTACATATATATATGTAATACATATACATATATATATATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATTACATATATATATGTAATACATATACATATATATATATGTAA  150

seq1  TTTAGATGAATTTGTATGTATATATATGTATATATACATACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGAATTTGTATGTATATATATGTATATATACATACACACACACA  200

seq1  CATATATATATATAATAGTTTAAGTAAGTATATAATAATAATTTCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATAATAGTTTAAGTAAGTATATAATAATAATTTCTGATT  250

seq1  CCCTTTTCAGATATCTTGGCACTGCTGATGAGGCCAAGAACCCCAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCAGATATCTTGGCACTGCTGATGAGGCCAAGAACCCCAGATTA  300

seq1  GATAGACCATGGACTTCAAATAAAAAAGTCTGCTATTTTTATGCTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACCATGGACTTCAAATAAAAAAGTCTGCTATTTTTATGCTCTGTG  350

seq1  AATATAGAAATAAGATAACTCTTAATATCATACTGCTATATATGCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAAATAAGATAACTCTTAATATCATACTGCTATATATGCACAGA  400

seq1  TCAGTGCATTGCCTTAACTCTCATCAGAGAAGGCTCTTCTTTCAGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATTGCCTTAACTCTCATCAGAGAAGGCTCTTCTTTCAGTAGGC  450

seq1  TGGAAAGAAGTAAAAATATGCATTTAAGATGATTATTGAAAGGTGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAGTAAAAATATGCATTTAAGATGATTATTGAAAGGTGTGTGC  500

seq1  TGATTGCAGTCCTTTTTGATGTTTGCGTTCTTAGTCGTACTTTGCGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAGTCCTTTTTGATGTTTGCGTTCTTAGTCGTACTTTGCGTTTC  550

seq1  AGTAATTACAGAGTCATTTGTTATCTTCCTCCAGACTCTTGGCTGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTACAGAGTCATTTGTTATCTTCCTCCAGACTCTTGGCTGCTTCT  600

seq1  TCCATCATCAGTCGCAACTCTTGCTTTCTGTATGCTGTTTGGGACTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATCAGTCGCAACTCTTGCTTTCTGTATGCTGTTTGGGACTGGTC  650

seq1  TGCTGGCTATGATTTATTTCAGCCTGTTTGGAACAAGAATTGCATTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTATGATTTATTTCAGCCTGTTTGGAACAAGAATTGCATTTTTA  700

seq1  TTCTCTTTAAACAATGGAAGATAGTTTTGCTCTTGTTGGTATAATAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAAACAATGGAAGATAGTTTTGCTCTTGTTGGTATAATAATAT  750

seq1  AGGTTGGCAGT  761
      |||||||||||
seq2  AGGTTGGCAGT  761