BAC Information

Click to search

BAC

Clone NameB6Ng01-188L21
Chromosome1 (Build37)
Map Location 110,928,759 - 111,094,091
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188L21.bB6Ng01-188L21.g
ACCGA012961GA012962
length1,101978
definitionB6Ng01-188L21.b B6Ng01-188L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,928,759 - 110,929,832)(111,093,111 - 111,094,091)
sequence
gaattccagggaggctttcagtctgttgggttagttgccctgcatgccac
agagcctccaggaggtctttggactttggtgtctgttgcccaatttgcat
atgcatggacaagctcctgggatgccttcaagctgtagtgttttcagggg
aacagacttgttggtgatcaatttttctgtttccttgtgtatagcagatc
tcctgggatgccagatatctcaggctgtagtgttaattgtcctgtgggga
atggatctcctgggatgtctcaggctgtggtgtcagttattctgaacgca
ccggatcttctgggctggctcaggttatggtgtctccatgggagacacca
tacagagcaatcaaatgctctgagtgcagcagatcttctgagatggttca
gggtatggtgtctcctgaggactagctagcagtctgccccagtttaaagg
gaagctaattatttttaatctgagtattttacatgctcatttaaccaaat
tttatcatcaattaagacaagaatacatgtagaaatcatgacccatcatg
ttttaattaaattaatcacatttagtatttaaatttcttattttactgag
gtaaaacttttctgaagcaaaggtttttcgaaattaatgatggatagtat
atttcccctttattttagtaaagaataattcttgttttatggatctaata
gactggcttcaatgtttcagtacaagtatccaattctgtcacctcttcaa
taccctgggtatagttcagactacctaccttttaattgcaagtcatcttt
ctgtacccttgcccccctaagcatatctcctttcatgggtagacaattgg
aagtgaaaagtcacagatttctagaaattagattgatacaatataaattg
agattcaaatttggggcaaggtttccctctttgtcttctgtacccctgga
attgtgagaagaataaaagggaaataataaaaattatatgctcatgtagt
gcctaaaatatttaagtgcctattattatcttttttgctgtcatttcctg
gttctgaagaactaagtattggcatgaccctttgaatcttcctaaacttt
t

gaattcagacaactgaagaaaatgtggtacagatttgttcttgtcacact
gtgaattatttgctatcacagtgtgttcatcacaattcaaagtatatgaa
tgaagcatgtgctattcacactgtgaagcatgtgctagcatcatgtgttc
atcatcatgtgagatatgtgttagcactatgtgcttatcatagaactagt
atgttagtaatatgtgtttatatgtgtttatcatagaaaagtttgtgata
tcaacttgtgtttgttacaacatgaggaatttaccagtgtcctcagtaga
tgcctttttcacctaaatactttttttttttttttttttttttttttttt
tttttttttttaaaaaaactaaaagctcttaagggaattgtgccctaacc
ccaaattatttcatttttttttttaaacttttccttctctaaacaaaaat
aatcagctgttgaattattatagccttgctaattattgttcctgttaaca
acataatgcaggatttgaaacaggccatttaatcccacattggctatttc
ctaatcactaaatttgaaaaattaaatagcacagtcctcaactcttttga
aattcttatgattaaatcaaataccatactgaaatgcttaaaacaaggct
gcttattatggggtatgaaggaatacccatttatacataaatgttcagga
ttttgaaatgcttaactgctatctctttaaaaaatatgcctcaattttag
gtgtgcaaattacagaaatcactgccaaaaataaaatgaaccagggaatg
aaatcttgctttgtttttctccaaattagtctactatgatagcaattatg
tcttccgtgatagcttatcatttctgtcttatatgctacacagtaacact
agacaagcacagacattcaaacttagaatccagatttcctccaatagagg
attggttcaggaaattgtggtcatttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_110928759_110929832
seq2: B6Ng01-188L21.b_48_1148

seq1  GAATTCCAGGGAGGCTTTCAGTCTGTTGGGTTAGTTGCCCTGCATGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGGCTTTCAGTCTGTTGGGTTAGTTGCCCTGCATGCCAC  50

seq1  AGAGCCTCCAGGAGGTCTTTGGACTTTGGTGTCTGTTGCCCAATTTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCCAGGAGGTCTTTGGACTTTGGTGTCTGTTGCCCAATTTGCAT  100

seq1  ATGCATGGACAAGCTCCTGGGATGCCTTCAAGCTGTAGTGTTTTCAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGACAAGCTCCTGGGATGCCTTCAAGCTGTAGTGTTTTCAGGGG  150

seq1  AACAGACTTGTTGGTGATCAATTTTTCTGTTTCCTTGTGTATAGCAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTTGTTGGTGATCAATTTTTCTGTTTCCTTGTGTATAGCAGATC  200

seq1  TCCTGGGATGCCAGATATCTCAGGCTGTAGTGTTAATTGTCCTGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATGCCAGATATCTCAGGCTGTAGTGTTAATTGTCCTGTGGGGA  250

seq1  ATGGATCTCCTGGGATGTCTCAGGCTGTGGTGTCAGTTATTCTGAACGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTCCTGGGATGTCTCAGGCTGTGGTGTCAGTTATTCTGAACGCA  300

seq1  CCGGATCTTCTGGGCTGGCTCAGGTTATGGTGTCTCCATGGGAGACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCTTCTGGGCTGGCTCAGGTTATGGTGTCTCCATGGGAGACACCA  350

seq1  TACAGAGCAATCAAATGCTCTGAGTGCAGCAGATCTTCTGAGATGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAATCAAATGCTCTGAGTGCAGCAGATCTTCTGAGATGGTTCA  400

seq1  GGGTATGGTGTCTCCTGAGGACTAGCTAGCAGTCTGCCCCAGTTTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGGTGTCTCCTGAGGACTAGCTAGCAGTCTGCCCCAGTTTAAAGG  450

seq1  GAAGCTAATTATTTTTAATCTGAGTATTTTACATGCTCATTTAACCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAATTATTTTTAATCTGAGTATTTTACATGCTCATTTAACCAAAT  500

seq1  TTTATCATCAATTAAGACAAGAATACATGTAGAAATCATGACCCATCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATCAATTAAGACAAGAATACATGTAGAAATCATGACCCATCATG  550

seq1  TTTTAATTAAATTAATCACATTTAGTATTTAAATTTCTTATTTTACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAAATTAATCACATTTAGTATTTAAATTTCTTATTTTACTGAG  600

seq1  GTAAAACTTTTCTGAAGCAAAGGTTTTTCGAAATTAATGATGGATAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTTTTCTGAAGCAAAGGTTTTTCGAAATTAATGATGGATAGTAT  650

seq1  ATTTCCCCTTTATTTTAGTAAAGAATAATTCTTGTTTTATGGATCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTTTATTTTAGTAAAGAATAATTCTTGTTTTATGGATCTAATA  700

seq1  GACTGGCTTCAATGTTTCAGTACAAGTATCCAATTCTGTCACCTCTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTCAATGTTTCAGTACAAGTATCCAATTCTGTCACCTCTTCAA  750

seq1  TACCCTGGGTATAGTTCAGACTACCTACCTTTTAATTGCAAGTCATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGGTATAGTTCAGACTACCTACCTTTTAATTGCAAGTCATCTTT  800

seq1  CTGTACCCTTG-CCCCCTAAGCATATCTCC-TTCATGGGTAGACAATTGG  848
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CTGTACCCTTGCCCCCCTAAGCATATCTCCTTTCATGGGTAGACAATTGG  850

seq1  AAGTG-AAAGTCACAGA-TTCTAG-AACTAGATTGATACAATATAAA-TG  894
      ||||| ||||||||||| |||||| || ||||||||||||||||||| ||
seq2  AAGTGAAAAGTCACAGATTTCTAGAAATTAGATTGATACAATATAAATTG  900

seq1  AGATTCAAA-TTGGGGCAAG--TTTCCTC-TTGTC-TCTGTA-CCCTGG-  937
      ||||||||| ||||||||||  || |||| ||||| |||||| |||||| 
seq2  AGATTCAAATTTGGGGCAAGGTTTCCCTCTTTGTCTTCTGTACCCCTGGA  950

seq1  ATTGTGAGAAGAAT-AAAGGGAAATAAT-AAAATTATATGCTCATGTAGT  985
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  ATTGTGAGAAGAATAAAAGGGAAATAATAAAAATTATATGCTCATGTAGT  1000

seq1  GC--TAAATATTT-AGTG-CTATTATTATCTTTTTTGCTGTCATTT-CTT  1030
      ||   |||||||| |||| ||||||||||||||||||||||||||| || 
seq2  GCCTAAAATATTTAAGTGCCTATTATTATCTTTTTTGCTGTCATTTCCTG  1050

seq1  GTTCTGA--GACTAAGTATT-GCATGACC--TTGAATCT--CTTAACTTT  1073
      |||||||   |||||||||| ||||||||  ||||||||  || ||||||
seq2  GTTCTGAAGAACTAAGTATTGGCATGACCCTTTGAATCTTCCTAAACTTT  1100

seq1  T  1074
      |
seq2  T  1101


seq1: chr1_111093111_111094091
seq2: B6Ng01-188L21.g_69_1046 (reverse)

seq1  GTAAATGTACCAC-ATTTCCTGAACCCATTCCTCTATTGAAGGAAATCTG  49
      ||||||| ||||| |||||||||| ||| |||||||||| ||||||||||
seq2  GTAAATG-ACCACAATTTCCTGAA-CCAATCCTCTATTGGAGGAAATCTG  48

seq1  GATTCTTATGTTTGAATGTCTGTGCTTGTCTAGTGTTACTGTGTAGCATA  99
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  GATTC-TAAGTTTGAATGTCTGTGCTTGTCTAGTGTTACTGTGTAGCATA  97

seq1  TAAGGACAGAAATGATAAGCTATCACAGAAGACATAATTGCTATCATAGT  149
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAA-GACAGAAATGATAAGCTATCACGGAAGACATAATTGCTATCATAGT  146

seq1  AGACTAATTTGGAGAAAAACAAAGCAAGATTTCATTCCCTGGTTCATTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATTTGGAGAAAAACAAAGCAAGATTTCATTCCCTGGTTCATTTT  196

seq1  ATTTTTTGGCAGTGATTTCTGTAATTTGCACACCTAAAATTGAGGCATAT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTTGGCAGTGATTTCTGTAATTTGCACACCTAAAATTGAGGCATAT  245

seq1  TTTATAAAGAGATAGCAGTTAAGCATTTCAAAATCCTGAACATTTATGTA  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGAGATAGCAGTTAAGCATTTCAAAATCCTGAACATTTATGTA  295

seq1  TAAATGGGTATTCCTTCATA-CCCACTATAAGCAGCCTTGTTTTAAGCAT  348
      |||||||||||||||||||| ||||  |||||||||||||||||||||||
seq2  TAAATGGGTATTCCTTCATACCCCATAATAAGCAGCCTTGTTTTAAGCAT  345

seq1  TTCAGTATGGTATCTGATTTAATCATAAGAATTTCAAAAGAGTTGAGGAC  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATGGTATTTGATTTAATCATAAGAATTTCAAAAGAGTTGAGGAC  395

seq1  TGTGCTATTTAATTTCTCAAATTTAGTGATTAGGAAATAGACAATGTGGG  448
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TGTGCTATTTAATTTTTCAAATTTAGTGATTAGGAAATAGCCAATGTGGG  445

seq1  ATTAAATGGCCTGTTTCAAATCCTGCATTATGTTGTTAACAGGAACAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGCCTGTTTCAAATCCTGCATTATGTTGTTAACAGGAACAATA  495

seq1  ATTAGCAAGGCTATAATAATTCAACAGCTGATTATTATTGTTTAGAGAAG  548
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTAGCAAGGCTATAATAATTCAACAGCTGATTATTTTTGTTTAGAGAAG  545

seq1  GAAAAGTTTAAAAAAATAAATGAAATAATTTGGTGTTATGGCACAATTCC  598
      |||||||||||||||| |||||||||||||||| |||| |||||||||||
seq2  GAAAAGTTTAAAAAAAAAAATGAAATAATTTGGGGTTAGGGCACAATTCC  595

seq1  CTTAAGAGCTATTAGTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA  648
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CTTAAGAGCTTTTAGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA  645

seq1  AAAAAAAAAAAAAGTATTTAGGTGAAAAAGGCATCTACTGAGGACACTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGTATTTAGGTGAAAAAGGCATCTACTGAGGACACTGG  695

seq1  TAAATTCCTCATGTTGTAACAAACACAAGTTGATATCACAAACTTTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTCATGTTGTAACAAACACAAGTTGATATCACAAACTTTTCTA  745

seq1  TGATAAACACATATAAACACATATTACTAACATACTAGTTCTATGATAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACACATATAAACACATATTACTAACATACTAGTTCTATGATAAG  795

seq1  CACATAGTGCTAACACATATCTCACATGATGATGAACACATGATGCTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTGCTAACACATATCTCACATGATGATGAACACATGATGCTAGC  845

seq1  ACATGCTTCACAGTGTGAATAGCACATGCTTCATTCATATACTTTGAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTCACAGTGTGAATAGCACATGCTTCATTCATATACTTTGAATT  895

seq1  GTGATGAACACACTGTGATAGCAAATAATTCACAGTGTGACAAGAACAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAACACACTGTGATAGCAAATAATTCACAGTGTGACAAGAACAAA  945

seq1  TCTGTACCACATTTTCTTCAGTTGTCTGAATTC  981
      |||||||||||||||||||||||||||||||||
seq2  TCTGTACCACATTTTCTTCAGTTGTCTGAATTC  978


| Home | SequenceCutter | Blast | Download |