BAC Information

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BAC

Clone NameB6Ng01-189N17
Chromosome1 (Build37)
Map Location 130,774,314 - 130,928,298
singlet/doubletdoublet
Overlap genenone
Upstream geneRab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N17.bB6Ng01-189N17.g
ACCGA013765GA013766
length1,0851,010
definitionB6Ng01-189N17.b B6Ng01-189N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,927,203 - 130,928,298)(130,774,314 - 130,775,294)
sequence
gaattcagtgcagggagctctaatgtgtaaggaacagtagagaggcaaga
actgaggggcagggtgtctgagagcaaaggaaagagaaggttcatatgag
aaacaggtgaaaggaaaaaagagaaggaagagcaggtacagttcggtgac
agaaatgaagagagtggagcacagggttctagggagagagcagagttcgt
gatgccaaatacaaaagactttcttagaattacaacatagcaaccaagtt
ctgggatctacactaagggcagagaaaagagctttgatggaagagcaaca
ccaaaccagattgcaaggagttgagaaaggagtggataaaaaacagaggg
gatgtctccaaggtaactagatagcagtctagcgccaatgtgtgttaaaa
tgcgtcaagttttcaggcaccagtttgtaacatcagcagcaaaactgagg
ccagagcccaggctcacagactccctcccagtggtcagggttctacagac
actagaagatgcaagtgtcttctgtgttcctttcttatcttcatcattac
tacagtacagctacacagctacgtggctcttgttttcgcggtcacgttct
gtgaaatcctgataaattcctgcctgtggagatgacagtttcatcactca
gagagctgaggaggcaacctgaggggcagttttccctcagttaattttaa
tcaacaatcagccttccacaatggatgagaagtgatgggaaccgggagta
ggaagtgataaaatggtcctgtactagtcaggagtaggtggtggctaatt
aaactccgacaggatcatgctacttaggaaagtagatttttctgttggac
tttccaccctctgctcccagacatggagttccgaaaggaaaacacaaagc
ccggagcccagctttgattatttaatttctttaattaatgacttggctag
atttatgcaaatttaaatttgagatggcacaaaacagagagagccacttg
agccctggacatgacctcagattccctcacagccagagatggattgaact
atgagattatttattagtaaaatataagccctgtc
gaattccagccttatgggaaaacagaagcagtcattcactcgctcactca
ttcctcaccaacaggattgtgaggataaagagacagttaggtaccattct
gcacagcagggtgggaaagagttgggaggggctgttcttagttccagagg
aaaggtaccatttgcaagtggtgctctgcaggctgggaaacaaggccaaa
gtgggagctagaggacactgatacccagcagggacttgagagtctggaca
gtctagcggtgtggtttgcagtaagcagagtttactatcagagacaatca
tctatctgctggttctgtgacccagtgggtagggtgcttgccatgaatgc
acagagccttgtatttgacccacccagcactgagttaactcagcatgatg
acacacatctgtattcacagcattcaagacatggaggatcaaaagttcat
ggtcatcgatagattatacagtgaattgagaccagcttggactataagag
gctatgccttaaaacgaaatcgaaacaaactaaaacaagtatccagcaac
acaaaacacaacaagctatagaaggccttcctttggaattccatggaccc
agtacttcttggggaatacaggcttggctgtgctgagctgagctgagttg
atgttcatgggtgaaatgcagtctgaagttataaaatagacacttttctt
tagggatggttgtggctcatatcctccccacactgtctgcttcccatccc
acccaccctgcctggcttacaagcccctgcttccttgtaaggcagggaga
tttggcagccaaaaactgtagtgtctagaacatttggccttacttgtggt
ggcctatgaatagctgttatttgtcttttctttcttaagggctgaaatgg
gttcttaaggctgtttagaaagaataaaggaaaatccaaggttccagttt
acctggctatattgtctattggggggccaccctaaaaacatttttaataa
atttctatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_130927203_130928298
seq2: B6Ng01-189N17.b_47_1131 (reverse)

seq1  GACAGGGCTTTATATTTTTCTAATTAAAATTAATCTCATTAGTTTCAATC  50
      |||||||| ||||||||| |||||   || |||||||| ||| |||||||
seq2  GACAGGGC-TTATATTTTACTAAT---AAATAATCTCA-TAG-TTCAATC  44

seq1  ATCCTCTGGCTGGTGAGGGATTCTGAGGTCCTGGTCCAGGGCTCCAAGTG  100
         |||||||| |||||||| ||||||||| | |||||||||| ||||||
seq2  CATCTCTGGCT-GTGAGGGAATCTGAGGTCAT-GTCCAGGGCT-CAAGTG  91

seq1  GCTCTCTTCCTGTTTTGTGCCATCTTCAATTTTAATTTGCATAAATCTAG  150
      |||||||  ||||||||||||||||  ||||| |||||||||||||||||
seq2  GCTCTCT--CTGTTTTGTGCCATCTCAAATTTAAATTTGCATAAATCTAG  139

seq1  CCAAGTCATTAATTAAAGAAATTAAATAATCAAAGCTGGGCTCCGGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCATTAATTAAAGAAATTAAATAATCAAAGCTGGGCTCCGGGCTT  189

seq1  TGTGTTTTCCTTTTCGGAACTCCATGTCTGGGAGCAGAGGGTGGAAAGTC  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCC-TTTCGGAACTCCATGTCTGGGAGCAGAGGGTGGAAAGTC  238

seq1  CAACAG-AAAATCTACTTTCCTAAGTAGCATGATCCTGTCGGAGTTTAAT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAAATCTACTTTCCTAAGTAGCATGATCCTGTCGGAGTTTAAT  288

seq1  TAGCCACCACCTACTCCTGACTAGTACAGGACCATTTTATCACTTCCTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCACCTACTCCTGACTAGTACAGGACCATTTTATCACTTCCTAC  338

seq1  TCCCGGTTCCCATCACTTCTCATCCATTGTGGAAGGCTGATTGTTGATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTCCCATCACTTCTCATCCATTGTGGAAGGCTGATTGTTGATTA  388

seq1  AAATTAACTGAGGGAAAACTGCCCCTCAGGTTGCCTCCTCAGCTCTCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTGAGGGAAAACTGCCCCTCAGGTTGCCTCCTCAGCTCTCTGA  438

seq1  GTGATGAAACTGTCATCTCCACAGGCAGGAATTTATCAGGATTTCACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAACTGTCATCTCCACAGGCAGGAATTTATCAGGATTTCACAGA  488

seq1  ACGTGACCGCGAAAACAAGAGCCACGTAGCTGTGTAGCTGTACTGTAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACCGCGAAAACAAGAGCCACGTAGCTGTGTAGCTGTACTGTAGTA  538

seq1  ATGATGAAGATAAGAAAGGAACACAGAAGACACTTGCATCTTCTAGTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAGATAAGAAAGGAACACAGAAGACACTTGCATCTTCTAGTGTC  588

seq1  TGTAGAACCCTGACCACTGGGAGGGAGTCTGTGAGCCTGGGCTCTGGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACCCTGACCACTGGGAGGGAGTCTGTGAGCCTGGGCTCTGGCCT  638

seq1  CAGTTTTGCTGCTGATGTTACAAACTGGTGCCTGAAAACTTGACGCATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGCTGCTGATGTTACAAACTGGTGCCTGAAAACTTGACGCATTT  688

seq1  TAACACACATTGGCGCTAGACTGCTATCTAGTTACCTTGGAGACATCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACATTGGCGCTAGACTGCTATCTAGTTACCTTGGAGACATCCCC  738

seq1  TCTGTTTTTTATCCACTCCTTTCTCAACTCCTTGCAATCTGGTTTGGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTATCCACTCCTTTCTCAACTCCTTGCAATCTGGTTTGGTGT  788

seq1  TGCTCTTCCATCAAAGCTCTTTTCTCTGCCCTTAGTGTAGATCCCAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCATCAAAGCTCTTTTCTCTGCCCTTAGTGTAGATCCCAGAAC  838

seq1  TTGGTTGCTATGTTGTAATTCTAAGAAAGTCTTTTGTATTTGGCATCACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCTATGTTGTAATTCTAAGAAAGTCTTTTGTATTTGGCATCACG  888

seq1  AACTCTGCTCTCTCCCTAGAACCCTGTGCTCCACTCTCTTCATTTCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCTCTCTCCCTAGAACCCTGTGCTCCACTCTCTTCATTTCTGTC  938

seq1  ACCGAACTGTACCTGCTCTTCCTTCTCTTTTTTCCTTTCACCTGTTTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAACTGTACCTGCTCTTCCTTCTCTTTTTTCCTTTCACCTGTTTCTC  988

seq1  ATATGAACCTTCTCTTTCCTTTGCTCTCAGACACCCTGCCCCTCAGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACCTTCTCTTTCCTTTGCTCTCAGACACCCTGCCCCTCAGTTCT  1038

seq1  TGCCTCTCTACTGTTCCTTACACATTAGAGCTCCCTGCACTGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTACTGTTCCTTACACATTAGAGCTCCCTGCACTGAATTC  1085

seq1: chr1_130774314_130775294
seq2: B6Ng01-189N17.g_70_1079

seq1  GAATTCCAGCCTTATGGGAAAACAGAAGCAGTCATTCACTCGCTCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTATGGGAAAACAGAAGCAGTCATTCACTCGCTCACTCA  50

seq1  TTCCTCACCAACAGGATTGTGAGGATAAAGAGACAGTTAGGTACCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACCAACAGGATTGTGAGGATAAAGAGACAGTTAGGTACCATTCT  100

seq1  GCACAGCAGGGTGGGAAAGAGTTGGGAGGGGCTGTTCTTAGTTCCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGGGTGGGAAAGAGTTGGGAGGGGCTGTTCTTAGTTCCAGAGG  150

seq1  AAAGGTACCATTTGCAAGTGGTGCTCTGCAGGCTGGGAAACAAGGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCATTTGCAAGTGGTGCTCTGCAGGCTGGGAAACAAGGCCAAA  200

seq1  GTGGGAGCTAGAGGACACTGATACCCAGCAGGGACTTGAGAGTCTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCTAGAGGACACTGATACCCAGCAGGGACTTGAGAGTCTGGACA  250

seq1  GTCTAGCGGTGTGGTTTGCAGTAAGCAGAGTTTACTATCAGAGACAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCGGTGTGGTTTGCAGTAAGCAGAGTTTACTATCAGAGACAATCA  300

seq1  TCTATCTGCTGGTTCTGTGACCCAGTGGGTAGGGTGCTTGCCATGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGCTGGTTCTGTGACCCAGTGGGTAGGGTGCTTGCCATGAATGC  350

seq1  ACAGAGCCTTGTATTTGACCCACCCAGCACTGAGTTAACTCAGCATGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTTGTATTTGACCCACCCAGCACTGAGTTAACTCAGCATGATG  400

seq1  ACACACATCTGTATTCACAGCATTCAAGACATGGAGGATCAAAAGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTGTATTCACAGCATTCAAGACATGGAGGATCAAAAGTTCAT  450

seq1  GGTCATCGATAGATTATACAGTGAATTGAGACCAGCTTGGACTATAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCGATAGATTATACAGTGAATTGAGACCAGCTTGGACTATAAGAG  500

seq1  GCTATGCCTTAAAACGAAATCGAAACAAACTAAAACAAGTATCCAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCTTAAAACGAAATCGAAACAAACTAAAACAAGTATCCAGCAAC  550

seq1  ACAAAACACAACAAGCTATAGAAGGCCTTCCTTTGGAATTCCATGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACAACAAGCTATAGAAGGCCTTCCTTTGGAATTCCATGGACCC  600

seq1  AGTACTTCTTGGGGAATACAGGCTTGGCTGTGCTGAGCTGAGCTGAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCTTGGGGAATACAGGCTTGGCTGTGCTGAGCTGAGCTGAGTTG  650

seq1  ATGTTCATGGGTGAAATGCAGGTCTGAAGTTATAAAATAGACAC-TTTCT  699
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  ATGTTCATGGGTGAAATGCA-GTCTGAAGTTATAAAATAGACACTTTTCT  699

seq1  TTAGGGATGG-TGTGGCTCATATCCTCCCCACACTGTCTGCTT-CCAT-C  746
      |||||||||| |||||||||||||||||||||||||||||||| |||| |
seq2  TTAGGGATGGTTGTGGCTCATATCCTCCCCACACTGTCTGCTTCCCATCC  749

seq1  CACCCA-CCTGCCTGGCTTACAAG-CCCTGCT--CCTGT-AGGCA-GGAG  790
      |||||| ||||||||||||||||| |||||||  | ||| ||||| ||||
seq2  CACCCACCCTGCCTGGCTTACAAGCCCCTGCTTCCTTGTAAGGCAGGGAG  799

seq1  A-TTGGCAGCC-AAAACTGTAGTGTCTAGAACATT--GGCTTACTGTGTG  836
      | ||||||||| |||||||||||||||||||||||  | |||||| ||||
seq2  ATTTGGCAGCCAAAAACTGTAGTGTCTAGAACATTTGGCCTTACT-TGTG  848

seq1  G----CTATG-ATAGCTGTTA-TTGTCCTTTCTTTCTTAAGGGCTGAGAT  880
      |    ||||| |||||||||| ||||| ||||||||||||||||||| ||
seq2  GTGGCCTATGAATAGCTGTTATTTGTCTTTTCTTTCTTAAGGGCTGAAAT  898

seq1  -GGTTC-TAAGGCTGTTTAG-AAGAATAAAGGAAAATCC-AGGGTCCAGT  926
       ||||| ||||||||||||| |||||||||||||||||| ||| ||||||
seq2  GGGTTCTTAAGGCTGTTTAGAAAGAATAAAGGAAAATCCAAGGTTCCAGT  948

seq1  TTA-CTGGCTAGA-TGTC-ATTTGGGGGC--ACCTTAAAACATTTTTAA-  970
      ||| ||||||| | |||| ||| ||||||   ||| ||||||||||||| 
seq2  TTACCTGGCTATATTGTCTATTGGGGGGCCACCCTAAAAACATTTTTAAT  998

seq1  CAATTTC-ATGC  981
       |||||| ||||
seq2  AAATTTCTATGC  1010