BAC Information

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BAC

Clone NameB6Ng01-190B24
Chromosome1 (Build37)
Map Location 118,772,491 - 118,906,033
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190B24.bB6Ng01-190B24.g
ACCGA013961GA013962
length1,0021,118
definitionB6Ng01-190B24.b B6Ng01-190B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,905,516 - 118,906,033)(118,772,491 - 118,773,229)
sequence
gaattcctataatagaacctattgtcaacttgactgggctgtggaatatg
caggtagtatataaagtatcatttcccagtaggccaatgtgggtgtaatg
ggaatctattatagtctaggaaaatatctgttcttgttgtatggaagaca
tcatttccttaaagcaaaatagaacagaaccaacaatagcatcaaatgga
ggaaaagaaattcaacaacctaagacacacactttctgccgtcaggtgtt
tctgggactgtggaattcatagtactacctaccatatttgttgtcagact
atgggacttaaactgaattactcaaacaccattctccattctgtagtttt
cagacagaatgttatgacaacacttagccttgattgttgtgggacaatgg
actgtgacaggaaacttggtattgtagaacaggtatgagactctgatacc
caggtacccacctgagacagtaggcacctccctgatctctattagatttc
tggcccagaacatgtgtccacactccctgtattggtcatgtaccccagaa
caaagttctcaatgctaatcagttatctagagaccctgaaattttagcca
acaagcttctgtttttggatatccctccctgccaaaggtatctattttct
ggtccaacccgatgagttagtatatatccattttccacgatgaacaatct
gtaaacagtttggaaccaaggactgtctctgccatcaaaacttctttcga
ctactgaacagattcactagtatctcacagaaggcctctttactctcaca
aagagtcaccactgaggtaaggattttctctgatgtgctcagcagaagtt
cccactcctctggccacaggcttgtaagcattagcccttgggctaccaat
tccactcccaaactccctgtgatcgagtgaggcctgaatgtccaggaggt
tgggagccactgaccctgggattctcatcgaaaggcttagggacccctga
ac

gaattcagtaagaatgttgcctattcagtgacattcagaattgcctttgg
tattgtaaaatagatagtgaaagaaatcaggcattactatctactacata
gagttagaaatctcagggcaagcttagcaaagtgagtttagaattcttat
tatagttatatatggcagtctacattacttcttagtagaacccccccccc
atacacacacacacactatcacttaaaataaaagccaagttgctcccata
tacaggaatttacaatggtttaggaagtagatcgggctattgttttagag
tattgcattattcatgagaaggttagctagtgaggaacttcctaattaga
accatgacttggcttctaagaatatagctgaccttagatagagctgactt
tgtctcagttgttttattgcccagttcctgccagtctttgtgattgcatt
tcccctgttttgtttaagagtcattaagcatctggtaaccttcttgtacc
ttgcctatgtgtcacctaactttcctattttcttctgtataaaaagtttg
atgctcgatttgacaaatgacattcagatcaacactcccttgtgttgcgt
ctgtttgtcacctcattctggccaactctatgcccatctacctgagaccc
tgattcccatggattgaggggggccgactgggaccggtccatggcacatg
ttcaggttcaggaacagagcatgaacaagaagttgggccaggctatgaac
catcaaggtgaaaccccagtgttatgcatcctgaagagatattgtatatc
ctgtaacttccaaacctttccacacattaccatcagcttgggaacaagtg
aacgcacagatggagaccatttcatattcaaaacacaataggatccaaga
aggtcaactactgtcagtatctcatcattgattcttgaaataagttctaa
agttttctagatttgggtaaagggtgaaataaagattagacatgtataac
ttccatgtcaagagcagaaagagtaaattcaaagctgggtcatttcatac
acatacttagaattattcaagaaaatataggttaaagaaagcatgctatc
atattttatattctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118905516_118906033
seq2: B6Ng01-190B24.b_43_560 (reverse)

seq1  GACACATGTTCTGGGCCAGAAATCTAATAGAGATCAGGGAGGTGCCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTTCTGGGCCAGAAATCTAATAGAGATCAGGGAGGTGCCTACT  50

seq1  GTCTCAGGTGGGTACCTGGGTATCAGAGTCTCATACCTGTTCTACAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTGGGTACCTGGGTATCAGAGTCTCATACCTGTTCTACAATAC  100

seq1  CAAGTTTCCTGTCACAGTCCATTGTCCCACAACAATCAAGGCTAAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCCTGTCACAGTCCATTGTCCCACAACAATCAAGGCTAAGTGTT  150

seq1  GTCATAACATTCTGTCTGAAAACTACAGAATGGAGAATGGTGTTTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACATTCTGTCTGAAAACTACAGAATGGAGAATGGTGTTTGAGTA  200

seq1  ATTCAGTTTAAGTCCCATAGTCTGACAACAAATATGGTAGGTAGTACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTAAGTCCCATAGTCTGACAACAAATATGGTAGGTAGTACTAT  250

seq1  GAATTCCACAGTCCCAGAAACACCTGACGGCAGAAAGTGTGTGTCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTCCCAGAAACACCTGACGGCAGAAAGTGTGTGTCTTAGG  300

seq1  TTGTTGAATTTCTTTTCCTCCATTTGATGCTATTGTTGGTTCTGTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATTTCTTTTCCTCCATTTGATGCTATTGTTGGTTCTGTTCTAT  350

seq1  TTTGCTTTAAGGAAATGATGTCTTCCATACAACAAGAACAGATATTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAAGGAAATGATGTCTTCCATACAACAAGAACAGATATTTTCC  400

seq1  TAGACTATAATAGATTCCCATTACACCCACATTGGCCTACTGGGAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTATAATAGATTCCCATTACACCCACATTGGCCTACTGGGAAATGA  450

seq1  TACTTTATATACTACCTGCATATTCCACAGCCCAGTCAAGTTGACAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATATACTACCTGCATATTCCACAGCCCAGTCAAGTTGACAATAG  500

seq1  GTTCTATTATAGGAATTC  518
      ||||||||||||||||||
seq2  GTTCTATTATAGGAATTC  518


seq1: chr1_118772491_118773229
seq2: B6Ng01-190B24.g_454_1179

seq1  GCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAGTCTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAGTCTTTGTG  50

seq1  ATTGCATTTCCCCTGTTTTGTTTAAGAGTCATTAAGCATCTGGTAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTTCCCCTGTTTTGTTTAAGAGTCATTAAGCATCTGGTAACCTT  100

seq1  CTTGTACCTTGCCTATGTGTCACCTAACTTTCCTATTTTCTTCTGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCTTGCCTATGTGTCACCTAACTTTCCTATTTTCTTCTGTATAA  150

seq1  AAAGTTTGATGCTCGATTTGACAAATGACATTCAGATCAACACTCCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGATGCTCGATTTGACAAATGACATTCAGATCAACACTCCCTTG  200

seq1  TGTTGCGTCTGTTTGTCACCTCATTCTGGCCAACTCTATGCCCATCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCGTCTGTTTGTCACCTCATTCTGGCCAACTCTATGCCCATCTACC  250

seq1  TGAGACCCTGATTCCCATGGATTGAGGGGGGCCGACTGGGACCGGTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCTGATTCCCATGGATTGAGGGGGGCCGACTGGGACCGGTCCAT  300

seq1  GGCACATGTTCAGGTTCAGGAACAGAGCATGAACAAGAAGTTGGGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGTTCAGGTTCAGGAACAGAGCATGAACAAGAAGTTGGGCCAGG  350

seq1  CTATGAACCATCAAGGTGAAACCCCAGTGTTATGCATCCTGAAGAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACCATCAAGGTGAAACCCCAGTGTTATGCATCCTGAAGAGATAT  400

seq1  TGTATATCCTGTAACTTCCAAACCTTTCCACACATTACCATCAGCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCCTGTAACTTCCAAACCTTTCCACACATTACCATCAGCTTGGG  450

seq1  AACAAGTGAACGCACAGATGGAGACCATTTCATATTCAAAACACAATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGAACGCACAGATGGAGACCATTTCATATTCAAAACACAATAGG  500

seq1  ATCCAAGAAGGTCAACTACTGTCAGTATCTCATCATTGATTCTTGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAAGGTCAACTACTGTCAGTATCTCATCATTGATTCTTGAAATA  550

seq1  AGTTCTAAAGTTTTCTAGATTT-GGTAAAGGGTGAAATAAAGATTAGAAC  599
      |||||||||||||||||||||| |||||||||||||||||||||||||  
seq2  AGTTCTAAAGTTTTCTAGATTTGGGTAAAGGGTGAAATAAAGATTAGA--  598

seq1  AATGTATAACTTCCAATGTCAAAGAGCAGAAAAGAGTAAATTCAAAGCTG  649
       ||||||||||||| ||||| |||||||| ||||||||||||||||||||
seq2  CATGTATAACTTCC-ATGTC-AAGAGCAG-AAAGAGTAAATTCAAAGCTG  645

seq1  GGCCATTTTCATTACACATACTTTAGGAATTATTCCAGGAAAATATAGGG  699
      || || ||||| |||||||||||   |||||||| || ||||||||||| 
seq2  GGTCA-TTTCA-TACACATACTT--AGAATTATT-CAAGAAAATATAGG-  689

seq1  TTTAAAG-AAGCATGGCTTTATTCATA-TTTATATTCTACAG  739
       |||||| |||||| |||    ||||| ||||||||||||||
seq2  -TTAAAGAAAGCAT-GCT---ATCATATTTTATATTCTACAG  726


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