BAC Information

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BAC

Clone NameB6Ng01-191I08
Chromosome1 (Build37)
Map Location 41,447,339 - 41,508,201
singlet/doubletdoublet
Overlap genenone
Upstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191I08.bB6Ng01-191I08.g
ACCGA014991GA014992
length1,1941,133
definitionB6Ng01-191I08.b B6Ng01-191I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,507,001 - 41,508,201)(41,447,339 - 41,448,466)
sequence
gaattcaagatttcaataagagtaaaagttttatttattttttataacaa
catttctgagacgcacaaattttatataggggaatagattttaatacaaa
gatctactatggagcccatattggaaataagaaggtaataaattataaga
gatgaaatatttggccaataagctctgactctagcttcataaaatgtagt
atgtagttttgatcacctgttatgttatgcaaatagcagctgccaaaaag
gtcagaggaatgtttacagtctccaccgtggagctaaattttatagaaaa
gcacatcacattggctcaaaaaaaaaaaaaaatgaccacttgtgatttta
gctaagttttgaaatgttatatttttacatgcctcaatcattaatttgcc
ccctttgttccccaaagtccagcatatgaaaaaataaagataaagtagtc
agagtaatgcaaagttacaaaaggaacaagaaggcctctaattctagtgc
cacttgtatctgctccagacactgaggcaggagaattgcttgagtctagc
agcttaaggtcagcctggttaatataaaacagatacaattagtaaaactt
aatggaaaagcccaatggaggaatactgtataaaccttaagaagaaaaag
tcctaacataattttgaaatagctctatgaaaaaaatcatatgatcggga
tccaatttatataccatgtatgttttcttaatttgtattgtaatgcatgt
aagtgtatgttaggatgttgttttacagtctgtttttttttttgtttgtt
tgttttgttttgtttttgtcaataccccataacattttgcatcacattcc
cattttaatgtcttttgactgtagattgtactatacatgtgggtctctct
ttccttgagtatcattggccattgacccatgagggatgaaggagctgaag
cagctagcaggttaggacagccatggatatgacaaagaacaactggagag
atagctgcagttaagaaagccctacccttattgtatcagagtagggcata
ataaaaagcttttgggtggacagcagagctgatgttcataagactaccta
ttatgctattggagagactgaattgctactagtgctggagtccatgcagc
attgcagagctctgtgccaggtattcttcagaataggcaaggcc

gaattcagtcattcacaaacactgtcaaaggtacaagagttcaagagaat
cccgagggtcaaaaggaggactagttctaaatctgtgctcattgaacctg
gaaatgacatcctctgcctttagatataatcttattcttaccatagcaaa
tcaaatcgtgctgactggcaccaacgtccaggcgattcagcaccatgaaa
ggttactgggagcaaaggggtcatatcctttgtggcaccactctgagaaa
gagacacagacatgtgtgggaatattctacaaagaatggattcctcccac
agtgaaaagcaagccctgccagccctctataaaggaagagggcattccac
gctaggcttattttcatgtttccagccaaagttacaagtactgagtttcc
gagttctaaaacatttgaaggaagtcacagatattgcgtgagatttctaa
tttgcagataagaagtgacaaggagtaagacaacatgaattttctgaaaa
gtatttttttttgccctttggaaagatgcttctattaaattatgcataat
tttcacgaggtgtgaaatttgctagcaaatcgggcaaatttaagaacatt
tgtgtaaatgtttgtcagcattgtccaatgcgggattagaggttaattat
aacaatccagctttgctatggtcaggtttcttcctcgcactggagcttct
gctcctgcctgagaatgtgagaattaggaacaccaacaacgcaccgggcc
gaatgggcaggacatgagaagtttatgaacatagagtcaggtcaaaattg
ggatgcaaaacaaagattctcgctaagaggtcagtccacatgtggcagga
tagagaagaaggcatgcacaaatgagggttttatctttttcatgtgtctg
tttgctatgtaatccaaaattttatctttctgcttcttcctcttcctctt
cctcctcttctctctctctttcactgtctgtctgtctgtctctcctttga
ttgtctctttctgtctctctgtctgtctcctgtgtggtgactgtatttct
ctctgtttacttctctgtctctgtctctctctctgactctggtctctgtc
cctccctccctcccttaccctcccctccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41507001_41508201
seq2: B6Ng01-191I08.b_42_1235 (reverse)

seq1  GGCCTT-----ATCTGAAGAATAACCCTGCACAGAGCTTCCTGCAAATGC  45
      ||||||      |||||||||| |||  ||||||||||  |||| |||||
seq2  GGCCTTGCCTATTCTGAAGAAT-ACCTGGCACAGAGCT--CTGC-AATGC  46

seq1  TGCAT-GACT-CAGCACTTAAGTA-CCACTCAGTCCTTCCTTCCATAGCA  92
      ||||| |||| |||||||  |||| | | ||||||    || | ||||||
seq2  TGCATGGACTCCAGCACT--AGTAGCAATTCAGTC---TCTCCAATAGCA  91

seq1  TAATTAGGTAATGTCTTATGACCAATCAGCCCTTCCTGCTGTCAACCCCA  142
      ||| ||||||  ||||||||| | ||||||     |||||||| | ||||
seq2  TAA-TAGGTA--GTCTTATGAAC-ATCAGC----TCTGCTGTCCA-CCCA  132

seq1  AAAGCTTTT--ATATGCCCTACCTCTGATACAATAA-GGTAGGGCTTTCT  189
      |||||||||   ||||||||| |||||||||||||| |||||||||||||
seq2  AAAGCTTTTTATTATGCCCTA-CTCTGATACAATAAGGGTAGGGCTTTCT  181

seq1  T-ACTGCAGCTATCTCTCCAGTTGTTCTTTGTCATATCCATGGCTGTCCT  238
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAGCTATCTCTCCAGTTGTTCTTTGTCATATCCATGGCTGTCCT  231

seq1  AACCCTGCTAGCTGCTTCAGCTCCTTCATCCCTCATGGGTCAATGGCCAA  288
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-CCTGCTAGCTGCTTCAGCTCCTTCATCCCTCATGGGTCAATGGCCAA  280

seq1  TGATACTCAAGGAAAGAGAGACCCACATGTATAGTACAATCTACAGTCAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTCAAGGAAAGAGAGACCCACATGTATAGTACAATCTACAGTCAA  330

seq1  AAGACATTAAAATGGGAATGTGATGCAAAATGTTATGGGGTATTGACAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTAAAATGGGAATGTGATGCAAAATGTTATGGGGTATTGACAAA  380

seq1  AACAAAACAAAACAAACAAAC-AAAAAAAAAACAGACTGTAAAACAACAT  437
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAACAAACAAAAAAAAAAACAGACTGTAAAACAACAT  430

seq1  CCTAACATACACTTACATGCATTACAATACAAATTAAGAAAACATACATG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACATACACTTACATGCATTACAATACAAATTAAGAAAACATACATG  480

seq1  GTATATAAATTGGATCCCGATCATATGATTTTTTTCATAGAGCTATTTCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAATTGGATCCCGATCATATGATTTTTTTCATAGAGCTATTTCA  530

seq1  AAATTATGTTAGGACTTTTTCTTCTTAAGGTTTATACAGTATTCCTCCAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTTAGGACTTTTTCTTCTTAAGGTTTATACAGTATTCCTCCAT  580

seq1  TGGGCTTTTCCATTAAGTTTTACTAATTGTATCTGTTTTATATTAACCAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTCCATTAAGTTTTACTAATTGTATCTGTTTTATATTAACCAG  630

seq1  GCTGACCTTAAGCTGCTAGACTCAAGCAATTCTCCTGCCTCAGTGTCTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTAAGCTGCTAGACTCAAGCAATTCTCCTGCCTCAGTGTCTGG  680

seq1  AGCAGATACAAGTGGCACTAGAATTAGAGGCCTTCTTGTTCCTTTTGTAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATACAAGTGGCACTAGAATTAGAGGCCTTCTTGTTCCTTTTGTAA  730

seq1  CTTTGCATTACTCTGACTACTTTATCTTTATTTTTTCATATGCTGGACTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATTACTCTGACTACTTTATCTTTATTTTTTCATATGCTGGACTT  780

seq1  TGGGGAACAAAGGGGGCAAATTAATGATTGAGGCATGTAAAAATATAACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACAAAGGGGGCAAATTAATGATTGAGGCATGTAAAAATATAACA  830

seq1  TTTCAAAACTTAGCTAAAATCACAAGTGGTCATTTTTTTTTTTTTTTGAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACTTAGCTAAAATCACAAGTGGTCATTTTTTTTTTTTTTTGAG  880

seq1  CCAATGTGATGTGCTTTTCTATAAAATTTAGCTCCACGGTGGAGACTGTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGATGTGCTTTTCTATAAAATTTAGCTCCACGGTGGAGACTGTA  930

seq1  AACATTCCTCTGACCTTTTTGGCAGCTGCTATTTGCATAACATAACAGGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTCTGACCTTTTTGGCAGCTGCTATTTGCATAACATAACAGGT  980

seq1  GATCAAAACTACATACTACATTTTATGAAGCTAGAGTCAGAGCTTATTGG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACTACATACTACATTTTATGAAGCTAGAGTCAGAGCTTATTGG  1030

seq1  CCAAATATTTCATCTCTTATAATTTATTACCTTCTTATTTCCAATATGGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATTTCATCTCTTATAATTTATTACCTTCTTATTTCCAATATGGG  1080

seq1  CTCCATAGTAGATCTTTGTATTAAAATCTATTCCCCTATATAAAATTTGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTAGATCTTTGTATTAAAATCTATTCCCCTATATAAAATTTGT  1130

seq1  GCGTCTCAGAAATGTTGTTATAAAAAATAAATAAAACTTTTACTCTTATT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCAGAAATGTTGTTATAAAAAATAAATAAAACTTTTACTCTTATT  1180

seq1  GAAATCTTGAATTC  1201
      ||||||||||||||
seq2  GAAATCTTGAATTC  1194


seq1: chr1_41447339_41448466
seq2: B6Ng01-191I08.g_63_1195

seq1  GAATTCAGTCATTCACAAACACTGTCAAAGGTACAAGAGTTCAAGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATTCACAAACACTGTCAAAGGTACAAGAGTTCAAGAGAAT  50

seq1  CCCGAGGGTCAAAAGGAGGACTAGTTCTAAATCTGTGCTCATTGAACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGTCAAAAGGAGGACTAGTTCTAAATCTGTGCTCATTGAACCTG  100

seq1  GAAATGACATCCTCTGCCTTTAGATATAATCTTATTCTTACCATAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACATCCTCTGCCTTTAGATATAATCTTATTCTTACCATAGCAAA  150

seq1  TCAAATCGTGCTGACTGGCACCAACGTCCAGGCGATTCAGCACCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCGTGCTGACTGGCACCAACGTCCAGGCGATTCAGCACCATGAAA  200

seq1  GGTTACTGGGAGCAAAGGGGTCATATCCTTTGTGGCACCACTCTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTGGGAGCAAAGGGGTCATATCCTTTGTGGCACCACTCTGAGAAA  250

seq1  GAGACACAGACATGTGTGGGAATATTCTACAAAGAATGGATTCCTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGACATGTGTGGGAATATTCTACAAAGAATGGATTCCTCCCAC  300

seq1  AGTGAAAAGCAAGCCCTGCCAGCCCTCTATAAAGGAAGAGGGCATTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGCAAGCCCTGCCAGCCCTCTATAAAGGAAGAGGGCATTCCAC  350

seq1  GCTAGGCTTATTTTCATGTTTCCAGCCAAAGTTACAAGTACTGAGTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTTATTTTCATGTTTCCAGCCAAAGTTACAAGTACTGAGTTTCC  400

seq1  GAGTTCTAAAACATTTGAAGGAAGTCACAGATATTGCGTGAGATTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAAAACATTTGAAGGAAGTCACAGATATTGCGTGAGATTTCTAA  450

seq1  TTTGCAGATAAGAAGTGACAAGGAGTAAGACAACATGAATTTTCTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGATAAGAAGTGACAAGGAGTAAGACAACATGAATTTTCTGAAAA  500

seq1  GTATTTTTTTTTGCCCTTTGGAAAGATGCTTCTATTAAATTATGCATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTTTGCCCTTTGGAAAGATGCTTCTATTAAATTATGCATAAT  550

seq1  TTTCACGAGGTGTGAAATTTGCTAGCAAATCGGGCAAATTTAAGAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGAGGTGTGAAATTTGCTAGCAAATCGGGCAAATTTAAGAACATT  600

seq1  TGTGTAAATGTTTGTCAGCATTGTCCAATGCGGGATTAGAGGTTAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATGTTTGTCAGCATTGTCCAATGCGGGATTAGAGGTTAATTAT  650

seq1  AACAATCCAGCTTTGCTATGGTCAGGTTTCTTCCTCGCACTGGAGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCAGCTTTGCTATGGTCAGGTTTCTTCCTCGCACTGGAGCTTCT  700

seq1  GCTCCTGCCTGAGAATGTGAGAATTAGGAACACCAACAACGCACCGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCCTGAGAATGTGAGAATTAGGAACACCAACAACGCACCGGGCC  750

seq1  GAATGGGCAGGACATGAGAAGTTTATGAACATAGAGTCAGGTCAAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCAGGACATGAGAAGTTTATGAACATAGAGTCAGGTCAAAATTG  800

seq1  GGATGCAAAACAAAGATTCTCGCTAAGAGGTCAGTCCACATGTGGCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAAAACAAAGATTCTCGCTAAGAGGTCAGTCCACATGTGGCAGGA  850

seq1  TAGAGAAGAAGGCATGCACAAATGAGGGTTTTATCTTTTTCATGTGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAAGGCATGCACAAATGAGGGTTTTATCTTTTTCATGTGTCTG  900

seq1  TTTGCTATGTAATCCAAAATTTTATCTTTCTGCTTCTTCCTCTTCCTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTAATCCAAAATTTTATCTTTCTGCTTCTTCCTCTTCCTCTT  950

seq1  CCTCCTCTTCTCTCTCTCTTTCACTGTCTGTCTGTCTGTCTCTCCTTTGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTCCTCTTCTCTCTCTCTTTCACTGTCTGTCTGTCTGTCTCTCCTTT-G  999

seq1  TTTGTCTCTTTCTGTCTCTCTGTCTGTCT-CTGTGT-GTGACTGTATTTC  1048
       |||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATTGTCTCTTTCTGTCTCTCTGTCTGTCTCCTGTGTGGTGACTGTATTTC  1049

seq1  TCTCTGTTTACCTCTCTGTCTCTGTCTCTCTCTCTGTCTCT-GTCTCTGT  1097
      ||||||||||| |||||||||||||||||||||||| |||| ||||||||
seq2  TCTCTGTTTACTTCTCTGTCTCTGTCTCTCTCTCTGACTCTGGTCTCTGT  1099

seq1  CCCTCCCTCCCTCCCTT--CCT-CCCTCCCTCCC  1128
      |||||||||||||||||  ||| |||||||||||
seq2  CCCTCCCTCCCTCCCTTACCCTCCCCTCCCTCCC  1133


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