BAC Information

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BAC

Clone NameB6Ng01-191J11
Chromosome1 (Build37)
Map Location 162,698,109 - 162,699,055
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191J11.bB6Ng01-191J11.g
ACCGA015043GA015044
length681949
definitionB6Ng01-191J11.b B6Ng01-191J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacaggacaatacttctctcaataacatactggctactaatgga
ctctgggggagggtagtcattgtctacagtaaagaagtcacttgatatgc
actcactgataagtggatattagcctagaatacccaagatacaatttcca
aaacacaagaaaatcaagaaagaagacaaattcgtggatgcttcattcct
ccctagaatagggaataaaatatccatggaaggagttgcagagacaaagt
ttggagctaagacaaaaggatgggccatccagagactgccccaacccagg
ggtccatcccataatcagccaccaaacgcagacactattgcatataccag
caagattttgctgaagggaccctgatatagctgtctcctgtgaggctttg
ccagtgcctggaaaatacagaagtggatgttcacagtcatctataggatg
gaacacagggcccccaatggaggagcaagagaaagtacccaaggagctga
agggatctgcaaccctataggtggaacaatatgaactaactagtaccccc
agagctcgtgtctctagctgcatatgtagcagaagatggcctagtcggcc
atcattgggaagagaggccccttggtctagcaaactttatatgccccagt
acaggggaatgccagggccaagaagtgggag
gaattccatcagagatgttagtcgccatactcaactctttccctttactc
atgaaggaaccttactagacttctgtttattctggtgagctaaatctgac
tatgcctgggcagtgaccactccagacttgtctgtttttccacaaacttc
tatagttatgctctagacatctaatattattctgttcaatactaataaaa
gccaggagagcagaaagcaagctggccatgatgtaccaaatagtaagatc
aggaacagggctagcaccaaggacaaaagaagcaaaaggaacatgggaga
gaatggtaaacgtggataatcaacatttaatgagcagctactacatgatc
tcctcccaaacaagtgtgggtaccaatcttcaaatgtggctatttgaatg
ccaaaattaaaagacaattatctttggttaccaaaaactgaaggaataaa
gtgagtgagtgtgatggttaatattaaccatcaacttgatgagatttaga
ggattatgaaaacaatagttgaaagtacacatttctattttaaaatattt
cataggctgccaataaaatgactaattttacttgagctttaataccccaa
atgtttaatacattgtaggtaattaatgcattaataaatgtacttttcat
taaggttatttgtatgtgtgtattagtgtgtgcaagtgtgttgggtgccc
atggaggccagaacatgggatcagactgtcatgggacagtaaattagtcc
agccactctggaaataaatataatgaatcctcaaaaagcttaaaataaat
ctaccatatgactcatctatactactcctcaacatatgcccaaagggact
caacatcctactccgggatacttgctcagcaatgttcatttactactcta
ttcaaaatagcaacctaaaagtccttcaattagcaatggatatgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162698109_162699055
seq2: B6Ng01-191J11.g_66_1014

seq1  GAATTCCATCAGAGATGTTAGTCGCCATACTCAACTCTTTCCCTTTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGAGATGTTAGTCGCCATACTCAACTCTTTCCCTTTACTC  50

seq1  ATGAAGGAACCTTACTAGACTTCTGTTTATTCTGGTGAGCTAAATCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAACCTTACTAGACTTCTGTTTATTCTGGTGAGCTAAATCTGAC  100

seq1  TATGCCTGGGCAGTGACCACTCCAGACTTGTCTGTTTTTCCACAAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGGGCAGTGACCACTCCAGACTTGTCTGTTTTTCCACAAACTTC  150

seq1  TATAGTTATGCTCTAGACATCTAATATTATTCTGTTCAATACTAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATGCTCTAGACATCTAATATTATTCTGTTCAATACTAATAAAA  200

seq1  GCCAGGAGAGCAGAAAGCAAGCTGGCCATGATGTACCAAATAGTAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGAGCAGAAAGCAAGCTGGCCATGATGTACCAAATAGTAAGATC  250

seq1  AGGAACAGGGCTAGCACCAAGGACAAAAGAAGCAAAAGGAACATGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGGGCTAGCACCAAGGACAAAAGAAGCAAAAGGAACATGGGAGA  300

seq1  GAATGGTAAACGTGGATAATCAACATTTAATGAGCAGCTACTACATGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTAAACGTGGATAATCAACATTTAATGAGCAGCTACTACATGATC  350

seq1  TCCTCCCAAACAAGTGTGGGTACCAATCTTCAAATGTGGCTATTTGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAAACAAGTGTGGGTACCAATCTTCAAATGTGGCTATTTGAATG  400

seq1  CCAAAATTAAAAGACAATTATCTTTGGTTACCAAAAACTGAAGGAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTAAAAGACAATTATCTTTGGTTACCAAAAACTGAAGGAATAAA  450

seq1  GTGAGTGAGTGTGATGGTTAATATTAACCATCAACTTGATGAGATTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGTGTGATGGTTAATATTAACCATCAACTTGATGAGATTTAGA  500

seq1  GGATTATGAAAACAATAGTTGAAAGTACACATTTCTATTTTAAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATGAAAACAATAGTTGAAAGTACACATTTCTATTTTAAAATATTT  550

seq1  CATAGGCTGCCAATAAAATGACTAATTTTACTTGAGCTTTAATACCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGCCAATAAAATGACTAATTTTACTTGAGCTTTAATACCCCAA  600

seq1  ATGTTTAATACATTGTAGGTAATTAATGCATTAATAAATGTACTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATACATTGTAGGTAATTAATGCATTAATAAATGTACTTTTCAT  650

seq1  TAAGGTTATTTGTATGTGTGTATTAGTGTGTGCAAGTGTGTTGGGTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTATTTGTATGTGTGTATTAGTGTGTGCAAGTGTGTTGGGTGCCC  700

seq1  ATGGAGGCCAGAACATGGGATCAGACTGTCATGGGACAGTAAATTAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCCAGAACATGGGATCAGACTGTCATGGGACAGTAAATTAGTCC  750

seq1  AGCCACTCTGGAAATAAATATAATGAATCCTCAAAAAGCTTAAAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCTGGAAATAAATATAATGAATCCTCAAAAAGCTTAAAATAAAT  800

seq1  CTACCATATGACTCATCTATACTACTCCTCAACATATGCCCAAA-GGACT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTACCATATGACTCATCTATACTACTCCTCAACATATGCCCAAAGGGACT  850

seq1  CAACATCCTACTCC-GGATACTTGCTCAGCAATGTTCA-TTACTACTCTA  897
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  CAACATCCTACTCCGGGATACTTGCTCAGCAATGTTCATTTACTACTCTA  900

seq1  TTCAAAATAGCAACCTAAAAGTCCTTCAATTAGCAATGGATAATGAAAAT  947
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCAAAATAGCAACCTAAAAGTCCTTCAATTAGCAATGGAT-ATGAAAAT  949