BAC Information

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BAC

Clone NameB6Ng01-192E11
Chromosome17 (Build37)1 (Build37)
Map Location 50,597,044 - 50,598,234159,867,163 - 159,867,377
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192E11.bB6Ng01-192E11.g
ACCGA015557GA015558
length1,1941,054
definitionB6Ng01-192E11.b B6Ng01-192E11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,597,044 - 50,598,234)(159,867,163 - 159,867,377)
sequence
gaattcaatttaaagacatcactaacaaaataccagatagtgttatagtt
agcctttctagccatatgtaggaagtagttctatttctaatgggctttaa
tatgagaaatcccacaggcaagaggaaaatgtgtttgcattgactcttcc
acagccatctccagtcatacagaaaattctcttcctctagggctttgatg
ttctgtgagagatttaccaaaatgttaaggatgctttctctacacggtgg
catcatgggtaacgaatgcttctttgtattttctcagctttctgcatcta
gcataaagaccagttgcatttataaaaaaacaaaacaaaacaaaacaaaa
caataacaaaaaacactttctgaaaaatctttttaaaattaaaaaaaaag
tatttgttgttctaattcttttttataggtgtacagtttcctctttatgt
tttatagtctcttcagacctgacagctcagtcaggaaaaggaaaagacaa
agaccagtggtcccagagaaataagaggcgggactccctttccactgggg
cccaggagtcaggtgaatcttgtggcagcatctctgatcacatacattac
aactgaaaaaatattccagcaaaagttggcaatactgaaggccttactca
acctagtgctggtgtggcagggcaggggagactaaaccaaccaggtgctg
ctctgataagagacgagaagctatccagtcaatcctctgggtgtagatcc
tgaggacttaaagaagcctgcgcagtctgagtgctaagtctctggggctg
cttccccggcagcactgagagccagcacaggcagccaggggaaggtggtg
aggagcctactgaggagactgaggccaggcacaagactggtcctctacag
gaagcactcagcttttgtcaaagtggttgtgtaagcagcagaggcctgct
ctcgtttgctgagactctcctacgtcgttctgtcatgaagtgcctaaagc
aggagctcaaaacagcccagtccttactttgaatctgaagcctacaggtt
tcatgttcaggagaagttattttcccacctagctgtgtagcagcaggcaa
gcgtgggtaggcaaattagagcagaatagggcgtgcgtactctgtaaaac
tggcaaacctatctctatatgtttgaagccttggtagttacagg

gaattctctaggcagtcctgctacaaatgaaaactcccaagaaatacaaa
tgtgccaatcaagggctccagcttgccaaccacagacgactggagcagta
ccacacctatcaattactagcttccttagacattatgaatgatgctgtca
ttattttggacaatacattggattgctgcatacaggttaggtatccctca
ccgaaaatgcttagaaccataagtgtttttatttttaaaatattttcata
cactttctagttaagcatccccaatttaagaacccaaaatctgcaacagt
ccacatctggacttggagattagggatgcttagcactgaccacagcctct
ggtgaaaccatttgagaatatgttgaatcccttaacagagacaaacgttg
gactgaaatgataaaaactgctatatggtatgctggctggttttgtatca
atgtcacacaatttagtcgtttttgaaagagggaatctcaattaaaaaag
aactctaccaagttgccctgtgggcaaggctgtggctcattttcttgact
gatgattaatgtgagagggcccagctcattatgggcagtgggtactataa
gaaagaaggctaatcatttccttacgtgcttctcgctattcaatatccct
cagttgagaattctttgtttagctctctactccagtttttaatacagtta
tttggttctctggagtctaacttcttgagttctttgtatatattggatat
tagccttctatgggatgtaggattggtaaagatcttttcccaatctgttg
gttgtcattttgccctattgacagaggtgccatttgtccattcttggtct
tagagcataagctattggtgttctgttcaggaaatttccccctgtaccca
tgtgttcaaggctctttcccactttctctctatagcttcagtgtatctgg
ttttatgttcagcatctaggaaatgcaaatcaaacaccctgagagtacgt
ctcaacagtcagatgctaaaataaaaaactcagatgacagcagatgctgg
tgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50597044_50598234
seq2: B6Ng01-192E11.b_47_1240

seq1  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50

seq1  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100

seq1  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150

seq1  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200

seq1  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250

seq1  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300

seq1  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350

seq1  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400

seq1  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450

seq1  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500

seq1  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550

seq1  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600

seq1  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650

seq1  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700

seq1  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750

seq1  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCTGGGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCTGGGGCTG  800

seq1  CTTCCCCGGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAGGTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCGGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAGGTGGTG  850

seq1  AGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTACAG  900

seq1  GAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTGCT  950

seq1  CTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGGCTAAAAG  1000
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  CTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGCCT-AAAG  999

seq1  CAGGAGGCTCAAAACAGCCCAGTCCTTAC-TTGGATCTGAAGGCTACA-G  1048
      ||||| ||||||||||||||||||||||| ||| |||||||| ||||| |
seq2  CAGGA-GCTCAAAACAGCCCAGTCCTTACTTTGAATCTGAAGCCTACAGG  1048

seq1  TTTCATGTTCA-GAGAAGTTATTTTCCCACCTAGCTGTGTAGCAGCAG--  1095
      ||||||||||| ||||||||||||||||||||||||||||||||||||  
seq2  TTTCATGTTCAGGAGAAGTTATTTTCCCACCTAGCTGTGTAGCAGCAGGC  1098

seq1  CAGCGGTGGGGTAGGGCAAATAGAG-AG-ATAGGGGGTGGGGTACTCTGT  1143
       ||||   |||||||  || ||||| || |||||| || | |||||||||
seq2  AAGCG--TGGGTAGGCAAATTAGAGCAGAATAGGGCGT-GCGTACTCTGT  1145

seq1  -AGACTGGAAAACCTATCT-TA-GTGTTTGAAGAGCTGTGGTAGTTACAG  1190
       | ||||| |||||||||| ||  |||||||  |||  ||||||||||||
seq2  AAAACTGGCAAACCTATCTCTATATGTTTGA--AGCCTTGGTAGTTACAG  1193

seq1  G  1191
      |
seq2  G  1194


seq1: chr1_159867163_159867377
seq2: B6Ng01-192E11.g_772_1120 (reverse)

seq1  CTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACT  50
      |||||||||||||||||||| |||||||||| || |||||   |||||||
seq2  CTCACCAGCATCTGCTGTCATCTGAGTTTTTTATTTTAGC--ATCTGACT  48

seq1  GGTGTGAGGTGGAATCTTGGGGTTGTTTTGATTTGCATTTCC------CT  94
      | || || ||  | |||  ||||   ||||||||||||||||      ||
seq2  GTTGAGACGT--ACTCTCAGGGT--GTTTGATTTGCATTTCCTAGATGCT  94

seq1  GA------------------TGA--CTA-----AGAATG-----------  108
      ||                  |||  |||     |||| |           
seq2  GAACATAAAACCAGATACACTGAAGCTATAGAGAGAAAGTGGGAAAGAGC  144

seq1  -TTGAACATTTCATTA---GGTG---CTTC---------TCATCCATTTG  142
       |||||||  |   ||   || |    |||          || | ||   
seq2  CTTGAACACATGGGTACAGGGGGAAATTTCCTGAACAGAACACCAATAGC  194

seq1  TTATTC-CTCAG--------TTGAGAATT-----CTTTGT----------  168
      |||| | || ||        | || || |     || |||          
seq2  TTATGCTCTAAGACCAAGAATGGACAAATGGCACCTCTGTCAATAGGGCA  244

seq1  -----------------TT------AGCTCTGTAC-----------CCCA  184
                       ||      || ||| |||           ||||
seq2  AAATGACAACCAACAGATTGGGAAAAGATCTTTACCAATCCTACATCCCA  294

seq1  T------------------------TAAGAACTCAATAAGTTAGACTCCA  210
      |                         |||||||||| |||||||||||||
seq2  TAGAAGGCTAATATCCAATATATACAAAGAACTCAAGAAGTTAGACTCCA  344

seq1  GAGAA  215
      |||||
seq2  GAGAA  349


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