BAC Information

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BAC

Clone NameB6Ng01-192F12
Chromosome1 (Build37)
Map Location 134,532,280 - 134,715,868
singlet/doubletdoublet
Overlap geneNfasc
Upstream geneCtse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192F12.bB6Ng01-192F12.g
ACCGA015607GA015608
length1,1091,022
definitionB6Ng01-192F12.b B6Ng01-192F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,714,743 - 134,715,868)(134,532,280 - 134,533,290)
sequence
gaattcatcagtaaatgcagccggcatgcatcattggtctgcaccatgga
gaaaaaggctttttagtgagggagttgtgtgtgtttgtgagcatcctggc
caatccctcagatgctagagtttcttctgcccatagggaagactgggggc
cacagtcacacctggcatctcattccaaatactgacaggcagaaagtggc
agacaactcctctctctctcttcatcagatcctccctgtcactgcccaag
ggttcagatctcctatggtgtcaccagcacgagagcctcctacttctgaa
ccttgttctggaacagccttgcttagtttgtaaataccagcagcaaggca
ccatgaaacagaagaaattgaggcaggatgatccagaaatgcaggatgac
atttgtcaccagatatacagacagaagcatggtcctgagcggcagcaaga
ctaggtggacccccacgaggtgtgccagaagaaggtgagtatatactgtt
taggacagaagtgagctcattctaagctgtaatgtacctagtttgtgcta
atctatcgtcaggcatattcctggcatcagggtctagttgaaaagccaga
aaccactggttgtagtttgcagtgaaacttcaggagaaacaaactagagg
gatacagatgcatcatggtagttacaactcaagatggctgcagtcacctc
aagctgaatccttatagacttttggcagaagcgctgggaattctcctcca
gcccactgtctggctgaagcatccgtgtgagccttaccgctgccccatcc
ccctctctcccaactctctaccagagcagtctgcagccagacatctggtg
ctacggctccaggtccaactccttcagccccagcctatgcggatgtagtc
ttcctagcctcggattcctgtctgttcctatcaatccgttgttctgagaa
gaagtaaggtgtttattagacaagtactagatcatgtgaggggacgagag
cttgtgacgagcactagacgtcagatgcataaggtgcgagtgaggctggt
ggaacaattttgttaaggaaatgaaaactcgattgatctgctgggaagga
aaaaactga
gaattcatgtggaaaagaccaatcttgttcgaagcttatcattcttggtt
tgactgcctctcacgagcccagggccagagcaaacctccccccccccccc
cactgcattgtccgagacacagtctcctactctgagacagtaacatatga
tttaacatcttcactttgctacgatgtatcatttggcagaaagagagctg
gccttggtcgtcaaggagtgggtctaaccaaaccctgttctactcctggt
tcagtcaagctggtgactggcggtgtaggcatttaaaatttccccctctt
ctcagaaagacactggctctgccagagaaaggggagcaaatgaataagac
catgtagcagcacaggccagtctggataggacaggctactccttcctgtc
tactgacttctttgagacaagcaaaaagacaagctcagaatgaaaagctt
gagttagctaggaatagggacttcccataacctgaacatggggtggatgg
tggtcacccagaacagtcagaaaataacatctatctgggtccagcggcac
atacctgaaaccctactccttaggaggggagactgaggcaggagaatggt
gagtttcaggccagccaggggtacacactaagattccagggtttcactgc
aacagaatcaagccattcaacaccttcgaacctggtttccttatgagata
aatttcccaatttgctgaaagtggtaaaaaccccataaatacaagggcaa
ttctgtggttggtttgtttgtttgcttggtttcccctccggaggaggaaa
tagaggctcagaggctttgaagcagcttttctcattgaccacacagtgaa
tagcaggcctcggctcagctgttttgagccacactgggccacttcacacc
cggctaattaaaagcgaagccctcctgtatgggacctggaggggtgtcaa
aggcatattctttggatggatgaaccaaacacttataaagagtggttggt
ggtgtctattttatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134714743_134715868
seq2: B6Ng01-192F12.b_45_1153 (reverse)

seq1  TCAGTTTTTTCTCCTTTCCCAGCAGGAATCAAAATCGAAGTTTTTCATTT  50
      ||||||||||   | ||||||||||  |||  ||||||   |||||||||
seq2  TCAGTTTTTT---CCTTCCCAGCAG--ATC--AATCGA--GTTTTCATTT  41

seq1  TCCTTACAAAATGTTCCCACCAGCCTCCACCTCGCACCTTATGCATTCTT  100
       | | |||||||  | |||||||||||   ||||||||||||||||   |
seq2  CCTTAACAAAATTGTTCCACCAGCCTC--ACTCGCACCTTATGCAT--CT  87

seq1  GACGTTCTGTTGGCTCGTCACCAGCTCTCGTCCCCTCACATGATCTAGTA  150
      |||||   ||  ||||||||| ||||||||||||||||||||||||||||
seq2  GACGTCTAGT--GCTCGTCACAAGCTCTCGTCCCCTCACATGATCTAGTA  135

seq1  CTTGTCTAATAAACACCTTACTTCCTTCTCAGAACAACGGATTGATAGGA  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGTCTAATAAACACCTTACTT-CTTCTCAGAACAACGGATTGATAGGA  184

seq1  ACAGACAGGAATCCGAGGCTAGGAAGACTACATCCGCATAGGCTGGGGCC  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGACAGGAATCCGAGGCTAGGAAGACTACATCCGCATAGGCTGGGG-C  233

seq1  TGAAGGAGTTGGACCTGGAGCCGTAGCACCAGATGTCTGGCTGCAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGTTGGACCTGGAGCCGTAGCACCAGATGTCTGGCTGCAGACTG  283

seq1  CTCTGGTAGAGAGTTGGGAGAGAGGGGGATGGGGCAGCGGTAAGGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAGAGAGTTGGGAGAGAGGGGGATGGGGCAGCGGTAAGGCTCAC  333

seq1  ACGGATGCTTCAGCCAGACAGTGGGCTGGAGGAGAATTCCCAGCGCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGCTTCAGCCAGACAGTGGGCTGGAGGAGAATTCCCAGCGCTTCT  383

seq1  GCCAAAAGTCTATAAGGATTCAGCTTGAGGTGACTGCAGCCATCTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGTCTATAAGGATTCAGCTTGAGGTGACTGCAGCCATCTTGAGT  433

seq1  TGTAACTACCATGATGCATCTGTATCCCTCTAGTTTGTTTCTCCTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTACCATGATGCATCTGTATCCCTCTAGTTTGTTTCTCCTGAAGT  483

seq1  TTCACTGCAAACTACAACCAGTGGTTTCTGGCTTTTCAACTAGACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCAAACTACAACCAGTGGTTTCTGGCTTTTCAACTAGACCCTGA  533

seq1  TGCCAGGAATATGCCTGACGATAGATTAGCACAAACTAGGTACATTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAATATGCCTGACGATAGATTAGCACAAACTAGGTACATTACAG  583

seq1  CTTAGAATGAGCTCACTTCTGTCCTAAACAGTATATACTCACCTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATGAGCTCACTTCTGTCCTAAACAGTATATACTCACCTTCTTCT  633

seq1  GGCACACCTCGTGGGGGTCCACCTAGTCTTGCTGCCGCTCAGGACCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCTCGTGGGGGTCCACCTAGTCTTGCTGCCGCTCAGGACCATGC  683

seq1  TTCTGTCTGTATATCTGGTGACAAATGTCATCCTGCATTTCTGGATCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTATATCTGGTGACAAATGTCATCCTGCATTTCTGGATCATC  733

seq1  CTGCCTCAATTTCTTCTGTTTCATGGTGCCTTGCTGCTGGTATTTACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAATTTCTTCTGTTTCATGGTGCCTTGCTGCTGGTATTTACAAA  783

seq1  CTAAGCAAGGCTGTTCCAGAACAAGGTTCAGAAGTAGGAGGCTCTCGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAGGCTGTTCCAGAACAAGGTTCAGAAGTAGGAGGCTCTCGTGC  833

seq1  TGGTGACACCATAGGAGATCTGAACCCTTGGGCAGTGACAGGGAGGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACACCATAGGAGATCTGAACCCTTGGGCAGTGACAGGGAGGATCT  883

seq1  GATGAAGAGAGAGAGAGGAGTTGTCTGCCACTTTCTGCCTGTCAGTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGAGAGAGAGGAGTTGTCTGCCACTTTCTGCCTGTCAGTATTT  933

seq1  GGAATGAGATGCCAGGTGTGACTGTGGCCCCCAGTCTTCCCTATGGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGATGCCAGGTGTGACTGTGGCCCCCAGTCTTCCCTATGGGCAG  983

seq1  AAGAAACTCTAGCATCTGAGGGATTGGCCAGGATGCTCACAAACACACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCTAGCATCTGAGGGATTGGCCAGGATGCTCACAAACACACAC  1033

seq1  AACTCCCTCACTAAAAAGCCTTTTTCTCCATGGTGCAGACCAATGATGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTCACTAAAAAGCCTTTTTCTCCATGGTGCAGACCAATGATGCA  1083

seq1  TGCCGGCTGCATTTACTGATGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TGCCGGCTGCATTTACTGATGAATTC  1109

seq1: chr1_134532280_134533290
seq2: B6Ng01-192F12.g_65_1086

seq1  GAATTCATGTGGAAAAGACCAATCTTGTTCGAAGCTTATCATTCTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGAAAAGACCAATCTTGTTCGAAGCTTATCATTCTTGGTT  50

seq1  TGACTGCCTCTCACGAGCCCAGGGCCAGAGCAAACCTCCCCCCCCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCCTCTCACGAGCCCAGGGCCAGAGCAAACCTCCCCCCCCCCCCC  100

seq1  CACTGCATTGTCCGAGACACAGTCTCCTACTCTGAGACAGTAACATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATTGTCCGAGACACAGTCTCCTACTCTGAGACAGTAACATATGA  150

seq1  TTTAACATCTTCACTTTGCTACGATGTATCATTTGGCAGAAAGAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATCTTCACTTTGCTACGATGTATCATTTGGCAGAAAGAGAGCTG  200

seq1  GCCTTGGTCGTCAAGGAGTGGGTCTAACCAAACCCTGTTCTACTCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCGTCAAGGAGTGGGTCTAACCAAACCCTGTTCTACTCCTGGT  250

seq1  TCAGTCAAGCTGGTGACTGGCGGTGTAGGCATTTAAAATTTCCCCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAAGCTGGTGACTGGCGGTGTAGGCATTTAAAATTTCCCCCTCTT  300

seq1  CTCAGAAAGACACTGGCTCTGCCAGAGAAAGGGGAGCAAATGAATAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGACACTGGCTCTGCCAGAGAAAGGGGAGCAAATGAATAAGAC  350

seq1  CATGTAGCAGCACAGGCCAGTCTGGATAGGACAGGCTACTCCTTCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCAGCACAGGCCAGTCTGGATAGGACAGGCTACTCCTTCCTGTC  400

seq1  TACTGACTTCTTTGAGACAAGCAAAAAGACAAGCTCAGAATGAAAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTTCTTTGAGACAAGCAAAAAGACAAGCTCAGAATGAAAAGCTT  450

seq1  GAGTTAGCTAGGAATAGGGACTTCCCATAACCTGAACATGGGGTGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGCTAGGAATAGGGACTTCCCATAACCTGAACATGGGGTGGATGG  500

seq1  TGGTCACCCAGAACAGTCAGAAAATAACATCTATCTGGGTCCAGCGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCCAGAACAGTCAGAAAATAACATCTATCTGGGTCCAGCGGCAC  550

seq1  ATACCTGAAACCCTACTCCTTAGGAGGGGAGACTGAGGCAGGAGAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAAACCCTACTCCTTAGGAGGGGAGACTGAGGCAGGAGAATGGT  600

seq1  GAGTTTCAGGCCAGCCAGGGGTACACACTAAGATTCCAGGGTTTCACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAGGCCAGCCAGGGGTACACACTAAGATTCCAGGGTTTCACTGC  650

seq1  AACAGAATCAAGCCATTCAACACCTTCGAACCTGGTTTCCTTATGAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCAAGCCATTCAACACCTTCGAACCTGGTTTCCTTATGAGATA  700

seq1  AATTTCCCAATTTGCTGAAAGTGGTAAAAACCCCATAAATACAAGGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCAATTTGCTGAAAGTGGTAAAAACCCCATAAATACAAGGGCAA  750

seq1  TTCTGTGGTTGGTTTGTTTGTTTGCTT-GTTTCCCCTCCGGAGGAGGAAA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTGTGGTTGGTTTGTTTGTTTGCTTGGTTTCCCCTCCGGAGGAGGAAA  800

seq1  TAGAGGCTCAGA-GCTTTGAAGCAGC-TTTCTCATTGACCACACAGTG-A  846
      |||||||||||| ||||||||||||| ||||||||||||||||||||| |
seq2  TAGAGGCTCAGAGGCTTTGAAGCAGCTTTTCTCATTGACCACACAGTGAA  850

seq1  TAGCA-GCCTCGGCTCAGCTGTTTTGAGCCACACT-GGCCACTTCACACC  894
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCAGGCCTCGGCTCAGCTGTTTTGAGCCACACTGGGCCACTTCACACC  900

seq1  C-GCTAATTAAAAGCG-AGCCCTCCTGTATGGGACCTGGA-GGGTGTC-A  940
      | |||||||||||||| ||||||||||||||||||||||| ||||||| |
seq2  CGGCTAATTAAAAGCGAAGCCCTCCTGTATGGGACCTGGAGGGGTGTCAA  950

seq1  AGGCATATTCTTTGGATGGATGAACCAAACACTTTAATAAAGAGTTGTTG  990
      ||||||||||||||||||||||||||||||||||  ||||||||| ||||
seq2  AGGCATATTCTTTGGATGGATGAACCAAACACTT--ATAAAGAGTGGTTG  998

seq1  --TGTGTCTA-TTTATGTGTGTGT  1011
         ||||||| |||||||||||||
seq2  GTGGTGTCTATTTTATGTGTGTGT  1022