BAC Information

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BAC

Clone NameB6Ng01-192K04
Chromosome1 (Build37)
Map Location 133,046,185 - 133,209,313
singlet/doubletdoublet
Overlap geneLgtn, Rassf5, Ikbke, Srgap2
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
Downstream geneLOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192K04.bB6Ng01-192K04.g
ACCGA015826GA015827
length1,118954
definitionB6Ng01-192K04.b B6Ng01-192K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,046,185 - 133,047,318)(133,208,362 - 133,209,313)
sequence
gaattcattagggagaggagagggaggctgttagcattctgtctaaactc
caccccactgttacctggcaacagccaggtaggcctgacccactataaaa
ggggctgcttgccccctcctccctctcttgcctttgggctcttccctccc
cccaccctttcccctccctccacatggccatggccagcctctacttctct
atccctctctgcctttctctgcttctactaccctctttttgttttgtttt
gttttggtttggtttggtttatttttggtttttcgagacagggtttctct
gcagccctggcttccctagaactcactttgtagaccaggctggcctcaaa
ctcagaaatccacctgcctctacctcccaagtgctaggattaaaggcgtg
cgccaccaagcccagctttctactaccctcttaattcccttccccatgcc
ctgaataaactctattctatactataaggtcgtgtgtgtctggtctctca
ggaagccaacgggatgcctaggcatgggcccgctgagacacacctttccc
cccacacctcaccacacccacattatacctctttttctttctataaacac
attggaggcttaaaaaaaaaggaatctctcttctaacctgtggttgcttc
aaaatatcccttgttcttgtaagtaatctatgttacagctctgttcctgt
ctagtgtaatttgtggagattaacccccttccagcaaatttcactcttag
tagttgtaatgctgtaattccagctatgttgggaaggctgagacaggaga
atcacaagtttaatgcatgcctgggccacagaatgagttcaaggtcaacc
tggacaaaaatacatatgtacatatgtattagtcagggtttctctagagt
cacagaacttatggatagtctctagatagtaaaggaatttattgatgact
tacagtcacagtcaaattcccaacaatgattcagtcgccagctgtgaatg
gaagtccagatctagcagttactcagctccacggagcagcagtgaggaca
gagctagactccttcttcatgtctattatgtctcagcagaagtgtagccc
aataaagggtgttccacc
gaattcactcaggtttcttagaaatagtgtttctctctgcctatcacaca
ttccaataactctggtttcttattgttactaaaacaccctcaaatcacat
taaagaaacaaggcttttctaagctttctgtcttggagaaggtccagaga
aggattttaaaattaaatgtctaataatgaatgtctaaatgtctatgagc
tggatgcagtggtgtaggactgtgaacagcatttgaaggccaaggcagga
agacaatgagtctggggaacgtaacaaatctctgtcttaagcaaagacaa
accaactcctatgtagccaggcagcagccactgagatgatacccttgcct
gctggcctctctgtctttagttttggtattgtggagaatacctctcagcc
actgctgtccatggcaattgttcatacctcatgccatctctaatgtccta
cagtgattatagaaggatcacaggtgcacatcatattcttcagcaaagaa
gaacgccatttgttagaggaaaaccagctttgtagcataagtctggatgt
aggacacactagaaataaacttcacccaatccagaagaatggcagtggaa
tccaaaggctctagttccttttcagggtctgtcagaattggacactgaga
acctactgctgataaccataggaaggccaaactcctcagcaatgcccatc
aagctttgtagaggatgctcccaaagacagcccaggcttctgtgtcagac
aggcacttaattagggcttactacagttttagaggattagttcattgtca
tcatggtggcagaaaaaaatggtagcacacaggcatacagacctgataca
aggtagctgacagttctacatctggatcttgcaagcagcagcagaaagaa
gaaagccaggccctggctttgggctttttgaagcctcaagcccaccccca
ctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133046185_133047318
seq2: B6Ng01-192K04.b_43_1160

seq1  GAATTCATTAGGGAGAGGAGAGGGAGGCTGTTAGCATTCTGTCTAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGGAGAGGAGAGGGAGGCTGTTAGCATTCTGTCTAAACTC  50

seq1  CACCCCACTGTTACCTGGCAACAGCCAGGTAGGCCTGACCCACTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTGTTACCTGGCAACAGCCAGGTAGGCCTGACCCACTATAAAA  100

seq1  GGGGCTGCTTGCCCCCTCCTCCCTCTCTTGCCTTTGGGCTCTTCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTTGCCCCCTCCTCCCTCTCTTGCCTTTGGGCTCTTCCCTCCC  150

seq1  CCCACCCTTTCCCCTCCCTCCACATGGCCATGGCCAGCCTCTACTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTTCCCCTCCCTCCACATGGCCATGGCCAGCCTCTACTTCTCT  200

seq1  ATCCCTCTCTGCCTTTCTCTGCTTCTACTACCCTCTTTTTGTTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCTGCCTTTCTCTGCTTCTACTACCCTCTTTTTGTTTTGTTTT  250

seq1  GTTTTGGTTTGGTTTGGTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTGGTTTGGTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCT  300

seq1  GCAGCCCTGGCTTCCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGGCTTCCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCAAA  350

seq1  CTCAGAAATCCACCTGCCTCTACCTCCCAAGTGCTAGGATTAAAGGCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCACCTGCCTCTACCTCCCAAGTGCTAGGATTAAAGGCGTG  400

seq1  CGCCACCAAGCCCAGCTTTCTACTACCCTCTTAATTCCCTTCCCCATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCAAGCCCAGCTTTCTACTACCCTCTTAATTCCCTTCCCCATGCC  450

seq1  CTGAATAAACTCTATTCTATACTATAAGGTCGTGTGTGTCTGGTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAACTCTATTCTATACTATAAGGTCGTGTGTGTCTGGTCTCTCA  500

seq1  GGAAGCCAACGGGATGCCTAGGCATGGGCCCGCTGAGACACACCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAACGGGATGCCTAGGCATGGGCCCGCTGAGACACACCTTTCCC  550

seq1  CCCACACCTCACCACACCCACATTATACCTCTTTTTCTTTCTATAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTCACCACACCCACATTATACCTCTTTTTCTTTCTATAAACAC  600

seq1  ATTGGAGGCTTAAAAAAAAAGGAATCTCTCTTCTAACCTGTGGTTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGCTTAAAAAAAAAGGAATCTCTCTTCTAACCTGTGGTTGCTTC  650

seq1  AAAATATCCCTTGTTCTTGTAAGTAATCTATGTTACAGCTCTGTTCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCTTGTTCTTGTAAGTAATCTATGTTACAGCTCTGTTCCTGT  700

seq1  CTAGTGTAATTTGTGGAGATTAACCCCCTTCCAGCAAATTTCACTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAATTTGTGGAGATTAACCCCCTTCCAGCAAATTTCACTCTTAG  750

seq1  TAGTTGTAATGCTGTAATTCCAGCTATGTTGGG-AGGCTGAGACAGGAGA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGTTGTAATGCTGTAATTCCAGCTATGTTGGGAAGGCTGAGACAGGAGA  800

seq1  ATCACAAGTTTAATGCATGCCTGGGCCACAGAATGAGTTCAAGGTCAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTTTAATGCATGCCTGGGCCACAGAATGAGTTCAAGGTCAACC  850

seq1  TGGACAAAAAATACATATGTACATATGTATTAGTCAGGG-TTCTCTAGAG  898
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGAC-AAAAATACATATGTACATATGTATTAGTCAGGGTTTCTCTAGAG  899

seq1  TCACAGAACTTATGGATAGTCTCTAGATAGTAAAGGAATTTATTGATGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACTTATGGATAGTCTCTAGATAGTAAAGGAATTTATTGATGAC  949

seq1  TTACAGTCAACAGTCCAATTCCCAACAATGATTCAGTCG-CAGCTGTGAA  997
      |||||||| |||||| ||||||||||||||||||||||| ||||||||||
seq2  TTACAGTC-ACAGTCAAATTCCCAACAATGATTCAGTCGCCAGCTGTGAA  998

seq1  TGGAAGTCCAAGGATCTAGCAGTTACTCAGGCTCACGGAGCAAGCAGGCG  1047
      ||||||||||  ||||||||||||||||||   |||||||| |||||   
seq2  TGGAAGTCCA--GATCTAGCAGTTACTCAGCTCCACGGAGC-AGCAG--T  1043

seq1  AAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCA  1097
       ||||   ||||||||||| ||||||||  |||||  |||  ||||| ||
seq2  GAGGA--CAGAGCTAGACT-CCTTCTTC--ATGTC--TATTATGTCT-CA  1085

seq1  GCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCACC  1134
      |||||| |||||||||  | |||||| ||||||||||
seq2  GCAGAA-GTGTAGCCC--AATAAAGG-GTGTTCCACC  1118

seq1: chr1_133208362_133209313
seq2: B6Ng01-192K04.g_65_1018 (reverse)

seq1  TCAGTGGGGGTGGGCTTTGAGGCTTC-AAAAGCCC-AAGCCAGGGCCTGG  48
      ||||||||||||||| |||||||||| |||||||| ||||||||||||||
seq2  TCAGTGGGGGTGGGC-TTGAGGCTTCAAAAAGCCCAAAGCCAGGGCCTGG  49

seq1  CTTTC-TCTTTCTGCTGCTGCCTGC-AGATCCAGATGTAGAACTGTCAGC  96
      ||||| ||||||||||||||| ||| ||||||||||||||||||||||||
seq2  CTTTCTTCTTTCTGCTGCTGCTTGCAAGATCCAGATGTAGAACTGTCAGC  99

seq1  TACC-TGTATCAGGTCTGTATGCCTGTGTGCTACCATTTTTTTCTGCCAC  145
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTATCAGGTCTGTATGCCTGTGTGCTACCATTTTTTTCTGCCAC  149

seq1  CATGATGACAATGAACTAATCCTCTAAAACTGTAAGTAAGCCCTAATTAA  195
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATGATGACAATGAACTAATCCTCTAAAACTGT-AGTAAGCCCTAATTAA  198

seq1  GTGCCTGTCCTGACACAGAAGCCTGGGCTGTCTTTGGGAGCATCCTCTAC  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGT-CTGACACAGAAGCCTGGGCTGTCTTTGGGAGCATCCTCTAC  247

seq1  AAAGCTTGATGGGCATTGCTGAGGAGTTTGGCCTTCCTATGGTTATCAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGATGGGCATTGCTGAGGAGTTTGGCCTTCCTATGGTTATCAGC  297

seq1  AGTAGGTTCTCAGTGTCCAATTCTGACAGACCCTGAAAAGGAACTAGAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTTCTCAGTGTCCAATTCTGACAGACCCTGAAAAGGAACTAGAGC  347

seq1  CTTTGGATTCCACTGCCATTCTTCTGGATTGGGTGAAGTTTATTTCTAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTCCACTGCCATTCTTCTGGATTGGGTGAAGTTTATTTCTAGT  397

seq1  GTGTCCTACATCCAGACTTATGCTACAAAGCTGGTTTTCCTCTAACAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTACATCCAGACTTATGCTACAAAGCTGGTTTTCCTCTAACAAAT  447

seq1  GGCGTTCTTCTTTGCTGAAGAATATGATGTGCACCTGTGATCCTTCTATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCTTCTTTGCTGAAGAATATGATGTGCACCTGTGATCCTTCTATA  497

seq1  ATCACTGTAGGACATTAGAGATGGCATGAGGTATGAACAATTGCCATGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTAGGACATTAGAGATGGCATGAGGTATGAACAATTGCCATGGA  547

seq1  CAGCAGTGGCTGAGAGGTATTCTCCACAATACCAAAACTAAAGACAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGCTGAGAGGTATTCTCCACAATACCAAAACTAAAGACAGAGA  597

seq1  GGCCAGCAGGCAAGGGTATCATCTCAGTGGCTGCTGCCTGGCTACATAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGGCAAGGGTATCATCTCAGTGGCTGCTGCCTGGCTACATAGG  647

seq1  AGTTGGTTTGTCTTTGCTTAAGACAGAGATTTGTTACGTTCCCCAGACTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTTGTCTTTGCTTAAGACAGAGATTTGTTACGTTCCCCAGACTC  697

seq1  ATTGTCTTCCTGCCTTGGCCTTCAAATGCTGTTCACAGTCCTACACCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCCTGCCTTGGCCTTCAAATGCTGTTCACAGTCCTACACCACT  747

seq1  GCATCCAGCTCATAGACATTTAGACATTCATTATTAGACATTTAATTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGCTCATAGACATTTAGACATTCATTATTAGACATTTAATTTTA  797

seq1  AAATCCTTCTCTGGACCTTCTCCAAGACAGAAAGCTTAGAAAAGCCTTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCTCTGGACCTTCTCCAAGACAGAAAGCTTAGAAAAGCCTTGT  847

seq1  TTCTTTAATGTGATTTGAGGGTGTTTTAGTAACAATAAGAAACCAGAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTGATTTGAGGGTGTTTTAGTAACAATAAGAAACCAGAGTT  897

seq1  ATTGGAATGTGTGATAGGCAGAGAGAAACACTATTTCTAAGAAACCTGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGTGTGATAGGCAGAGAGAAACACTATTTCTAAGAAACCTGAG  947

seq1  TGAATTC  952
      |||||||
seq2  TGAATTC  954