BAC Information

Click to search

BAC

Clone NameB6Ng01-192L19
Chromosome1 (Build37)
Map Location 135,670,909 - 135,770,190
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192L19.bB6Ng01-192L19.g
ACCGA015896GA015897
length1,1061,136
definitionB6Ng01-192L19.b B6Ng01-192L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,670,909 - 135,672,016)(135,769,062 - 135,770,190)
sequence
gaattctagtgatctgaattgggatccaagctctgatgttggtcaagttc
cctaccagcatccactacccagtgaccatgtgacacgaggagcttgcgcc
aagggctgttttgcttatttctgtaggaaagcactttgtttacaaccagc
aagttcctcagcaggagaggcgcattttgctctcatcctactaacttctt
ctgatcatactcttttccagagtccctgtttgcaagccttgaggcaggaa
tatattcatgcccacttaattcctttaaaatcaatatgagtccatattta
agttccaggctttgatttatgaataggaatagaaggtatcatgtttaatg
cacctactgcaccattatatataattgcatgaaattatgaattttggcga
ttagagtgactaacacagcagctacctcagaaatggtaatagttattttc
catttttcttttggatcagaaccttagtatgtttcattttatgtgtgtgg
ttgctttgcctctctctctccctctctctctctctctctctctctttctc
tctttgtgtgtgtatccatgtgcacatcatgtgtgtgcactgtctgcaaa
gggtaacgattggcatgggagcctctgaaactggcattacagatgattgt
gagctacaatgagagtgctcttaactgctgagccatctctcaagccccaa
gctttaatgtatttatttatttggttttttcgagacagggtttttctgtg
tagccctggctgtcctggaactcactctgtagaccaggctggccttgaac
tcagaaatctgcctgcctctgcctctaaatatatatttttaacggccaca
ttttacagtcttcatttgtgtttccctttccctttactagtttgggaaga
tgcagttttcatcttcggagttttaaaagtattaaagtgtgtgtgtgtgt
cttgtgtgtgcctatggcatgtgtgtggaggtggccagacatctctggga
agtcagttctcttctctaacctgtgtgggtgctcggattgaattgactgt
tacctgctgagcatctctcagcttcaccaaaaaaccattacctgcatctg
aatact
gaattccagagcttgcaagctttctggatctgccaccaagcaggctctaa
atccagaaactgtatccatcgcctttctttccccaaatttctaagagctc
atacatatttataatgagagaaaagactgaggagagagatttgttttctt
tattaaactggcatctcagcaaatttatagcagaaaatgaatagtcagtt
tccttctatgtgtttgtagtctgagagttgaattcatggtacctcctaga
ctggcaggggagggagcaaagagatctaggccatctctcagccagagttg
gcctaagggggtgaggacacatgagcgtgatcacaggtggagtgtagcac
taagagaggccagagaaataacagcccttgtggtaaagtgtagctcagcg
ggagagtgcttgcttagcatgggagaagctctgagtttggccctaacact
aggaaaaacatacccaacattattaatatttgcaaaaaaaaaatgcttgg
tgattggcttctgcttggcatactgaatgatatagtctaatggaccgacc
aaggtacccctagtctcctagaagaaccaggttttgcttgacttcatgca
gaccatgtattagggcccaggcccaggaacattcatcatgtgttaattca
tagatttctgtctggtagaaatgcaaatgacttctgtttagaacaataaa
taatgcaaagactgcagtttcattgcactgtaggataataactgaaagtt
ttgcatctaatttaataaatttgtttcttcatttctttcctgggttaatt
cagagtccaagatttcctgaaaacaaaacaagaatttaaaaactcttcaa
attaaaaagatgggcctagcgtgtactgctcttacagagcattcacattt
ggttcccagaacccacatcagatagctcacaactgcttataactccagct
ctgtaggatgtgaccacctttccaataatgctacagtcacatgcatactc
tcacaagaagacacaacaccttacatggtagtttaccacataataaaaac
aggggctgaaagatggcttagcagctagcacaccgagctgctctccagag
gacaggatcaatttcccagcacccaactggtagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135670909_135672016
seq2: B6Ng01-192L19.b_44_1149

seq1  GAATTCTAGTGATCTGAATTGGGATCCAAGCTCTGATGTTGGTCAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGATCTGAATTGGGATCCAAGCTCTGATGTTGGTCAAGTTC  50

seq1  CCTACCAGCATCCACTACCCAGTGACCATGTGACACGAGGAGCTTGCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGCATCCACTACCCAGTGACCATGTGACACGAGGAGCTTGCGCC  100

seq1  AAGGGCTGTTTTGCTTATTTCTGTAGGAAAGCACTTTGTTTACAACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGTTTTGCTTATTTCTGTAGGAAAGCACTTTGTTTACAACCAGC  150

seq1  AAGTTCCTCAGCAGGAGAGGCGCATTTTGCTCTCATCCTACTAACTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTCAGCAGGAGAGGCGCATTTTGCTCTCATCCTACTAACTTCTT  200

seq1  CTGATCATACTCTTTTCCAGAGTCCCTGTTTGCAAGCCTTGAGGCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATACTCTTTTCCAGAGTCCCTGTTTGCAAGCCTTGAGGCAGGAA  250

seq1  TATATTCATGCCCACTTAATTCCTTTAAAATCAATATGAGTCCATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATGCCCACTTAATTCCTTTAAAATCAATATGAGTCCATATTTA  300

seq1  AGTTCCAGGCTTTGATTTATGAATAGGAATAGAAGGTATCATGTTTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGCTTTGATTTATGAATAGGAATAGAAGGTATCATGTTTAATG  350

seq1  CACCTACTGCACCATTATATATAATTGCATGAAATTATGAATTTTGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTGCACCATTATATATAATTGCATGAAATTATGAATTTTGGCGA  400

seq1  TTAGAGTGACTAACACAGCAGCTACCTCAGAAATGGTAATAGTTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGACTAACACAGCAGCTACCTCAGAAATGGTAATAGTTATTTTC  450

seq1  CATTTTTCTTTTGGATCAGAACCTTAGTATGTTTCATTTTATGTGTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTTTGGATCAGAACCTTAGTATGTTTCATTTTATGTGTGTGG  500

seq1  TTGCTTTGCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTTCTC  550

seq1  TCTTTGTGTGTGTATCCATGTGCACATCATGTGTGTGCACTGTCTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTGTGTATCCATGTGCACATCATGTGTGTGCACTGTCTGCAAA  600

seq1  GGGTAACGATTGGCATGGGAGCCTCTGAAACTGGCATTACAGATGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACGATTGGCATGGGAGCCTCTGAAACTGGCATTACAGATGATTGT  650

seq1  GAGCTACAATGAGAGTGCTCTTAACTGCTGAGCCATCTCTCAAGCCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACAATGAGAGTGCTCTTAACTGCTGAGCCATCTCTCAAGCCCCAA  700

seq1  GCTTTAATGTATTTATTTATTTGGTTTTTTCGAGACAGGGTTTTTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATGTATTTATTTATTTGGTTTTTTCGAGACAGGGTTTTTCTGTG  750

seq1  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAC  800

seq1  TCAGAAATCTGCCTGCCTCTGCCTCTTAATATATATTTTTAACGGCCACA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGAAATCTGCCTGCCTCTGCCTCTAAATATATATTTTTAACGGCCACA  850

seq1  -TTTACAGTCTTCATTTGTGTTT-CCTTTCCCTTTACTAGTTT-GGAAGA  897
       |||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TTTTACAGTCTTCATTTGTGTTTCCCTTTCCCTTTACTAGTTTGGGAAGA  900

seq1  TGCAGTTTTCATCTTCGGAGTTTTAAAAGTATTTAAAGTGTGTGTGTGTG  947
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCAGTTTTCATCTTCGGAGTTTTAAAAGTA-TTAAAGTGTGTGTGTGTG  949

seq1  TCTTGTGTGTG-CTATGGCATGTGTGTGGAGGTTGGCAGACAACTCTGGG  996
      ||||||||||| ||||||||||||||||||||| | |||||| |||||||
seq2  TCTTGTGTGTGCCTATGGCATGTGTGTGGAGGTGGCCAGACATCTCTGGG  999

seq1  AAGTCAGTTCTCTTCTCCTACCTTGTGTGGGTGCTCGGAATTGAATTGAC  1046
      |||||||||||||||| ||| | ||||||||||||||| |||||||||||
seq2  AAGTCAGTTCTCTTCT-CTAACCTGTGTGGGTGCTCGG-ATTGAATTGAC  1047

seq1  TGTTTACCTGCTGAGCAATCTCTCCAGCTTTCACCAAAAAACCATAACCT  1096
      || ||||||||||||| |||||| |||| |||||||||||||||| ||||
seq2  TG-TTACCTGCTGAGC-ATCTCT-CAGC-TTCACCAAAAAACCATTACCT  1093

seq1  GCATCTG-ATACT  1108
      ||||||| |||||
seq2  GCATCTGAATACT  1106

seq1: chr1_135769062_135770190
seq2: B6Ng01-192L19.g_67_1202 (reverse)

seq1  GAGCTACCAAGTGGGTGCTGGGAATTGAACCCTGGTCCTCTGGAAGAGCA  50
      |||||||||  ||||||||||||| |  | ||| ||||||||| ||||||
seq2  GAGCTACCAGTTGGGTGCTGGGAAATTGATCCT-GTCCTCTGG-AGAGCA  48

seq1  GCTC-GTGTGCTTAGCTGCTAAGCCATCTTTCCAGCCCCTGTTTTTATTA  99
      |||| |||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GCTCGGTGTGC-TAGCTGCTAAGCCATCTTT-CAGCCCCTGTTTTTATTA  96

seq1  TGTG--TAACTA-CATGT-AGGTG-TGTGTCTTCTTGTGAGAGTATGCAT  144
      ||||   ||||| ||||| ||||| |||||||||||||||||||||||||
seq2  TGTGGTAAACTACCATGTAAGGTGTTGTGTCTTCTTGTGAGAGTATGCAT  146

seq1  GTGACTGTAGCATTAT--GGAAGGT-GTCACATCCTACAGAGCTGGAGTT  191
      ||||||||||||||||  | ||||| ||||||||||||||||||||||||
seq2  GTGACTGTAGCATTATTGGAAAGGTGGTCACATCCTACAGAGCTGGAGTT  196

seq1  ATAAGCAGTTGTGAGCTATCTGATGTGGGTTCTGGGAACCAAATGTGAAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGTTGTGAGCTATCTGATGTGGGTTCTGGGAACCAAATGTGAAT  246

seq1  GCTCTGTAAGAGCAGTACACGCTAGG-CCATCTTTTTAATTTGAAGAGTT  290
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTCTGTAAGAGCAGTACACGCTAGGCCCATCTTTTTAATTTGAAGAGTT  296

seq1  TTTAAATTCTTGTTTTGTTTTCAGGAAATCTTGGACTCTGAATTAA-CCA  339
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTAAATTCTTGTTTTGTTTTCAGGAAATCTTGGACTCTGAATTAACCCA  346

seq1  GGAAAGAAATGAAGAAACAAATTTATTAAATTAGATGCAAAACTTTCAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAATGAAGAAACAAATTTATTAAATTAGATGCAAAACTTTCAGT  396

seq1  TATTATCCTACAGTGCAATGAAACTGCAGTCTTTGCATTATTTATTGTTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTACAGTGCAATGAAACTGCAGTCTTTGCATTATTTATTGTTC  446

seq1  TAAACAGAAGTCATTTGCATTTCTACCAGACAGAAATCTATGAATTAACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGTCATTTGCATTTCTACCAGACAGAAATCTATGAATTAACA  496

seq1  CATGATGAATGTTCCTGGGCCTGGGCCCTAATACATGGTCTGCATGAAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAATGTTCCTGGGCCTGGGCCCTAATACATGGTCTGCATGAAGT  546

seq1  CAAGCAAAACCTGGTTCTTCTAGGAGACTAGGGGTACCTTGGTCGGTCCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAACCTGGTTCTTCTAGGAGACTAGGGGTACCTTGGTCGGTCCA  596

seq1  TTAGACTATATCATTCAGTATGCCAAGCAGAAGCCAATCACCAAGCATTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTATATCATTCAGTATGCCAAGCAGAAGCCAATCACCAAGCATTT  646

seq1  TTTTTTTGCAAATATTAATAATGTTGGGTATGTTTTTCCTAGTGTTAGGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCAAATATTAATAATGTTGGGTATGTTTTTCCTAGTGTTAGGG  696

seq1  CCAAACTCAGAGCTTCTCCCATGCTAAGCAAGCACTCTCCCGCTGAGCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCAGAGCTTCTCCCATGCTAAGCAAGCACTCTCCCGCTGAGCTA  746

seq1  CACTTTACCACAAGGGCTGTTATTTCTCTGGCCTCTCTTAGTGCTACACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTACCACAAGGGCTGTTATTTCTCTGGCCTCTCTTAGTGCTACACT  796

seq1  CCACCTGTGATCACGCTCATGTGTCCTCACCCCCTTAGGCCAACTCTGGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGATCACGCTCATGTGTCCTCACCCCCTTAGGCCAACTCTGGC  846

seq1  TGAGAGATGGCCTAGATCTCTTTGCTCCCTCCCCTGCCAGTCTAGGAGGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGGCCTAGATCTCTTTGCTCCCTCCCCTGCCAGTCTAGGAGGT  896

seq1  ACCATGAATTCAACTCTCAGACTACAAACACATAGAAGGAAACTGACTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAATTCAACTCTCAGACTACAAACACATAGAAGGAAACTGACTAT  946

seq1  TCATTTTCTGCTATAAATTTGCTGAGATGCCAGTTTAATAAAGAAAACAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTGCTATAAATTTGCTGAGATGCCAGTTTAATAAAGAAAACAA  996

seq1  ATCTCTCTCCTCAGTCTTTTCTCTCATTATAAATATGTATGAGCTCTTAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCCTCAGTCTTTTCTCTCATTATAAATATGTATGAGCTCTTAG  1046

seq1  AAATTTGGGGAAAGAAAGGCGATGGATACAGTTTCTGGATTTAGAGCCTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGGGAAAGAAAGGCGATGGATACAGTTTCTGGATTTAGAGCCTG  1096

seq1  CTTGGTGGCAGATCCAGAAAGCTTGCAAGCTCTGGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGCAGATCCAGAAAGCTTGCAAGCTCTGGAATTC  1136